Mutagenetix > Incidental Mutation

Incidental Mutation 'R1666:Zyx'

187181

Institutional Source

Beutler Lab

Gene Symbol

Zyx

Ensembl Gene

ENSMUSG00000029860

Gene Name

zyxin

Synonyms

R75157

MMRRC Submission

039702-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1666 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

42326564-42337147 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 42332966 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glutamic Acid at position 372 (V372E)

Ref Sequence

ENSEMBL: ENSMUSP00000145451 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000070635] [ENSMUST00000073387] [ENSMUST00000164375] [ENSMUST00000203329] [ENSMUST00000203401] [ENSMUST00000203652] [ENSMUST00000204357] [ENSMUST00000203846] [ENSMUST00000203849]

AlphaFold

Q62523

Predicted Effect

probably benign
Transcript: ENSMUST00000070635
AA Change: V341E

PolyPhen 2 Score 0.046 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000070427
Gene: ENSMUSG00000029860
AA Change: V341E

Domain	Start	End	E-Value	Type
low complexity region	2	18	N/A	INTRINSIC
low complexity region	21	36	N/A	INTRINSIC
low complexity region	61	84	N/A	INTRINSIC
low complexity region	92	131	N/A	INTRINSIC
low complexity region	144	158	N/A	INTRINSIC
low complexity region	174	186	N/A	INTRINSIC
low complexity region	199	220	N/A	INTRINSIC
low complexity region	250	266	N/A	INTRINSIC
low complexity region	269	283	N/A	INTRINSIC
low complexity region	323	333	N/A	INTRINSIC
low complexity region	343	363	N/A	INTRINSIC
LIM	375	428	2.4e-17	SMART
LIM	435	487	7.39e-18	SMART
LIM	495	557	9.31e-15	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000073387

SMART Domains

Protein: ENSMUSP00000073099
Gene: ENSMUSG00000029859

Domain	Start	End	E-Value	Type
signal peptide	1	26	N/A	INTRINSIC
EPH_lbd	28	205	3.23e-103	SMART
FN3	334	430	8.43e-9	SMART
FN3	448	526	1.59e-4	SMART
Pfam:EphA2_TM	549	622	3.4e-13	PFAM
TyrKc	625	881	2.57e-126	SMART
SAM	911	977	4.13e-19	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000164375
AA Change: V372E

PolyPhen 2 Score 0.481 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000126622
Gene: ENSMUSG00000029860
AA Change: V372E

Domain	Start	End	E-Value	Type
low complexity region	2	18	N/A	INTRINSIC
low complexity region	21	36	N/A	INTRINSIC
low complexity region	61	84	N/A	INTRINSIC
low complexity region	92	131	N/A	INTRINSIC
low complexity region	144	158	N/A	INTRINSIC
low complexity region	174	186	N/A	INTRINSIC
low complexity region	199	220	N/A	INTRINSIC
low complexity region	250	266	N/A	INTRINSIC
low complexity region	269	283	N/A	INTRINSIC
low complexity region	323	333	N/A	INTRINSIC
low complexity region	343	363	N/A	INTRINSIC
LIM	375	428	2.4e-17	SMART
LIM	435	487	7.39e-18	SMART
LIM	495	557	9.31e-15	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203290

Predicted Effect

probably benign
Transcript: ENSMUST00000203329

SMART Domains

Protein: ENSMUSP00000144863
Gene: ENSMUSG00000029860

Domain	Start	End	E-Value	Type
low complexity region	2	18	N/A	INTRINSIC
low complexity region	21	36	N/A	INTRINSIC
low complexity region	61	84	N/A	INTRINSIC
low complexity region	92	131	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000203401
AA Change: V341E

PolyPhen 2 Score 0.046 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000145236
Gene: ENSMUSG00000029860
AA Change: V341E

Domain	Start	End	E-Value	Type
low complexity region	2	18	N/A	INTRINSIC
low complexity region	21	36	N/A	INTRINSIC
low complexity region	61	84	N/A	INTRINSIC
low complexity region	92	131	N/A	INTRINSIC
low complexity region	143	155	N/A	INTRINSIC
low complexity region	168	189	N/A	INTRINSIC
low complexity region	219	235	N/A	INTRINSIC
low complexity region	238	252	N/A	INTRINSIC
low complexity region	292	302	N/A	INTRINSIC
low complexity region	312	332	N/A	INTRINSIC
LIM	344	397	2.4e-17	SMART
LIM	404	456	7.39e-18	SMART
LIM	464	526	9.31e-15	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203626

