Incidental Mutation 'R1657:Caprin1'
ID 186442
Institutional Source Beutler Lab
Gene Symbol Caprin1
Ensembl Gene ENSMUSG00000027184
Gene Name cell cycle associated protein 1
Synonyms caprin-1, RNG105, Gpiap1, MMGPIP137
MMRRC Submission 039693-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.591) question?
Stock # R1657 (G1)
Quality Score 225
Status Not validated
Chromosome 2
Chromosomal Location 103593292-103627946 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 103599851 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Glutamic Acid at position 608 (V608E)
Ref Sequence ENSEMBL: ENSMUSP00000106777 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028607] [ENSMUST00000111147] [ENSMUST00000145606]
AlphaFold Q60865
Predicted Effect probably damaging
Transcript: ENSMUST00000028607
AA Change: V608E

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000028607
Gene: ENSMUSG00000027184
AA Change: V608E

DomainStartEndE-ValueType
low complexity region 2 43 N/A INTRINSIC
coiled coil region 52 93 N/A INTRINSIC
low complexity region 176 186 N/A INTRINSIC
low complexity region 271 280 N/A INTRINSIC
low complexity region 309 322 N/A INTRINSIC
low complexity region 326 335 N/A INTRINSIC
Pfam:Caprin-1_C 365 681 1.4e-173 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000111147
AA Change: V608E

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000106777
Gene: ENSMUSG00000027184
AA Change: V608E

DomainStartEndE-ValueType
low complexity region 2 43 N/A INTRINSIC
coiled coil region 52 93 N/A INTRINSIC
low complexity region 176 186 N/A INTRINSIC
low complexity region 271 280 N/A INTRINSIC
low complexity region 309 322 N/A INTRINSIC
low complexity region 326 335 N/A INTRINSIC
Pfam:Caprin-1_C 365 680 2.4e-135 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000128477
Predicted Effect noncoding transcript
Transcript: ENSMUST00000132537
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137390
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137572
Predicted Effect unknown
Transcript: ENSMUST00000143349
AA Change: V129E
SMART Domains Protein: ENSMUSP00000117733
Gene: ENSMUSG00000027184
AA Change: V129E

DomainStartEndE-ValueType
Pfam:Caprin-1_C 1 202 8.2e-95 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000149175
Predicted Effect probably benign
Transcript: ENSMUST00000145606
SMART Domains Protein: ENSMUSP00000119327
Gene: ENSMUSG00000027184

DomainStartEndE-ValueType
Pfam:Caprin-1_C 1 33 2.9e-11 PFAM
Pfam:Caprin-1_C 32 82 1.4e-26 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000143188
SMART Domains Protein: ENSMUSP00000114423
Gene: ENSMUSG00000027184

