Mutagenetix > Incidental Mutation

Incidental Mutation 'R1689:Vsig10l'

189570

Institutional Source

Beutler Lab

Gene Symbol

Vsig10l

Ensembl Gene

ENSMUSG00000070604

Gene Name

V-set and immunoglobulin domain containing 10 like

Synonyms

2210412E05Rik

MMRRC Submission

039722-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.204) question?

Stock #

R1689 (G1)

Quality Score

177

Status

Not validated

Chromosome

Chromosomal Location

43112575-43121443 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 43114792 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 433 (T433I)

Ref Sequence

ENSEMBL: ENSMUSP00000103611 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000107977] [ENSMUST00000203042] [ENSMUST00000203633] [ENSMUST00000203769] [ENSMUST00000204680]

AlphaFold

D3YZF7

Predicted Effect

possibly damaging
Transcript: ENSMUST00000107977
AA Change: T433I

PolyPhen 2 Score 0.931 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000103611
Gene: ENSMUSG00000070604
AA Change: T433I

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
low complexity region	28	52	N/A	INTRINSIC
IG	183	285	1.92e0	SMART
IG	298	383	2.15e-3	SMART
IGc2	406	465	4.19e-6	SMART
Blast:IG_like	582	649	1e-13	BLAST
transmembrane domain	764	786	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000203042

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203152

Predicted Effect

probably benign
Transcript: ENSMUST00000203633

SMART Domains

Protein: ENSMUSP00000145061
Gene: ENSMUSG00000107482

Domain	Start	End	E-Value	Type
ETF	26	216	2.7e-65	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000203769
AA Change: T331I

PolyPhen 2 Score 0.704 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000144692
Gene: ENSMUSG00000070604
AA Change: T331I

Domain	Start	End	E-Value	Type
IG	81	183	8.1e-3	SMART
IG	196	281	9.2e-6	SMART
IGc2	304	363	1.8e-8	SMART
Blast:IG_like	480	547	9e-14	BLAST
transmembrane domain	662	684	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000204680

SMART Domains

Protein: ENSMUSP00000145493
Gene: ENSMUSG00000107482

Domain	Start	End	E-Value	Type
ETF	26	168	2.4e-17	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205247