Predicted Effect

possibly damaging
Transcript: ENSMUST00000203652
AA Change: V372E

PolyPhen 2 Score 0.481 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000145451
Gene: ENSMUSG00000029860
AA Change: V372E

Domain	Start	End	E-Value	Type
low complexity region	2	18	N/A	INTRINSIC
low complexity region	21	36	N/A	INTRINSIC
low complexity region	61	84	N/A	INTRINSIC
low complexity region	92	131	N/A	INTRINSIC
low complexity region	144	158	N/A	INTRINSIC
low complexity region	174	186	N/A	INTRINSIC
low complexity region	199	220	N/A	INTRINSIC
low complexity region	250	266	N/A	INTRINSIC
low complexity region	269	283	N/A	INTRINSIC
low complexity region	323	333	N/A	INTRINSIC
low complexity region	343	363	N/A	INTRINSIC
LIM	375	428	2.4e-17	SMART
LIM	435	487	7.39e-18	SMART
LIM	495	557	9.31e-15	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000204357

SMART Domains

Protein: ENSMUSP00000144763
Gene: ENSMUSG00000029859

Domain	Start	End	E-Value	Type
signal peptide	1	26	N/A	INTRINSIC
EPH_lbd	28	205	1.1e-105	SMART
FN3	334	430	4.2e-11	SMART
low complexity region	459	473	N/A	INTRINSIC
FN3	483	563	2.4e-8	SMART
Pfam:EphA2_TM	586	659	7.6e-11	PFAM
STYKc	662	849	1.1e-65	SMART
SAM	879	945	2.5e-21	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000203846

SMART Domains

Protein: ENSMUSP00000145189
Gene: ENSMUSG00000029860

Domain	Start	End	E-Value	Type
low complexity region	2	18	N/A	INTRINSIC
low complexity region	21	36	N/A	INTRINSIC
low complexity region	61	84	N/A	INTRINSIC
low complexity region	92	131	N/A	INTRINSIC
low complexity region	144	158	N/A	INTRINSIC
low complexity region	174	186	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204270

Predicted Effect

probably benign
Transcript: ENSMUST00000203849

SMART Domains

Protein: ENSMUSP00000145052
Gene: ENSMUSG00000029860

Domain	Start	End	E-Value	Type
low complexity region	2	18	N/A	INTRINSIC
low complexity region	21	36	N/A	INTRINSIC
low complexity region	61	84	N/A	INTRINSIC
low complexity region	92	109	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204480

