Mutagenetix > Incidental Mutation

Incidental Mutation 'R1674:Snapc4'

187871

Institutional Source

Beutler Lab

Gene Symbol

Snapc4

Ensembl Gene

ENSMUSG00000036281

Gene Name

small nuclear RNA activating complex, polypeptide 4

Synonyms

5730436L13Rik

MMRRC Submission

039710-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1674 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

26252777-26270665 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 26266209 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 178 (T178A)

Ref Sequence

ENSEMBL: ENSMUSP00000109750 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035427] [ENSMUST00000114115]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000035427
AA Change: T170A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000041767
Gene: ENSMUSG00000036281
AA Change: T170A

Domain	Start	End	E-Value	Type
low complexity region	33	52	N/A	INTRINSIC
low complexity region	60	72	N/A	INTRINSIC
coiled coil region	93	119	N/A	INTRINSIC
low complexity region	200	212	N/A	INTRINSIC
SANT	219	290	2.37e1	SMART
SANT	293	343	4.38e-10	SMART
SANT	345	397	3.05e-9	SMART
SANT	400	449	8.24e-15	SMART
SANT	452	501	7.8e-16	SMART
low complexity region	516	547	N/A	INTRINSIC
Blast:SANT	550	753	1e-23	BLAST
low complexity region	893	909	N/A	INTRINSIC
low complexity region	925	947	N/A	INTRINSIC
low complexity region	971	983	N/A	INTRINSIC
low complexity region	988	1007	N/A	INTRINSIC
low complexity region	1157	1169	N/A	INTRINSIC
low complexity region	1176	1190	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000114115
AA Change: T178A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000109750
Gene: ENSMUSG00000036281
AA Change: T178A

Domain	Start	End	E-Value	Type
coiled coil region	3	29	N/A	INTRINSIC
low complexity region	41	60	N/A	INTRINSIC
low complexity region	68	80	N/A	INTRINSIC
coiled coil region	101	127	N/A	INTRINSIC
low complexity region	208	220	N/A	INTRINSIC
SANT	227	298	2.37e1	SMART
SANT	301	351	4.38e-10	SMART
SANT	353	405	3.05e-9	SMART
SANT	408	457	8.24e-15	SMART
SANT	460	509	7.8e-16	SMART
low complexity region	524	555	N/A	INTRINSIC
Blast:SANT	558	761	1e-23	BLAST
low complexity region	901	917	N/A	INTRINSIC
low complexity region	933	955	N/A	INTRINSIC
low complexity region	979	991	N/A	INTRINSIC
low complexity region	996	1015	N/A	INTRINSIC
low complexity region	1165	1177	N/A	INTRINSIC
low complexity region	1184	1198	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000123934

SMART Domains

Protein: ENSMUSP00000122456
Gene: ENSMUSG00000036281

Domain	Start	End	E-Value	Type
SANT	47	99	3.05e-9	SMART
SANT	102	151	8.24e-15	SMART
SANT	154	203	7.8e-16	SMART
low complexity region	218	249	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124843

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125198

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133778

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144871

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148024

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149850

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150121

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149316

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155643

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.1%

Validation Efficiency

100% (91/91)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the largest subunit of the small nuclear RNA-activating protein (SNAP) complex. The encoded protein contains a Myb DNA-binding domain, and is essential for RNA polymerase II and III polymerase transcription from small nuclear RNA promoters. A mutation in this gene is associated with ankylosing spondylitis. [provided by RefSeq, Jul 2016]

