Mutagenetix > Incidental Mutation

Incidental Mutation 'R1673:Cdcp1'

187826

Institutional Source

Beutler Lab

Gene Symbol

Cdcp1

Ensembl Gene

ENSMUSG00000035498

Gene Name

CUB domain containing protein 1

Synonyms

E030027H19Rik, 9030022E12Rik

MMRRC Submission

039709-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1673 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

122999889-123045103 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 123007086 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Stop codon at position 554 (K554*)

Ref Sequence

ENSEMBL: ENSMUSP00000042057 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039229]

AlphaFold

Q5U462

Predicted Effect

probably null
Transcript: ENSMUST00000039229
AA Change: K554*

SMART Domains

Protein: ENSMUSP00000042057
Gene: ENSMUSG00000035498
AA Change: K554*

Domain	Start	End	E-Value	Type
signal peptide	1	29	N/A	INTRINSIC
internal_repeat_1	56	267	1.33e-11	PROSPERO
internal_repeat_1	374	591	1.33e-11	PROSPERO
transmembrane domain	668	690	N/A	INTRINSIC
low complexity region	770	782	N/A	INTRINSIC
low complexity region	792	802	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140915

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148158

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 91.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a transmembrane protein which contains three extracellular CUB domains and acts as a substrate for Src family kinases. The protein plays a role in the tyrosine phosphorylation-dependent regulation of cellular events that are involved in tumor invasion and metastasis. Alternative splicing results in multiple transcript variants of this gene. [provided by RefSeq, May 2013]
PHENOTYPE: Mice homozygous for a knock-out allele are viable and fertile. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 80 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca6	T	C	11: 110,103,165 (GRCm39)	S809G	probably benign	Het
Ap4b1	T	A	3: 103,725,161 (GRCm39)		probably null	Het
Aqp12	A	G	1: 92,934,606 (GRCm39)	Q161R	possibly damaging	Het
Atp8a2	A	G	14: 60,028,689 (GRCm39)	I926T	probably benign	Het
Cacna2d1	A	T	5: 16,504,988 (GRCm39)	N314I	probably damaging	Het
Cd209d	A	G	8: 3,927,113 (GRCm39)	S81P	probably damaging	Het
Celsr1	A	G	15: 85,816,658 (GRCm39)	Y1762H	probably benign	Het
Cklf	A	G	8: 104,983,983 (GRCm39)	T49A	possibly damaging	Het
Col12a1	T	G	9: 79,600,820 (GRCm39)	I755L	probably benign	Het
Cts3	G	A	13: 61,715,368 (GRCm39)	Q140*	probably null	Het
Ddx1	A	T	12: 13,294,967 (GRCm39)		probably null	Het
Dnah3	C	A	7: 119,570,402 (GRCm39)	E2262*	probably null	Het
Dnah5	A	G	15: 28,290,294 (GRCm39)	N1228S	probably benign	Het
Dsg1a	G	A	18: 20,464,561 (GRCm39)	R352Q	probably damaging	Het
Efcab5	A	G	11: 77,042,679 (GRCm39)	F25L	probably damaging	Het
Efhd1	T	A	1: 87,192,404 (GRCm39)	V78D	probably damaging	Het
Eif5a2	T	C	3: 28,847,967 (GRCm39)		probably null	Het
Elp2	T	A	18: 24,744,983 (GRCm39)	V101D	possibly damaging	Het
Enpp2	A	T	15: 54,773,592 (GRCm39)		probably null	Het
F5	A	G	1: 164,007,089 (GRCm39)	T298A	probably damaging	Het
Fbxo21	G	T	5: 118,146,129 (GRCm39)	R584L	probably benign	Het
Fbxw22	G	T	9: 109,211,196 (GRCm39)	F368L	possibly damaging	Het
Gcn1	T	C	5: 115,720,356 (GRCm39)	I409T	probably benign	Het
Gm12887	T	C	4: 121,473,655 (GRCm39)	Y65C	probably damaging	Het
Gria4	G	A	9: 4,537,637 (GRCm39)	Q224*	probably null	Het
