Mutagenetix > Incidental Mutation

Incidental Mutation 'R1677:Cfap69'

188168

Institutional Source

Beutler Lab

Gene Symbol

Cfap69

Ensembl Gene

ENSMUSG00000040473

Gene Name

cilia and flagella associated protein 69

Synonyms

A330021E22Rik

MMRRC Submission

039713-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1677 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

5629284-5714232 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 5632457 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 15 (N15K)

Ref Sequence

ENSEMBL: ENSMUSP00000120771 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054865] [ENSMUST00000132510] [ENSMUST00000148347] [ENSMUST00000155048] [ENSMUST00000196165]

AlphaFold

Q8BH53

Predicted Effect

probably damaging
Transcript: ENSMUST00000054865
AA Change: N846K

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000053206
Gene: ENSMUSG00000040473
AA Change: N846K

Domain	Start	End	E-Value	Type
low complexity region	2	16	N/A	INTRINSIC
low complexity region	847	860	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000124734
AA Change: N73K

SMART Domains

Protein: ENSMUSP00000119859
Gene: ENSMUSG00000040473
AA Change: N73K

Domain	Start	End	E-Value	Type
low complexity region	75	88	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000132510

SMART Domains

Protein: ENSMUSP00000122569
Gene: ENSMUSG00000040473

Domain	Start	End	E-Value	Type
low complexity region	2	16	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000148347
AA Change: N382K

PolyPhen 2 Score 0.816 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000119944
Gene: ENSMUSG00000040473
AA Change: N382K

Domain	Start	End	E-Value	Type
low complexity region	383	396	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000155048
AA Change: N15K

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

Predicted Effect

probably benign
Transcript: ENSMUST00000196165
AA Change: N675K

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000143393
Gene: ENSMUSG00000040473
AA Change: N675K

Domain	Start	End	E-Value	Type
low complexity region	2	16	N/A	INTRINSIC
low complexity region	676	689	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000199314