Allele List at MGI

Other mutations in this stock

Total: 89 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930579G24Rik	A	G	3: 79,538,451 (GRCm39)	T66A	probably benign	Het
5430401F13Rik	A	T	6: 131,529,766 (GRCm39)	Q120L	unknown	Het
Akirin1	A	G	4: 123,637,256 (GRCm39)	S110P	possibly damaging	Het
Ankmy2	T	A	12: 36,237,668 (GRCm39)	S256T	probably benign	Het
Areg	T	C	5: 91,291,485 (GRCm39)	F143L	probably damaging	Het
Arhgap42	A	G	9: 9,006,585 (GRCm39)	S604P	probably damaging	Het
Arid1a	A	G	4: 133,416,571 (GRCm39)	V1068A	unknown	Het
Arid4a	G	A	12: 71,122,112 (GRCm39)	S509N	probably benign	Het
Atoh1	T	G	6: 64,706,914 (GRCm39)	I203S	possibly damaging	Het
Atp5mg	T	C	9: 44,825,957 (GRCm39)	T69A	possibly damaging	Het
Baz1b	A	G	5: 135,233,965 (GRCm39)	E164G	probably damaging	Het
Baz2b	A	T	2: 59,743,336 (GRCm39)	V1545E	possibly damaging	Het
Best1	A	G	19: 9,970,590 (GRCm39)		probably null	Het
Casp8	T	A	1: 58,883,575 (GRCm39)	I314N	probably damaging	Het
Ccdc13	T	C	9: 121,638,208 (GRCm39)	T26A	probably damaging	Het
Ccr6	A	T	17: 8,475,049 (GRCm39)	I85L	probably damaging	Het
Cdh10	A	T	15: 18,985,152 (GRCm39)	N272I	probably benign	Het
Cdh10	T	A	15: 19,013,416 (GRCm39)	I672K	probably damaging	Het
Cdk17	A	T	10: 93,057,492 (GRCm39)	E163V	probably benign	Het
Chsy1	T	C	7: 65,821,411 (GRCm39)	F549L	probably damaging	Het
CN725425	T	C	15: 91,131,124 (GRCm39)	Y420H	possibly damaging	Het
Cpt1b	A	T	15: 89,306,535 (GRCm39)	M281K	possibly damaging	Het
Crlf2	A	G	5: 109,706,669 (GRCm39)		probably null	Het
Ctif	T	C	18: 75,770,251 (GRCm39)	T45A	probably benign	Het
Ddx31	T	C	2: 28,748,828 (GRCm39)	F252S	probably damaging	Het
Dennd2d	T	C	3: 106,399,833 (GRCm39)	I242T	probably benign	Het
Dennd5b	A	G	6: 148,899,782 (GRCm39)	F1205S	probably damaging	Het
Dop1a	T	C	9: 86,418,213 (GRCm39)	S1981P	probably damaging	Het
Dsg1b	A	T	18: 20,532,578 (GRCm39)	T541S	probably benign	Het
Dst	T	A	1: 34,262,876 (GRCm39)		probably null	Het
Dysf	T	C	6: 84,156,697 (GRCm39)	V1508A	probably benign	Het
Erf	A	T	7: 24,944,731 (GRCm39)	L200Q	possibly damaging	Het
Erich3	A	G	3: 154,468,260 (GRCm39)		probably benign	Het
Esrrb	C	T	12: 86,561,225 (GRCm39)	L320F	probably damaging	Het
Fap	T	A	2: 62,349,349 (GRCm39)	D508V	probably benign	Het
Fdft1	A	C	14: 63,402,034 (GRCm39)	N48K	probably benign	Het
Fdps	A	G	3: 89,008,037 (GRCm39)	V94A	probably benign	Het
Fes	A	T	7: 80,027,686 (GRCm39)	H819Q	probably benign	Het
Foxd1	G	T	13: 98,491,347 (GRCm39)	D74Y	unknown	Het
Gm136	A	T	4: 34,746,662 (GRCm39)		probably benign	Het
Gm5919	T	A	9: 83,765,338 (GRCm39)	L58*	probably null	Het
Gm6871	C	T	7: 41,223,059 (GRCm39)	V10I	possibly damaging	Het
Isy1	T	C	6: 87,811,469 (GRCm39)	R29G	probably damaging	Het
Kif16b	T	A	2: 142,554,873 (GRCm39)	K653*	probably null	Het