DomainStartEndE-ValueType
low complexity region 84 93 N/A INTRINSIC
low complexity region 122 135 N/A INTRINSIC
low complexity region 139 148 N/A INTRINSIC
Pfam:Caprin-1_C 178 254 4.2e-22 PFAM
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.5%
  • 20x: 93.2%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased fetal size, bent posture, cyanosis, respiratory failure, and neonatal lethality with impaired neuronal network development and reduced dendritic localization of sodium potassium ATPase subunit isoform mRNAs. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acaca T G 11: 84,154,910 (GRCm39) D988E probably benign Het
Als2 A G 1: 59,219,760 (GRCm39) V1185A probably damaging Het
Amdhd2 A G 17: 24,375,029 (GRCm39) V391A probably damaging Het
Armh4 G C 14: 50,011,017 (GRCm39) T230S probably damaging Het
Celsr3 T A 9: 108,720,151 (GRCm39) C2512* probably null Het
Cfl1 A T 19: 5,543,583 (GRCm39) R187W probably damaging Het
Cgnl1 C T 9: 71,633,226 (GRCm39) V42I probably damaging Het
Chd2 A G 7: 73,130,178 (GRCm39) Y826H probably damaging Het
Col9a2 C A 4: 120,898,171 (GRCm39) P28T unknown Het
Cyp3a44 G A 5: 145,716,553 (GRCm39) P346S probably damaging Het
Dact2 A G 17: 14,418,252 (GRCm39) V151A probably benign Het
Dhx29 T C 13: 113,089,377 (GRCm39) I716T probably damaging Het
Entrep1 C A 19: 23,952,999 (GRCm39) C437F probably damaging Het
Esam T C 9: 37,448,917 (GRCm39) S342P probably damaging Het
Fer1l4 A G 2: 155,877,518 (GRCm39) V1053A possibly damaging Het
Grk3 A G 5: 113,114,848 (GRCm39) F124S probably damaging Het
H2-DMa G A 17: 34,356,373 (GRCm39) probably null Het
Hsd3b5 T A 3: 98,527,036 (GRCm39) I137F possibly damaging Het
Itgav A T 2: 83,632,123 (GRCm39) I902F probably benign Het
Itsn1 G T 16: 91,706,111 (GRCm39) C179F probably damaging Het
Kcnh8 G A 17: 53,146,153 (GRCm39) R347H probably damaging Het
Kif9 T C 9: 110,319,034 (GRCm39) M166T possibly damaging Het
Kmt5c C T 7: 4,749,453 (GRCm39) Q324* probably null Het
Lcn9 G A 2: 25,714,722 (GRCm39) E154K probably benign Het
Mfge8 A T 7: 78,791,521 (GRCm39) L227Q probably benign Het
Mroh2b A T 15: 4,960,525 (GRCm39) R753* probably null Het
Mtif2 G A 11: 29,490,721 (GRCm39) R475Q probably benign Het
Nln C T 13: 104,173,455 (GRCm39) V584I possibly damaging Het
Nr2e3 T C 9: 59,856,050 (GRCm39) E129G probably benign Het
Ocstamp T C 2: 165,239,436 (GRCm39) D250G probably damaging Het
Or1a1 A T 11: 74,086,722 (GRCm39) H131L probably damaging Het
Or52n4b T C 7: 108,144,584 (GRCm39) I284T possibly damaging Het
Or8k27 A C 2: 86,275,562 (GRCm39) L255V probably damaging Het
Pld1 A T 3: 28,125,336 (GRCm39) I417L probably benign Het
Polr1a A T 6: 71,918,519 (GRCm39) K692N probably damaging Het
Qsox2 A T 2: 26,110,759 (GRCm39) Y152* probably null Het
Rpap1 T C 2: 119,614,259 (GRCm39) D46G possibly damaging Het
Rpe65 A G 3: 159,320,085 (GRCm39) T246A probably damaging Het
Scn5a T C 9: 119,391,446 (GRCm39) D82G probably damaging Het
Sema3d A G 5: 12,634,941 (GRCm39) E669G possibly damaging Het
Serpinb6c T C 13: 34,064,209 (GRCm39) N282S probably benign Het
Snap47 A T 11: 59,319,596 (GRCm39) S181T probably benign Het
Snx9 A C 17: 5,968,711 (GRCm39) T336P possibly damaging Het
Sphkap G A 1: 83,255,236 (GRCm39) R838* probably null Het