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.3%
20x: 92.6%

Validation Efficiency

100% (95/95)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit faster response kinetics and stimuli integration to olfactory stimulation and impaired olfaction a buried food pellet test with a background of the same odor. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 90 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700093K21Rik	A	T	11: 23,467,357 (GRCm39)	M92K	probably benign	Het
4931406C07Rik	T	C	9: 15,212,660 (GRCm39)		probably null	Het
A430005L14Rik	G	A	4: 154,045,357 (GRCm39)	V129M	probably damaging	Het
Actg2	T	C	6: 83,499,801 (GRCm39)	T150A	possibly damaging	Het
Actn1	A	T	12: 80,306,806 (GRCm39)	D20E	probably benign	Het
Alcam	C	T	16: 52,091,136 (GRCm39)	E461K	probably damaging	Het
Anapc1	G	A	2: 128,518,128 (GRCm39)	P242L	probably benign	Het
Ankrd49	A	T	9: 14,692,674 (GRCm39)	D163E	probably benign	Het
Atp8b5	G	A	4: 43,372,903 (GRCm39)	R1149Q	possibly damaging	Het
Cacnb3	G	T	15: 98,540,455 (GRCm39)	V328F	probably damaging	Het
Camk4	T	C	18: 33,309,275 (GRCm39)	I226T	probably damaging	Het
Ccdc148	T	C	2: 58,892,176 (GRCm39)	D172G	probably damaging	Het
Cdh12	A	G	15: 21,520,491 (GRCm39)	I319V	probably damaging	Het
Cenpc1	T	C	5: 86,209,857 (GRCm39)		probably benign	Het
Ckap2l	A	C	2: 129,127,087 (GRCm39)	S364A	possibly damaging	Het
Clic6	G	A	16: 92,324,972 (GRCm39)	G36R	probably damaging	Het
Col6a3	T	C	1: 90,749,583 (GRCm39)	Y417C	probably benign	Het
Cstf3	T	A	2: 104,494,623 (GRCm39)		probably benign	Het
Cyp4f39	G	A	17: 32,711,304 (GRCm39)	A484T	probably benign	Het
Dnah3	T	C	7: 119,527,963 (GRCm39)	N3829D	probably damaging	Het
Dntt	C	A	19: 41,017,923 (GRCm39)	P16T	probably benign	Het
Dym	T	A	18: 75,258,583 (GRCm39)	I447N	probably damaging	Het
Elmo1	T	C	13: 20,773,841 (GRCm39)	V617A	probably benign	Het
Elovl7	G	A	13: 108,419,160 (GRCm39)	G264D	probably damaging	Het
Epha7	T	A	4: 28,947,571 (GRCm39)	Y610*	probably null	Het
Fn1	T	C	1: 71,636,814 (GRCm39)	I178V	probably benign	Het
Fndc9	T	C	11: 46,129,152 (GRCm39)	Y224H	probably benign	Het
Gad1	T	C	2: 70,404,521 (GRCm39)	V137A	probably damaging	Het
Gapvd1	A	G	2: 34,590,773 (GRCm39)		probably null	Het
Gbp11	C	T	5: 105,475,277 (GRCm39)	C357Y	probably damaging	Het
Gcc1	G	A	6: 28,419,163 (GRCm39)	A390V	probably benign	Het
Gm6811	A	G	17: 21,314,185 (GRCm39)		noncoding transcript	Het
Htt	A	T	5: 34,985,918 (GRCm39)	D1063V	probably damaging	Het
Igfn1	C	T	1: 135,898,839 (GRCm39)	A576T	probably damaging	Het
Il12rb2	T	C	6: 67,280,485 (GRCm39)	Y240C	probably damaging	Het
Itga3	T	C	11: 94,946,585 (GRCm39)	D747G	probably damaging	Het
Kcnip2	A	C	19: 45,782,979 (GRCm39)	D134E	probably damaging	Het
Kif2b	C	A	11: 91,466,798 (GRCm39)	R495I	probably damaging	Het
Lef1	T	C	3: 130,993,938 (GRCm39)		probably benign	Het
Lias	C	T	5: 65,548,981 (GRCm39)	R4C	probably damaging	Het
Lpcat2	T	C	8: 93,591,560 (GRCm39)	V68A	probably benign	Het
