Incidental Mutation 'R1679:Vmn1r29'
ID 188344
Institutional Source Beutler Lab
Gene Symbol Vmn1r29
Ensembl Gene ENSMUSG00000091734
Gene Name vomeronasal 1 receptor 29
Synonyms V1rc2
MMRRC Submission 039715-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.067) question?
Stock # R1679 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 58284282-58285193 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 58285003 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Phenylalanine at position 241 (Y241F)
Ref Sequence ENSEMBL: ENSMUSP00000154278 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000168416] [ENSMUST00000226971] [ENSMUST00000227761] [ENSMUST00000228038] [ENSMUST00000228909]
AlphaFold Q9EQ41
Predicted Effect probably damaging
Transcript: ENSMUST00000168416
AA Change: Y241F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000129069
Gene: ENSMUSG00000091734
AA Change: Y241F

DomainStartEndE-ValueType
Pfam:V1R 28 293 1.7e-53 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000226971
AA Change: Y241F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect probably damaging
Transcript: ENSMUST00000227761
AA Change: Y241F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect probably damaging
Transcript: ENSMUST00000228038
AA Change: Y241F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect probably damaging
Transcript: ENSMUST00000228909
AA Change: Y241F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 94.0%
Validation Efficiency 98% (51/52)
Allele List at MGI
Other mutations in this stock
Total: 47 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4921517D22Rik GCC GC 13: 59,839,412 (GRCm39) probably null Het
Adam6a A G 12: 113,508,376 (GRCm39) M250V probably benign Het
Adgre5 C A 8: 84,456,034 (GRCm39) R254L probably benign Het
Adgrv1 A T 13: 81,707,671 (GRCm39) L525Q probably damaging Het
Ano9 T A 7: 140,688,210 (GRCm39) I205F probably benign Het
Bmp5 T C 9: 75,746,877 (GRCm39) V245A probably benign Het
Capn8 T C 1: 182,441,032 (GRCm39) S489P probably damaging Het
Ccdc85a A G 11: 28,533,316 (GRCm39) L76P probably damaging Het
Cd164l2 A G 4: 132,948,810 (GRCm39) T49A probably benign Het
Cdc25c T C 18: 34,880,348 (GRCm39) T129A probably damaging Het
Cfap43 T C 19: 47,761,553 (GRCm39) D847G probably benign Het
Crim1 G A 17: 78,508,228 (GRCm39) A11T probably benign Het
Cul9 A T 17: 46,832,082 (GRCm39) L1449H possibly damaging Het
Cyp2a22 T A 7: 26,635,736 (GRCm39) K276* probably null Het
Cyp2c50 C A 19: 40,099,859 (GRCm39) T430K possibly damaging Het
Ddb2 C T 2: 91,064,595 (GRCm39) R105Q probably benign Het
Emilin1 T C 5: 31,077,543 (GRCm39) Y900H probably benign Het
Eml3 T C 19: 8,914,001 (GRCm39) F100L probably damaging Het
Eps8l2 G A 7: 140,940,970 (GRCm39) G542D probably damaging Het
Fbf1 A G 11: 116,041,843 (GRCm39) probably null Het
Gm21886 T C 18: 80,132,954 (GRCm39) Y68C probably damaging Het
H2-Q10 A G 17: 35,784,492 (GRCm39) probably benign Het
Hebp2 G T 10: 18,420,163 (GRCm39) T90K possibly damaging Het
Il1rl2 A G 1: 40,382,320 (GRCm39) T211A probably benign Het
Incenp T C 19: 9,872,778 (GRCm39) D16G unknown Het
Isg20l2 T A 3: 87,839,392 (GRCm39) M201K probably damaging Het
Kansl1 A T 11: 104,314,822 (GRCm39) S405R probably damaging Het
Kdsr T A 1: 106,680,956 (GRCm39) I81F probably benign Het
Leprotl1 T G 8: 34,607,986 (GRCm39) L7F probably damaging Het