Terb1 A T 8: 105,215,123 (GRCm39) D284E possibly damaging Het
Tmem266 C T 9: 55,325,292 (GRCm39) A153V probably damaging Het
Trappc2b T C 11: 51,576,505 (GRCm39) Q131R probably benign Het
Ttn T C 2: 76,573,148 (GRCm39) E25915G possibly damaging Het
Tubal3 A G 13: 3,983,011 (GRCm39) T264A possibly damaging Het
Vldlr G A 19: 27,223,070 (GRCm39) R747Q probably benign Het
Zc3h8 G T 2: 128,771,877 (GRCm39) probably benign Het
Zfp184 C T 13: 22,143,443 (GRCm39) T383M probably damaging Het
Zfp455 T C 13: 67,346,703 (GRCm39) F38S possibly damaging Het
Zfp746 A G 6: 48,059,108 (GRCm39) V167A possibly damaging Het
Zfp985 T A 4: 147,668,567 (GRCm39) N478K probably benign Het
Other mutations in Caprin1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01356:Caprin1 APN 2 103,605,801 (GRCm39) missense probably benign 0.00
IGL01369:Caprin1 APN 2 103,599,210 (GRCm39) missense probably damaging 0.99
IGL02054:Caprin1 APN 2 103,602,143 (GRCm39) splice site probably null
IGL02260:Caprin1 APN 2 103,609,714 (GRCm39) missense probably damaging 1.00
IGL02526:Caprin1 APN 2 103,605,948 (GRCm39) unclassified probably benign
IGL03405:Caprin1 APN 2 103,609,850 (GRCm39) missense probably damaging 1.00
R0027:Caprin1 UTSW 2 103,605,925 (GRCm39) unclassified probably benign
R0396:Caprin1 UTSW 2 103,599,914 (GRCm39) missense probably damaging 0.99
R0603:Caprin1 UTSW 2 103,627,146 (GRCm39) missense probably benign 0.01
R1406:Caprin1 UTSW 2 103,606,332 (GRCm39) missense probably benign 0.39
R1406:Caprin1 UTSW 2 103,606,332 (GRCm39) missense probably benign 0.39
R1558:Caprin1 UTSW 2 103,606,332 (GRCm39) missense possibly damaging 0.75
R2945:Caprin1 UTSW 2 103,603,154 (GRCm39) missense probably benign 0.04
R3946:Caprin1 UTSW 2 103,627,111 (GRCm39) missense probably damaging 0.99
R5208:Caprin1 UTSW 2 103,599,778 (GRCm39) critical splice donor site probably null
R6108:Caprin1 UTSW 2 103,606,362 (GRCm39) missense possibly damaging 0.93
R6603:Caprin1 UTSW 2 103,605,856 (GRCm39) missense probably benign 0.01
R7247:Caprin1 UTSW 2 103,609,819 (GRCm39) missense possibly damaging 0.63
R7338:Caprin1 UTSW 2 103,609,768 (GRCm39) missense probably benign 0.01
R7624:Caprin1 UTSW 2 103,603,022 (GRCm39) missense possibly damaging 0.81
R7749:Caprin1 UTSW 2 103,602,099 (GRCm39) missense probably benign 0.03
R7946:Caprin1 UTSW 2 103,603,093 (GRCm39) missense probably damaging 0.99
R8304:Caprin1 UTSW 2 103,599,862 (GRCm39) missense probably damaging 1.00
R8324:Caprin1 UTSW 2 103,613,526 (GRCm39) nonsense probably null
R8547:Caprin1 UTSW 2 103,599,862 (GRCm39) missense probably damaging 1.00
R8549:Caprin1 UTSW 2 103,599,862 (GRCm39) missense probably damaging 1.00
R8782:Caprin1 UTSW 2 103,603,133 (GRCm39) missense probably benign 0.06
R8946:Caprin1 UTSW 2 103,608,378 (GRCm39) missense probably damaging 1.00
R9332:Caprin1 UTSW 2 103,603,390 (GRCm39) missense probably benign 0.00
R9758:Caprin1 UTSW 2 103,606,283 (GRCm39) missense possibly damaging 0.70
Z1177:Caprin1 UTSW 2 103,606,279 (GRCm39) missense probably null 1.00
Predicted Primers PCR Primer
(F):5'- TGACATGCATTCAGCACACACGTAA -3'
(R):5'- GGTCTTAATTCTGGGTCGGAAGGCA -3'

Sequencing Primer
(F):5'- TGCAGAGAAGTAATTCGTTCCC -3'
(R):5'- ccagcattcaggaggcag -3'
Posted On 2014-05-09