Lrrc37	A	T	11: 103,505,768 (GRCm39)	S2067T	probably benign	Het
Lrrc8e	A	T	8: 4,284,190 (GRCm39)	K138N	probably damaging	Het
Map4k5	G	A	12: 69,852,082 (GRCm39)	H767Y	probably benign	Het
Mga	C	A	2: 119,791,333 (GRCm39)	T2406K	possibly damaging	Het
Mtx1	A	T	3: 89,116,648 (GRCm39)	S418T	probably benign	Het
Myh7	C	T	14: 55,224,973 (GRCm39)	M531I	probably benign	Het
Myorg	C	T	4: 41,497,947 (GRCm39)	R561H	probably benign	Het
Ncaph2	T	A	15: 89,255,427 (GRCm39)	M555K	probably damaging	Het
Nckap1	C	T	2: 80,348,286 (GRCm39)	S889N	probably benign	Het
Ncoa6	T	C	2: 155,244,584 (GRCm39)		probably benign	Het
Nrp2	A	G	1: 62,822,479 (GRCm39)	S691G	probably benign	Het
Odad2	T	C	18: 7,222,554 (GRCm39)	T572A	probably benign	Het
Odf2l	A	T	3: 144,845,543 (GRCm39)		probably null	Het
Or5aq6	T	A	2: 86,923,081 (GRCm39)	H220L	probably benign	Het
Pcdh20	A	G	14: 88,705,410 (GRCm39)	V630A	probably damaging	Het
Pebp4	T	C	14: 70,285,923 (GRCm39)		probably null	Het
Ppfia3	T	A	7: 45,006,090 (GRCm39)	M301L	probably benign	Het
Ppp1r21	C	A	17: 88,858,097 (GRCm39)	Q203K	probably benign	Het
Prr23a1	T	C	9: 98,725,406 (GRCm39)	V256A	probably benign	Het
Rbfox1	A	G	16: 7,110,091 (GRCm39)	R150G	possibly damaging	Het
Rnps1-ps	A	T	6: 7,982,943 (GRCm39)		noncoding transcript	Het
Robo3	T	C	9: 37,329,005 (GRCm39)	R1238G	possibly damaging	Het
Rp9	T	G	9: 22,365,097 (GRCm39)	Q35P	probably damaging	Het
Rsrc1	C	A	3: 67,262,808 (GRCm39)	A254E	probably damaging	Het
Shtn1	T	A	19: 58,998,222 (GRCm39)	K390N	probably damaging	Het
Sidt2	C	T	9: 45,864,517 (GRCm39)	V71I	probably benign	Het
Sirt7	A	G	11: 120,515,365 (GRCm39)	V97A	possibly damaging	Het
Slc14a2	A	G	18: 78,206,419 (GRCm39)	S466P	probably benign	Het
Slc2a10	T	A	2: 165,357,361 (GRCm39)	D340E	probably benign	Het
Slc36a2	A	C	11: 55,075,735 (GRCm39)	N17K	probably benign	Het
Slc4a10	A	C	2: 62,155,071 (GRCm39)	N1086T	probably benign	Het
Sptb	T	C	12: 76,676,423 (GRCm39)	D177G	probably damaging	Het
Srpk2	A	T	5: 23,730,748 (GRCm39)		probably null	Het
Sucla2	T	G	14: 73,830,121 (GRCm39)	V386G	probably damaging	Het
Susd1	G	T	4: 59,424,089 (GRCm39)	N45K	possibly damaging	Het
Tbxas1	T	C	6: 38,994,822 (GRCm39)		probably benign	Het
Topors	C	T	4: 40,261,776 (GRCm39)	E503K	probably damaging	Het
Trpv5	T	C	6: 41,634,731 (GRCm39)	R533G	probably benign	Het
Tshr	A	G	12: 91,504,115 (GRCm39)	H351R	possibly damaging	Het
Ube2f	G	A	1: 91,203,037 (GRCm39)	V94M	probably damaging	Het
Ugdh	A	G	5: 65,580,521 (GRCm39)	S216P	probably damaging	Het
Unc45b	T	A	11: 82,802,531 (GRCm39)		probably null	Het
Vmn1r226	A	G	17: 20,908,335 (GRCm39)	E189G	probably damaging	Het
Xrcc6	T	G	15: 81,913,900 (GRCm39)	D75E	probably benign	Het
Ypel1	A	G	16: 16,921,474 (GRCm39)	L70P	probably damaging	Het
Zcwpw1	A	T	5: 137,795,022 (GRCm39)	R73W	probably damaging	Het
Zfp219	T	C	14: 52,246,512 (GRCm39)	E160G	probably damaging	Het
Zfp804b	G	T	5: 7,229,533 (GRCm39)		probably benign	Het
Zscan22	C	A	7: 12,640,730 (GRCm39)	P325T	probably damaging	Het