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Focal adhesions are actin-rich structures that enable cells to adhere to the extracellular matrix and at which protein complexes involved in signal transduction assemble. Zyxin is a zinc-binding phosphoprotein that concentrates at focal adhesions and along the actin cytoskeleton. Zyxin has an N-terminal proline-rich domain and three LIM domains in its C-terminal half. The proline-rich domain may interact with SH3 domains of proteins involved in signal transduction pathways while the LIM domains are likely involved in protein-protein binding. Zyxin may function as a messenger in the signal transduction pathway that mediates adhesion-stimulated changes in gene expression and may modulate the cytoskeletal organization of actin bundles. Alternative splicing results in multiple transcript variants that encode the same isoform. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice lacking functional copies of this gene are viable, fertile, and develop normally. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acvrl1	G	A	15: 101,035,458 (GRCm39)	R328H	probably damaging	Het
Afp	T	C	5: 90,652,927 (GRCm39)	S466P	probably damaging	Het
Arhgap45	A	G	10: 79,864,584 (GRCm39)	S879G	possibly damaging	Het
Asic1	A	G	15: 99,597,006 (GRCm39)	D556G	probably damaging	Het
Atp2a3	T	A	11: 72,869,633 (GRCm39)		probably null	Het
Brinp2	C	A	1: 158,074,128 (GRCm39)	E664D	probably damaging	Het
Cap2	C	A	13: 46,768,799 (GRCm39)	H147N	probably damaging	Het
Cd209f	G	A	8: 4,154,862 (GRCm39)	Q79*	probably null	Het
Chrna7	T	C	7: 62,861,890 (GRCm39)	Y54C	possibly damaging	Het
Clec1a	T	C	6: 129,413,967 (GRCm39)	D40G	probably benign	Het
Col11a1	A	G	3: 113,855,184 (GRCm39)	E148G	unknown	Het
Comp	A	T	8: 70,831,607 (GRCm39)		probably null	Het
Cpz	A	G	5: 35,665,460 (GRCm39)		probably null	Het
Cyfip1	T	A	7: 55,521,646 (GRCm39)	N13K	probably damaging	Het
Cyp2c50	A	T	19: 40,079,499 (GRCm39)	M198L	probably benign	Het
Deup1	A	T	9: 15,486,487 (GRCm39)	Y398N	possibly damaging	Het
Elapor1	A	G	3: 108,377,313 (GRCm39)	S434P	probably benign	Het
Epb41l4a	A	G	18: 34,054,962 (GRCm39)	L42P	probably damaging	Het
Exo1	T	C	1: 175,736,052 (GRCm39)	I812T	possibly damaging	Het
Fbxl17	A	T	17: 63,692,060 (GRCm39)		probably null	Het
Fxn	A	G	19: 24,239,377 (GRCm39)	Y172H	probably damaging	Het
Gabra6	A	G	11: 42,208,461 (GRCm39)	S124P	probably damaging	Het
Gje1	C	A	10: 14,592,551 (GRCm39)	W77L	possibly damaging	Het
Glra1	A	G	11: 55,465,225 (GRCm39)	S23P	probably damaging	Het
Gm6811	T	C	17: 21,314,529 (GRCm39)		noncoding transcript	Het
Greb1l	T	A	18: 10,501,080 (GRCm39)		probably null	Het
Greb1l	T	C	18: 10,529,708 (GRCm39)		probably null	Het
Grm6	A	T	11: 50,750,711 (GRCm39)	I625F	probably damaging	Het
Guca1a	A	G	17: 47,711,167 (GRCm39)	F60L	probably damaging	Het
Hectd1	T	A	12: 51,800,607 (GRCm39)	E2070D	possibly damaging	Het
Itga5	G	A	15: 103,256,329 (GRCm39)	T910I	probably benign	Het
Kctd10	A	G	5: 114,507,051 (GRCm39)	V142A	probably benign	Het
Kif1c	C	T	11: 70,619,223 (GRCm39)	L953F	probably damaging	Het
Lmtk3	A	T	7: 45,443,588 (GRCm39)	D757V	probably benign	Het
Lpcat1	T	C	13: 73,658,242 (GRCm39)		probably null	Het
Lrrc30	A	T	17: 67,939,200 (GRCm39)	C127S	probably benign	Het
Mc4r	A	G	18: 66,992,480 (GRCm39)	L211P	probably damaging	Het
Mgat5b	T	A	11: 116,874,474 (GRCm39)	N635K	probably benign	Het
Mms19	A	T	19: 41,940,995 (GRCm39)	M443K	possibly damaging	Het
Mroh5	T	C	15: 73,659,754 (GRCm39)	N359S	probably benign	Het
Nlrc4	G	A	17: 74,752,901 (GRCm39)	T494M	probably damaging	Het
Ntf3	T	C	6: 126,079,401 (GRCm39)	D35G	possibly damaging	Het
Or5g25	A	T	2: 85,478,157 (GRCm39)	C169*	probably null	Het
Osbpl5	T	C	7: 143,262,776 (GRCm39)	H192R	probably damaging	Het
Parp4	A	T	14: 56,861,620 (GRCm39)	K984N	possibly damaging	Het
Pdgfra	G	A	5: 75,349,681 (GRCm39)	G892D	possibly damaging	Het
Pik3c2g	A	T	6: 139,612,634 (GRCm39)		probably benign	Het
Ppcdc	T	A	9: 57,321,998 (GRCm39)	M181L	possibly damaging	Het
Pramel7	G	A	2: 87,322,747 (GRCm39)	P6S	probably damaging	Het
Prkcz	G	T	4: 155,374,208 (GRCm39)	F69L	probably damaging	Het
Prkd1	G	A	12: 50,441,709 (GRCm39)	H277Y	probably damaging	Het
Ptgs2	A	G	1: 149,977,021 (GRCm39)	Y44C	probably damaging	Het
Rbck1	T	A	2: 152,158,819 (GRCm39)	S488C	probably damaging	Het
Rbl1	T	C	2: 157,001,654 (GRCm39)	Y878C	probably damaging	Het
Rbm6	G	A	9: 107,669,055 (GRCm39)	T619I	probably benign	Het
Rp1	A	G	1: 4,420,086 (GRCm39)	I342T	probably damaging	Het
Rpn2	C	T	2: 157,136,075 (GRCm39)	T161M	possibly damaging	Het
Rufy4	G	A	1: 74,186,837 (GRCm39)	V542I	probably benign	Het
Sema5b	C	T	16: 35,478,852 (GRCm39)	P559S	probably benign	Het
Serpinb3d	A	G	1: 107,008,481 (GRCm39)	V128A	probably benign	Het
Slc35f3	T	A	8: 127,115,960 (GRCm39)	S296T	probably damaging	Het
Slco1a8	T	A	6: 141,927,775 (GRCm39)		probably null	Het
Smarca2	A	G	19: 26,624,434 (GRCm39)	I365V	possibly damaging	Het
Spdya	T	A	17: 71,885,235 (GRCm39)	C230S	probably damaging	Het
Sv2b	G	A	7: 74,856,089 (GRCm39)	A67V	probably benign	Het
Tapbpl	A	G	6: 125,207,164 (GRCm39)	V175A	probably benign	Het
Tmt1a3	A	G	15: 100,233,099 (GRCm39)	I97V	probably benign	Het
Ttn	T	C	2: 76,642,095 (GRCm39)	T13373A	probably damaging	Het
Tubb5	A	T	17: 36,147,530 (GRCm39)	N52K	probably benign	Het
Tyr	T	A	7: 87,142,149 (GRCm39)	Y137F	probably damaging	Het
Unc45b	T	A	11: 82,808,565 (GRCm39)	I217N	probably benign	Het
Vmn1r202	A	T	13: 22,685,540 (GRCm39)	D292E	possibly damaging	Het
Vmn1r22	A	G	6: 57,877,704 (GRCm39)	M91T	probably benign	Het
Washc2	T	A	6: 116,200,215 (GRCm39)		probably null	Het
Zfp566	A	T	7: 29,777,901 (GRCm39)	H93Q	probably benign	Het
Zfp740	A	G	15: 102,116,753 (GRCm39)	D56G	probably damaging	Het
Zfp804b	A	C	5: 6,821,323 (GRCm39)	L580R	possibly damaging	Het
Zmiz2	T	G	11: 6,346,836 (GRCm39)	S148R	probably benign	Het
Zmym6	T	A	4: 127,016,652 (GRCm39)	I719N	probably damaging	Het