Hdac5	C	T	11: 102,089,631 (GRCm39)	V860M	probably damaging	Het
Ino80	G	A	2: 119,212,417 (GRCm39)	R1302C	probably damaging	Het
Kcns2	A	T	15: 34,838,966 (GRCm39)	I110F	probably damaging	Het
Lrig3	A	G	10: 125,846,036 (GRCm39)	T822A	probably damaging	Het
Mapk6	T	C	9: 75,302,851 (GRCm39)	D214G	probably damaging	Het
Mcm2	A	T	6: 88,869,060 (GRCm39)	L264Q	probably benign	Het
Mpnd	A	T	17: 56,317,455 (GRCm39)	Y64F	probably damaging	Het
Muc1	T	A	3: 89,139,079 (GRCm39)	M520K	possibly damaging	Het
Muc4	T	A	16: 32,577,276 (GRCm39)	S189T	probably benign	Het
Myh13	T	C	11: 67,242,945 (GRCm39)	S953P	possibly damaging	Het
Ncf2	A	T	1: 152,706,230 (GRCm39)	M281L	probably benign	Het
Nipal2	A	G	15: 34,648,841 (GRCm39)	I116T	probably damaging	Het
Nptn	T	C	9: 58,531,015 (GRCm39)	L46P	probably benign	Het
Or2b6	A	T	13: 21,823,214 (GRCm39)	S160T	probably damaging	Het
Or4k77	A	G	2: 111,199,552 (GRCm39)	T192A	probably benign	Het
Or51ag1	C	A	7: 103,155,896 (GRCm39)	V86F	probably damaging	Het
Or5ae1	T	A	7: 84,565,325 (GRCm39)	F113I	probably damaging	Het
Pgr	A	T	9: 8,902,069 (GRCm39)	Y534F	possibly damaging	Het
Pip4k2a	A	T	2: 18,877,093 (GRCm39)		probably null	Het
Pkd1l2	C	G	8: 117,767,514 (GRCm39)	V1259L	probably benign	Het
Ppp1r12a	A	G	10: 108,085,426 (GRCm39)	E457G	probably damaging	Het
Rasa4	T	A	5: 136,133,491 (GRCm39)	V650D	probably benign	Het
Rem2	C	T	14: 54,713,766 (GRCm39)		probably benign	Het
Rps18-ps6	A	T	13: 97,896,868 (GRCm39)	Y77N	possibly damaging	Het
Sdc1	G	A	12: 8,840,409 (GRCm39)	R62Q	possibly damaging	Het
Sdk1	A	G	5: 141,934,261 (GRCm39)	E366G	possibly damaging	Het
Setd2	T	A	9: 110,433,248 (GRCm39)	H2406Q	probably damaging	Het
Slc30a5	A	G	13: 100,949,891 (GRCm39)	V397A	probably benign	Het
Slc36a2	A	T	11: 55,075,739 (GRCm39)	L16H	possibly damaging	Het
Slc44a1	T	C	4: 53,542,468 (GRCm39)	V334A	probably benign	Het
Sox8	A	T	17: 25,786,456 (GRCm39)	Y416N	possibly damaging	Het
Speg	T	C	1: 75,387,807 (GRCm39)	V1416A	possibly damaging	Het
Stimate	T	C	14: 30,586,391 (GRCm39)	L72S	possibly damaging	Het
Stk24	T	A	14: 121,574,983 (GRCm39)	I42F	probably damaging	Het
Tasor2	A	G	13: 3,634,498 (GRCm39)		probably null	Het
Tcerg1	T	A	18: 42,685,646 (GRCm39)	L661Q	possibly damaging	Het
Tpp1	G	A	7: 105,396,880 (GRCm39)	R417W	probably damaging	Het
Trim12a	T	A	7: 103,955,264 (GRCm39)	D153V	possibly damaging	Het
Trpm2	T	C	10: 77,778,778 (GRCm39)	N396S	probably benign	Het
Ttn	T	C	2: 76,637,427 (GRCm39)	K5695R	probably damaging	Het
Ttn	G	A	2: 76,640,631 (GRCm39)	R11960C	probably damaging	Het
Tulp3	A	C	6: 128,310,906 (GRCm39)		probably null	Het
Uaca	T	A	9: 60,779,438 (GRCm39)	L1273H	probably damaging	Het
Usp33	A	G	3: 152,073,919 (GRCm39)	E255G	probably damaging	Het
Vmn2r54	T	G	7: 12,350,138 (GRCm39)		probably null	Het
Vwa8	C	T	14: 79,145,670 (GRCm39)	R116C	probably damaging	Het
Wnt5b	A	T	6: 119,423,315 (GRCm39)	F116L	probably benign	Het
Zbtb12	CTTCAT	CTTCATTCAT	17: 35,115,284 (GRCm39)		probably null	Het
Zbtb12	TCATC	TCATCCATC	17: 35,115,286 (GRCm39)		probably null	Het
Zfp408	G	A	2: 91,476,353 (GRCm39)	T367I	probably damaging	Het
Zfp512b	G	A	2: 181,230,286 (GRCm39)	A480V	possibly damaging	Het
Zfp560	T	C	9: 20,258,949 (GRCm39)	T638A	probably benign	Het
Zfp932	G	T	5: 110,156,854 (GRCm39)	G151V	probably damaging	Het
Zpbp	T	C	11: 11,302,696 (GRCm39)	K320E	probably damaging	Het
Zranb2	C	T	3: 157,243,277 (GRCm39)	P91L	probably damaging	Het