Kif17	A	G	4: 138,028,569 (GRCm39)	T706A	probably benign	Het
Kif18b	G	T	11: 102,803,886 (GRCm39)	P425T	probably benign	Het
Lama1	T	A	17: 68,098,239 (GRCm39)	V1812E	probably benign	Het
Lama5	A	G	2: 179,843,780 (GRCm39)	V430A	probably benign	Het
Lclat1	A	G	17: 73,546,776 (GRCm39)	E231G	probably damaging	Het
Lig4	T	C	8: 10,021,692 (GRCm39)	D696G	probably benign	Het
Mylpf	T	A	7: 126,813,309 (GRCm39)	V151E	probably damaging	Het
Naa16	A	T	14: 79,624,497 (GRCm39)	M1K	probably null	Het
Ndufaf6	T	C	4: 11,070,264 (GRCm39)	K119R	probably benign	Het
Nt5c1b	T	C	12: 10,420,055 (GRCm39)		probably benign	Het
Or14a260	G	A	7: 85,984,765 (GRCm39)	P280S	probably damaging	Het
Or4a27	A	G	2: 88,559,601 (GRCm39)	V114A	probably damaging	Het
Or5t17	T	C	2: 86,832,577 (GRCm39)	V88A	probably benign	Het
Or8k33	T	A	2: 86,384,204 (GRCm39)	D88V	probably damaging	Het
Or9i16	T	A	19: 13,864,954 (GRCm39)	I207L	probably benign	Het
Otud4	A	G	8: 80,399,776 (GRCm39)	N830S	probably benign	Het
Pdcd10	A	C	3: 75,448,486 (GRCm39)	M26R	probably damaging	Het
Pitpnc1	A	G	11: 107,117,071 (GRCm39)	V223A	possibly damaging	Het
Pkp2	A	G	16: 16,058,422 (GRCm39)	D368G	possibly damaging	Het
Pla1a	A	T	16: 38,235,172 (GRCm39)	M174K	probably benign	Het
Polr2b	A	G	5: 77,474,470 (GRCm39)	K436E	possibly damaging	Het
Pwwp4a	G	T	X: 72,171,261 (GRCm39)	G218C	probably damaging	Het
Rdh16	A	G	10: 127,637,226 (GRCm39)	M54V	probably benign	Het
Sall2	C	A	14: 52,551,293 (GRCm39)	C632F	probably damaging	Het
Sart1	T	A	19: 5,435,853 (GRCm39)	I120F	probably damaging	Het
Slco1a1	A	T	6: 141,881,661 (GRCm39)	M157K	probably damaging	Het
Sox6	T	C	7: 115,400,654 (GRCm39)	I63V	probably benign	Het
Spin1	T	A	13: 51,303,135 (GRCm39)	Y243N	probably damaging	Het
Stmnd1	T	C	13: 46,453,097 (GRCm39)	Y258H	possibly damaging	Het
Tex13b	A	T	X: 139,710,819 (GRCm39)	N184K	probably benign	Het
Tgm5	T	C	2: 120,902,025 (GRCm39)	T215A	possibly damaging	Het
Tnks2	A	G	19: 36,849,022 (GRCm39)	T165A	probably benign	Het
Top2a	A	T	11: 98,900,099 (GRCm39)	F667Y	probably damaging	Het
Tpo	T	C	12: 30,150,567 (GRCm39)	M438V	probably benign	Het
Tyw1	A	G	5: 130,298,169 (GRCm39)	R237G	probably benign	Het
Unc5c	G	A	3: 141,463,598 (GRCm39)	V240I	possibly damaging	Het
Unc80	A	C	1: 66,548,467 (GRCm39)	T580P	probably damaging	Het
Upp2	G	A	2: 58,680,076 (GRCm39)	E301K	probably benign	Het
Utp18	A	G	11: 93,766,879 (GRCm39)		probably null	Het
Vmn1r23	T	C	6: 57,903,046 (GRCm39)	D244G	possibly damaging	Het
Vps13c	T	A	9: 67,760,985 (GRCm39)	L51*	probably null	Het
Xpnpep3	A	G	15: 81,314,968 (GRCm39)	T223A	probably benign	Het
Zfp28	T	A	7: 6,397,942 (GRCm39)	H792Q	possibly damaging	Het
Zfp804a	A	G	2: 82,089,168 (GRCm39)	K999R	probably benign	Het
Zkscan16	G	A	4: 58,948,918 (GRCm39)	V158M	possibly damaging	Het