Other mutations in Zyx

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01360:Zyx	APN	6	42,327,378 (GRCm39)	missense	probably damaging	0.99
IGL02418:Zyx	APN	6	42,334,327 (GRCm39)	missense	probably damaging	1.00
IGL03090:Zyx	APN	6	42,334,276 (GRCm39)	nonsense	probably null
R0282:Zyx	UTSW	6	42,332,939 (GRCm39)	missense	probably damaging	1.00
R0449:Zyx	UTSW	6	42,328,247 (GRCm39)	missense	probably damaging	1.00
R1496:Zyx	UTSW	6	42,333,246 (GRCm39)	missense	probably damaging	1.00
R1668:Zyx	UTSW	6	42,332,966 (GRCm39)	missense	possibly damaging	0.48
R1956:Zyx	UTSW	6	42,328,289 (GRCm39)	missense	probably damaging	1.00
R4272:Zyx	UTSW	6	42,327,880 (GRCm39)	missense	probably damaging	1.00
R4766:Zyx	UTSW	6	42,333,093 (GRCm39)	splice site	probably null
R4817:Zyx	UTSW	6	42,333,421 (GRCm39)	missense	probably damaging	1.00
R5216:Zyx	UTSW	6	42,333,466 (GRCm39)	missense	probably damaging	0.96
R6981:Zyx	UTSW	6	42,327,291 (GRCm39)	missense	unknown
R7331:Zyx	UTSW	6	42,328,593 (GRCm39)	missense	probably benign	0.03
R7553:Zyx	UTSW	6	42,327,408 (GRCm39)	missense	probably null	0.99
R7665:Zyx	UTSW	6	42,333,096 (GRCm39)	missense	probably damaging	0.99
R7962:Zyx	UTSW	6	42,333,505 (GRCm39)	missense	probably damaging	1.00
R8410:Zyx	UTSW	6	42,333,384 (GRCm39)	missense	probably benign	0.39
R9181:Zyx	UTSW	6	42,334,818 (GRCm39)	missense	probably damaging	1.00
RF020:Zyx	UTSW	6	42,334,330 (GRCm39)	missense	probably damaging	1.00
X0022:Zyx	UTSW	6	42,332,960 (GRCm39)	missense	probably benign	0.01
X0028:Zyx	UTSW	6	42,328,012 (GRCm39)	missense	probably damaging	0.99
X0064:Zyx	UTSW	6	42,334,249 (GRCm39)	missense	probably benign	0.08
Z1176:Zyx	UTSW	6	42,333,442 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGGGGTCAATCTATGCTTCCCGTC -3'
(R):5'- GCTGATTGCATTTGCCACAGGAC -3'

Sequencing Primer
(F):5'- gcgtgCCATCACATGCTC -3'
(R):5'- ATTTGCCACAGGACTCTGG -3'

Posted On

2014-05-09