Lonrf2 G A 1: 38,852,357 (GRCm39) P165S probably benign Het
Mtmr2 T A 9: 13,700,373 (GRCm39) I60K probably damaging Het
Mto1 A G 9: 78,372,245 (GRCm39) T572A probably benign Het
Nipbl G A 15: 8,332,396 (GRCm39) T2287I probably benign Het
Nutm2 A G 13: 50,623,422 (GRCm39) T40A probably benign Het
Nxf1 T C 19: 8,746,438 (GRCm39) S550P probably benign Het
Or5p4 A T 7: 107,680,859 (GRCm39) N286I probably damaging Het
Phactr1 G A 13: 43,210,756 (GRCm39) V193I possibly damaging Het
Phactr1 A T 13: 43,248,257 (GRCm39) Y317F possibly damaging Het
Pih1d1 T C 7: 44,809,250 (GRCm39) probably null Het
Rictor T C 15: 6,797,571 (GRCm39) I309T possibly damaging Het
Rif1 GCCACCA GCCA 2: 52,000,336 (GRCm39) probably benign Het
Ruvbl2 T C 7: 45,074,391 (GRCm39) D216G probably damaging Het
Slc20a2 T G 8: 23,028,846 (GRCm39) S106A possibly damaging Het
Srprb A G 9: 103,069,406 (GRCm39) probably benign Het
Stx11 A T 10: 12,817,580 (GRCm39) I48N probably damaging Het
Wdfy1 A T 1: 79,685,192 (GRCm39) C347* probably null Het
Zfp683 T C 4: 133,785,956 (GRCm39) V361A possibly damaging Het
Other mutations in Vmn1r29
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02504:Vmn1r29 APN 6 58,284,655 (GRCm39) missense probably benign 0.03
IGL03351:Vmn1r29 APN 6 58,284,735 (GRCm39) missense probably damaging 1.00
R0457:Vmn1r29 UTSW 6 58,285,072 (GRCm39) missense probably benign 0.35
R0594:Vmn1r29 UTSW 6 58,284,757 (GRCm39) missense probably benign 0.35
R0735:Vmn1r29 UTSW 6 58,284,717 (GRCm39) missense probably damaging 0.96
R1422:Vmn1r29 UTSW 6 58,284,871 (GRCm39) missense probably damaging 1.00
R1476:Vmn1r29 UTSW 6 58,284,663 (GRCm39) missense probably benign 0.23
R1831:Vmn1r29 UTSW 6 58,284,692 (GRCm39) nonsense probably null
R1925:Vmn1r29 UTSW 6 58,285,087 (GRCm39) missense possibly damaging 0.79
R1933:Vmn1r29 UTSW 6 58,284,405 (GRCm39) missense probably benign 0.03
R4582:Vmn1r29 UTSW 6 58,285,017 (GRCm39) missense probably damaging 0.98
R4677:Vmn1r29 UTSW 6 58,284,285 (GRCm39) missense probably benign 0.02
R4706:Vmn1r29 UTSW 6 58,285,136 (GRCm39) missense probably benign 0.00
R5023:Vmn1r29 UTSW 6 58,285,052 (GRCm39) nonsense probably null
R5542:Vmn1r29 UTSW 6 58,285,108 (GRCm39) missense probably benign 0.14
R5649:Vmn1r29 UTSW 6 58,284,676 (GRCm39) missense probably benign 0.13
R5656:Vmn1r29 UTSW 6 58,285,152 (GRCm39) missense possibly damaging 0.94
R5906:Vmn1r29 UTSW 6 58,284,736 (GRCm39) missense probably benign 0.19
R6078:Vmn1r29 UTSW 6 58,285,080 (GRCm39) missense probably benign 0.01
R6349:Vmn1r29 UTSW 6 58,284,412 (GRCm39) missense probably damaging 1.00
R7946:Vmn1r29 UTSW 6 58,284,834 (GRCm39) missense probably benign 0.18
R8554:Vmn1r29 UTSW 6 58,285,191 (GRCm39) makesense probably null
R8944:Vmn1r29 UTSW 6 58,284,274 (GRCm39) start gained probably benign
R8955:Vmn1r29 UTSW 6 58,284,284 (GRCm39) start codon destroyed probably null 1.00
R9268:Vmn1r29 UTSW 6 58,284,577 (GRCm39) missense probably damaging 1.00
R9688:Vmn1r29 UTSW 6 58,284,739 (GRCm39) missense probably benign 0.02
RF020:Vmn1r29 UTSW 6 58,284,528 (GRCm39) missense probably benign 0.01
U15987:Vmn1r29 UTSW 6 58,285,080 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- GCTGTCACAATCAGTCCCAGTACC -3'
(R):5'- TCTTCTTACCTCTGTGGGCACTAGG -3'

Sequencing Primer
(F):5'- ACAGTGTCAATCTCCAGAGATG -3'
(R):5'- CCTCTGTGGGCACTAGGAATATAC -3'
Posted On 2014-05-09