Other mutations in Snapc4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00162:Snapc4	APN	2	26,259,324 (GRCm39)	missense	probably benign
IGL01730:Snapc4	APN	2	26,253,736 (GRCm39)	splice site	probably null
IGL01958:Snapc4	APN	2	26,256,452 (GRCm39)	unclassified	probably benign
IGL02354:Snapc4	APN	2	26,257,319 (GRCm39)	unclassified	probably benign
IGL02425:Snapc4	APN	2	26,258,212 (GRCm39)	missense	probably damaging	1.00
IGL02812:Snapc4	APN	2	26,259,384 (GRCm39)	missense	probably benign	0.03
IGL02951:Snapc4	APN	2	26,260,847 (GRCm39)	missense	probably benign	0.33
R0011:Snapc4	UTSW	2	26,254,825 (GRCm39)	missense	probably benign	0.03
R0409:Snapc4	UTSW	2	26,257,228 (GRCm39)	missense	probably benign	0.37
R0932:Snapc4	UTSW	2	26,264,658 (GRCm39)	missense	probably damaging	1.00
R1878:Snapc4	UTSW	2	26,266,165 (GRCm39)	critical splice donor site	probably null
R3722:Snapc4	UTSW	2	26,255,440 (GRCm39)	missense	probably benign
R3886:Snapc4	UTSW	2	26,255,510 (GRCm39)	nonsense	probably null
R3887:Snapc4	UTSW	2	26,255,510 (GRCm39)	nonsense	probably null
R3888:Snapc4	UTSW	2	26,255,510 (GRCm39)	nonsense	probably null
R3889:Snapc4	UTSW	2	26,255,510 (GRCm39)	nonsense	probably null
R4638:Snapc4	UTSW	2	26,255,314 (GRCm39)	missense	probably damaging	1.00
R4663:Snapc4	UTSW	2	26,264,193 (GRCm39)	missense	possibly damaging	0.77
R4879:Snapc4	UTSW	2	26,256,004 (GRCm39)	missense	possibly damaging	0.93
R4922:Snapc4	UTSW	2	26,259,245 (GRCm39)	missense	probably benign
R5385:Snapc4	UTSW	2	26,264,515 (GRCm39)	missense	probably benign	0.44
R5525:Snapc4	UTSW	2	26,259,538 (GRCm39)	small deletion	probably benign
R5762:Snapc4	UTSW	2	26,268,618 (GRCm39)	missense	probably damaging	1.00
R5839:Snapc4	UTSW	2	26,255,546 (GRCm39)	missense	probably benign	0.01
R6300:Snapc4	UTSW	2	26,268,563 (GRCm39)	missense	probably benign	0.14
R6422:Snapc4	UTSW	2	26,258,315 (GRCm39)	missense	probably benign	0.00
R6843:Snapc4	UTSW	2	26,263,611 (GRCm39)	missense	probably benign	0.03
R7044:Snapc4	UTSW	2	26,259,965 (GRCm39)	missense	probably damaging	1.00
R7341:Snapc4	UTSW	2	26,259,273 (GRCm39)	missense	probably benign	0.01
R7727:Snapc4	UTSW	2	26,263,446 (GRCm39)	missense	probably damaging	1.00
R7941:Snapc4	UTSW	2	26,266,730 (GRCm39)	missense	probably damaging	0.98
R8277:Snapc4	UTSW	2	26,255,722 (GRCm39)	missense	probably benign	0.05
R8311:Snapc4	UTSW	2	26,268,546 (GRCm39)	missense	probably benign
R8323:Snapc4	UTSW	2	26,254,711 (GRCm39)	missense	probably benign	0.15
R8777:Snapc4	UTSW	2	26,259,375 (GRCm39)	missense	probably benign	0.00
R8777-TAIL:Snapc4	UTSW	2	26,259,375 (GRCm39)	missense	probably benign	0.00
R8855:Snapc4	UTSW	2	26,264,545 (GRCm39)	missense	probably damaging	1.00
R9069:Snapc4	UTSW	2	26,260,805 (GRCm39)	nonsense	probably null
R9362:Snapc4	UTSW	2	26,254,865 (GRCm39)	missense	probably damaging	0.99
R9718:Snapc4	UTSW	2	26,268,533 (GRCm39)	missense	probably damaging	1.00
R9780:Snapc4	UTSW	2	26,267,019 (GRCm39)	missense	possibly damaging	0.94
X0010:Snapc4	UTSW	2	26,259,973 (GRCm39)	missense	probably damaging	1.00
X0011:Snapc4	UTSW	2	26,259,973 (GRCm39)	missense	probably damaging	1.00
X0014:Snapc4	UTSW	2	26,259,973 (GRCm39)	missense	probably damaging	1.00
X0017:Snapc4	UTSW	2	26,259,973 (GRCm39)	missense	probably damaging	1.00
X0021:Snapc4	UTSW	2	26,259,973 (GRCm39)	missense	probably damaging	1.00
X0023:Snapc4	UTSW	2	26,259,973 (GRCm39)	missense	probably damaging	1.00
X0028:Snapc4	UTSW	2	26,259,973 (GRCm39)	missense	probably damaging	1.00
X0033:Snapc4	UTSW	2	26,259,973 (GRCm39)	missense	probably damaging	1.00
X0064:Snapc4	UTSW	2	26,259,973 (GRCm39)	missense	probably damaging	1.00
X0067:Snapc4	UTSW	2	26,259,973 (GRCm39)	missense	probably damaging	1.00
Z1176:Snapc4	UTSW	2	26,258,234 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CAAGTGGACAGCCCCAGTGATAAAG -3'
(R):5'- TCTCAAACTGCTGATGCCCTTGTG -3'

Sequencing Primer
(F):5'- GCCCCAGTGATAAAGTCCTG -3'
(R):5'- GGGTCATGTCCAGAACTTTTCAATC -3'

Posted On

2014-05-09