Other mutations in Cfap69

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00094:Cfap69	APN	5	5,634,682 (GRCm39)	missense	probably damaging	1.00
IGL00234:Cfap69	APN	5	5,667,295 (GRCm39)	missense	probably benign	0.03
IGL00658:Cfap69	APN	5	5,675,857 (GRCm39)	missense	probably damaging	1.00
IGL00901:Cfap69	APN	5	5,669,162 (GRCm39)	splice site	probably benign
IGL01410:Cfap69	APN	5	5,696,979 (GRCm39)	missense	probably damaging	1.00
IGL01415:Cfap69	APN	5	5,696,979 (GRCm39)	missense	probably damaging	1.00
IGL01839:Cfap69	APN	5	5,676,027 (GRCm39)	nonsense	probably null
IGL01993:Cfap69	APN	5	5,631,284 (GRCm39)	missense	probably damaging	0.99
IGL02821:Cfap69	APN	5	5,714,017 (GRCm39)	missense	probably benign	0.01
IGL03212:Cfap69	APN	5	5,707,849 (GRCm39)	critical splice acceptor site	probably null
IGL03339:Cfap69	APN	5	5,636,436 (GRCm39)	splice site	probably benign
IGL03052:Cfap69	UTSW	5	5,639,206 (GRCm39)	missense	probably damaging	0.97
R0049:Cfap69	UTSW	5	5,663,734 (GRCm39)	missense	probably benign	0.45
R0049:Cfap69	UTSW	5	5,663,734 (GRCm39)	missense	probably benign	0.45
R0387:Cfap69	UTSW	5	5,639,303 (GRCm39)	missense	probably damaging	0.98
R0433:Cfap69	UTSW	5	5,699,853 (GRCm39)	missense	probably damaging	0.99
R0690:Cfap69	UTSW	5	5,713,951 (GRCm39)	missense	probably damaging	0.99
R0702:Cfap69	UTSW	5	5,694,465 (GRCm39)	missense	probably benign	0.27
R0718:Cfap69	UTSW	5	5,671,924 (GRCm39)	missense	probably damaging	1.00
R1525:Cfap69	UTSW	5	5,690,230 (GRCm39)	splice site	probably null
R1670:Cfap69	UTSW	5	5,636,409 (GRCm39)	missense	probably benign	0.27
R1857:Cfap69	UTSW	5	5,632,518 (GRCm39)	missense	possibly damaging	0.92
R1916:Cfap69	UTSW	5	5,713,970 (GRCm39)	missense	probably damaging	0.99
R1937:Cfap69	UTSW	5	5,643,818 (GRCm39)	missense	probably damaging	1.00
R2029:Cfap69	UTSW	5	5,654,306 (GRCm39)	missense	probably damaging	1.00
R2106:Cfap69	UTSW	5	5,645,979 (GRCm39)	missense	probably benign	0.05
R2177:Cfap69	UTSW	5	5,675,803 (GRCm39)	missense	probably damaging	1.00
R2261:Cfap69	UTSW	5	5,646,018 (GRCm39)	missense	probably damaging	0.99
R2939:Cfap69	UTSW	5	5,694,432 (GRCm39)	missense	probably damaging	0.99
R3706:Cfap69	UTSW	5	5,663,843 (GRCm39)	nonsense	probably null
R3876:Cfap69	UTSW	5	5,634,645 (GRCm39)	splice site	probably benign
R3893:Cfap69	UTSW	5	5,631,245 (GRCm39)	missense	probably damaging	1.00
R4033:Cfap69	UTSW	5	5,654,389 (GRCm39)	missense	possibly damaging	0.87
R4760:Cfap69	UTSW	5	5,696,939 (GRCm39)	missense	probably damaging	1.00
R4787:Cfap69	UTSW	5	5,696,934 (GRCm39)	critical splice donor site	probably null
R4932:Cfap69	UTSW	5	5,675,820 (GRCm39)	missense	probably damaging	1.00
R5215:Cfap69	UTSW	5	5,639,133 (GRCm39)	missense	possibly damaging	0.82
R5258:Cfap69	UTSW	5	5,654,271 (GRCm39)	splice site	probably null
R5596:Cfap69	UTSW	5	5,676,020 (GRCm39)	missense	probably damaging	1.00
R5673:Cfap69	UTSW	5	5,646,027 (GRCm39)	missense	possibly damaging	0.66
R5752:Cfap69	UTSW	5	5,639,204 (GRCm39)	missense	probably damaging	1.00
R5933:Cfap69	UTSW	5	5,690,183 (GRCm39)	missense	probably damaging	1.00
R6148:Cfap69	UTSW	5	5,713,996 (GRCm39)	missense	probably benign	0.03
R6511:Cfap69	UTSW	5	5,667,220 (GRCm39)	missense	probably damaging	0.98
R6550:Cfap69	UTSW	5	5,631,220 (GRCm39)	missense	probably benign	0.03
R6870:Cfap69	UTSW	5	5,671,958 (GRCm39)	missense	probably benign	0.26
R7455:Cfap69	UTSW	5	5,675,873 (GRCm39)	missense	possibly damaging	0.92
R7544:Cfap69	UTSW	5	5,645,936 (GRCm39)	missense	not run
R7547:Cfap69	UTSW	5	5,654,290 (GRCm39)	missense	possibly damaging	0.88
R7787:Cfap69	UTSW	5	5,639,260 (GRCm39)	missense	probably damaging	1.00
R8049:Cfap69	UTSW	5	5,669,085 (GRCm39)	intron	probably benign
R8110:Cfap69	UTSW	5	5,632,515 (GRCm39)	missense	possibly damaging	0.79
R8128:Cfap69	UTSW	5	5,646,034 (GRCm39)	missense	probably benign
R8306:Cfap69	UTSW	5	5,654,287 (GRCm39)	missense	probably benign	0.01
R9028:Cfap69	UTSW	5	5,696,958 (GRCm39)	missense	probably benign	0.02
R9106:Cfap69	UTSW	5	5,690,190 (GRCm39)	missense	possibly damaging	0.92
R9179:Cfap69	UTSW	5	5,676,064 (GRCm39)	missense	probably benign	0.30
R9199:Cfap69	UTSW	5	5,668,952 (GRCm39)	missense	possibly damaging	0.87
R9422:Cfap69	UTSW	5	5,699,851 (GRCm39)	missense	probably benign	0.00
R9585:Cfap69	UTSW	5	5,631,269 (GRCm39)	missense	possibly damaging	0.52
R9617:Cfap69	UTSW	5	5,639,164 (GRCm39)	missense	probably damaging	1.00
R9674:Cfap69	UTSW	5	5,697,021 (GRCm39)	missense	possibly damaging	0.68
R9697:Cfap69	UTSW	5	5,676,041 (GRCm39)	missense	possibly damaging	0.60
X0010:Cfap69	UTSW	5	5,694,503 (GRCm39)	splice site	probably null
Z1177:Cfap69	UTSW	5	5,636,384 (GRCm39)	missense	possibly damaging	0.94

Predicted Primers

PCR Primer
(F):5'- AGGGCACAGTTCTCTCTGGCTTAC -3'
(R):5'- AAACCGTTTTGACCTTACCGTTTGC -3'

Sequencing Primer
(F):5'- AGGAACATGATCCTGGCTTC -3'
(R):5'- aggcttctagcagcatgac -3'

Posted On

2014-05-09