Other mutations in Cdcp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01757:Cdcp1	APN	9	123,009,066 (GRCm39)	nonsense	probably null
IGL01883:Cdcp1	APN	9	123,012,663 (GRCm39)	missense	probably benign	0.18
IGL02029:Cdcp1	APN	9	123,012,899 (GRCm39)	splice site	probably benign
IGL02115:Cdcp1	APN	9	123,014,462 (GRCm39)	missense	probably damaging	1.00
IGL02516:Cdcp1	APN	9	123,002,702 (GRCm39)	missense	possibly damaging	0.86
IGL02709:Cdcp1	APN	9	123,002,879 (GRCm39)	missense	probably damaging	1.00
IGL03263:Cdcp1	APN	9	123,009,152 (GRCm39)	missense	probably benign	0.12
IGL03406:Cdcp1	APN	9	123,014,378 (GRCm39)	missense	probably benign	0.00
R0242:Cdcp1	UTSW	9	123,009,237 (GRCm39)	missense	probably benign	0.00
R0242:Cdcp1	UTSW	9	123,009,237 (GRCm39)	missense	probably benign	0.00
R0939:Cdcp1	UTSW	9	123,012,755 (GRCm39)	missense	probably damaging	1.00
R1411:Cdcp1	UTSW	9	123,019,177 (GRCm39)	missense	probably damaging	0.99
R1460:Cdcp1	UTSW	9	123,009,092 (GRCm39)	missense	possibly damaging	0.69
R1538:Cdcp1	UTSW	9	123,002,653 (GRCm39)	missense	probably damaging	1.00
R1660:Cdcp1	UTSW	9	123,014,427 (GRCm39)	missense	probably benign	0.09
R1794:Cdcp1	UTSW	9	123,044,896 (GRCm39)	missense	probably benign
R1794:Cdcp1	UTSW	9	123,019,159 (GRCm39)	missense	probably benign	0.37
R2472:Cdcp1	UTSW	9	123,014,172 (GRCm39)	missense	probably benign	0.07
R3961:Cdcp1	UTSW	9	123,011,446 (GRCm39)	missense	possibly damaging	0.73
R3962:Cdcp1	UTSW	9	123,011,446 (GRCm39)	missense	possibly damaging	0.73
R4288:Cdcp1	UTSW	9	123,012,693 (GRCm39)	missense	probably damaging	0.99
R4888:Cdcp1	UTSW	9	123,011,194 (GRCm39)	intron	probably benign
R4953:Cdcp1	UTSW	9	123,009,088 (GRCm39)	missense	probably benign	0.00
R5236:Cdcp1	UTSW	9	123,014,258 (GRCm39)	missense	probably damaging	1.00
R5546:Cdcp1	UTSW	9	123,007,094 (GRCm39)	missense	probably damaging	1.00
R5848:Cdcp1	UTSW	9	123,012,770 (GRCm39)	missense	possibly damaging	0.87
R5903:Cdcp1	UTSW	9	123,002,837 (GRCm39)	nonsense	probably null
R6052:Cdcp1	UTSW	9	123,014,396 (GRCm39)	missense	probably benign	0.04
R6344:Cdcp1	UTSW	9	123,011,447 (GRCm39)	missense	possibly damaging	0.69
R6904:Cdcp1	UTSW	9	123,002,980 (GRCm39)	missense	probably benign
R7038:Cdcp1	UTSW	9	123,002,662 (GRCm39)	missense	probably damaging	1.00
R7092:Cdcp1	UTSW	9	123,012,678 (GRCm39)	missense	probably benign	0.20
R7262:Cdcp1	UTSW	9	123,002,680 (GRCm39)	missense	probably damaging	1.00
R7275:Cdcp1	UTSW	9	123,014,119 (GRCm39)	missense	possibly damaging	0.79
R7294:Cdcp1	UTSW	9	123,006,986 (GRCm39)	missense	probably benign	0.01
R7373:Cdcp1	UTSW	9	123,006,965 (GRCm39)	missense	probably damaging	1.00
R7394:Cdcp1	UTSW	9	123,002,878 (GRCm39)	missense	probably damaging	1.00
R7527:Cdcp1	UTSW	9	123,014,172 (GRCm39)	missense	probably benign	0.26
R7674:Cdcp1	UTSW	9	123,045,071 (GRCm39)	start gained	probably benign
R7680:Cdcp1	UTSW	9	123,012,584 (GRCm39)	missense	probably damaging	1.00
R8079:Cdcp1	UTSW	9	123,002,855 (GRCm39)	missense	probably damaging	1.00
R8355:Cdcp1	UTSW	9	123,002,888 (GRCm39)	missense	probably benign	0.16
R8749:Cdcp1	UTSW	9	123,019,027 (GRCm39)	missense	probably benign	0.02
R8770:Cdcp1	UTSW	9	123,006,926 (GRCm39)	missense	possibly damaging	0.73
R8964:Cdcp1	UTSW	9	123,012,561 (GRCm39)	nonsense	probably null
R9241:Cdcp1	UTSW	9	123,014,301 (GRCm39)	missense	probably damaging	1.00
R9520:Cdcp1	UTSW	9	123,012,736 (GRCm39)	missense	possibly damaging	0.87
X0028:Cdcp1	UTSW	9	123,014,249 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGATCATGAATGCACGCCCTGAC -3'
(R):5'- CTACTTGGCACAGTGAGCACACA -3'

Sequencing Primer
(F):5'- CTGACTGGCAGGCCAAG -3'
(R):5'- gcacatgaatattggctacctac -3'

Posted On

2014-05-09