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 93.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc8	T	C	7: 45,769,827 (GRCm39)	K896R	probably benign	Het
Adcy9	A	T	16: 4,115,426 (GRCm39)		probably null	Het
Adgre1	T	C	17: 57,756,921 (GRCm39)	F726S	probably benign	Het
Ahctf1	A	T	1: 179,595,948 (GRCm39)	S148T	probably damaging	Het
Aif1	G	A	17: 35,391,127 (GRCm39)	P44L	probably benign	Het
Ammecr1l	C	A	18: 31,913,741 (GRCm39)	A289D	probably benign	Het
Amotl1	T	C	9: 14,504,518 (GRCm39)	Y230C	probably damaging	Het
Armc6	A	T	8: 70,682,187 (GRCm39)	S65R	probably benign	Het
Atad2b	T	A	12: 5,084,575 (GRCm39)	Y1440*	probably null	Het
Atf6b	T	A	17: 34,869,276 (GRCm39)	D164E	probably damaging	Het
B4galt6	C	T	18: 20,839,553 (GRCm39)	S127N	probably benign	Het
Bcl11a	A	T	11: 24,113,167 (GRCm39)	Y170F	probably damaging	Het
Bcl11a	A	T	11: 24,114,406 (GRCm39)	D583V	possibly damaging	Het
Btnl1	T	A	17: 34,600,182 (GRCm39)	Y228*	probably null	Het
Cav2	A	G	6: 17,281,421 (GRCm39)	H21R	probably benign	Het
Celsr2	T	A	3: 108,314,620 (GRCm39)	D1135V	possibly damaging	Het
Cntnap1	A	C	11: 101,079,699 (GRCm39)		probably null	Het
Cysltr2	T	C	14: 73,267,470 (GRCm39)	D80G	possibly damaging	Het
Dclk2	C	T	3: 86,712,946 (GRCm39)	R503Q	possibly damaging	Het
Dgkh	A	T	14: 78,855,984 (GRCm39)	M363K	possibly damaging	Het
Eml5	C	T	12: 98,797,194 (GRCm39)	V1112M	probably damaging	Het
Entpd7	A	G	19: 43,713,915 (GRCm39)	T425A	probably damaging	Het
Ephx2	T	A	14: 66,324,475 (GRCm39)	K373*	probably null	Het
F5	G	C	1: 164,026,486 (GRCm39)	R1686P	probably damaging	Het
Fbxw10	A	T	11: 62,750,862 (GRCm39)	I482L	probably damaging	Het
Fbxw8	T	C	5: 118,215,682 (GRCm39)	S443G	probably damaging	Het
Fdft1	T	C	14: 63,394,138 (GRCm39)	E191G	probably benign	Het
Fgd2	A	G	17: 29,582,696 (GRCm39)	E26G	probably benign	Het
Gabra4	T	C	5: 71,790,885 (GRCm39)		probably null	Het
Gc	A	G	5: 89,589,059 (GRCm39)		probably null	Het
Heatr1	T	A	13: 12,439,506 (GRCm39)	D1361E	probably benign	Het
Hid1	A	G	11: 115,251,183 (GRCm39)	F118L	probably damaging	Het
Igsf8	G	T	1: 172,146,504 (GRCm39)	G564W	probably damaging	Het
Il12rb2	A	G	6: 67,313,744 (GRCm39)	V4A	probably benign	Het
Irak3	T	C	10: 119,982,457 (GRCm39)	E335G	probably damaging	Het
Itgb8	T	G	12: 119,134,555 (GRCm39)	Q504P	probably benign	Het
Kbtbd12	A	T	6: 88,595,567 (GRCm39)	Y88N	probably damaging	Het
Klk1b5	T	C	7: 43,869,969 (GRCm39)	I226T	probably damaging	Het
L3hypdh	A	T	12: 72,131,527 (GRCm39)	I135N	probably damaging	Het
Lrp2	G	T	2: 69,333,873 (GRCm39)	T1456K	probably benign	Het
Mrgprd	C	A	7: 144,875,454 (GRCm39)	Y108*	probably null	Het
Muc6	C	T	7: 141,234,265 (GRCm39)	G742D	probably damaging	Het
Nalcn	T	A	14: 123,522,666 (GRCm39)	I1572F	probably damaging	Het
Nceh1	A	G	3: 27,280,231 (GRCm39)	Y126C	probably damaging	Het
Or14j1	T	C	17: 38,146,495 (GRCm39)	S202P	possibly damaging	Het
Or1ak2	A	G	2: 36,827,989 (GRCm39)	N286S	probably damaging	Het
Or7d11	A	T	9: 19,966,422 (GRCm39)	N112K	possibly damaging	Het
Pacs1	G	T	19: 5,322,643 (GRCm39)		probably benign	Het
Pappa2	A	G	1: 158,784,968 (GRCm39)	L14P	probably damaging	Het
Pdlim2	C	T	14: 70,408,688 (GRCm39)	G176D	probably damaging	Het
Pramel17	T	A	4: 101,694,376 (GRCm39)	K169I	possibly damaging	Het
Ptpra	T	C	2: 130,345,412 (GRCm39)	F5L	probably benign	Het
Qrfprl	A	G	6: 65,358,591 (GRCm39)	N105S	possibly damaging	Het
Ralgapa1	A	G	12: 55,723,552 (GRCm39)	L2114P	possibly damaging	Het
Rif1	GCCACCA	GCCA	2: 52,000,336 (GRCm39)		probably benign	Het
Senp2	T	A	16: 21,845,416 (GRCm39)	Y217N	probably damaging	Het
Sned1	C	T	1: 93,211,094 (GRCm39)	R1061C	probably damaging	Het
Spag16	C	T	1: 70,500,277 (GRCm39)	T535I	probably benign	Het
Supt20	T	A	3: 54,619,583 (GRCm39)	L355*	probably null	Het
Tmem132b	A	G	5: 125,864,678 (GRCm39)	H928R	possibly damaging	Het
Tpo	A	T	12: 30,148,245 (GRCm39)	L552H	probably damaging	Het
Tsfm	A	T	10: 126,864,324 (GRCm39)	N130K	probably damaging	Het
Usp48	T	A	4: 137,383,418 (GRCm39)		probably null	Het
Vsig10	A	G	5: 117,490,825 (GRCm39)	D544G	probably benign	Het
Wdr81	A	G	11: 75,336,422 (GRCm39)	F1655L	probably damaging	Het
Wfdc3	T	A	2: 164,576,111 (GRCm39)	D60V	probably damaging	Het

Other mutations in Vsig10l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01319:Vsig10l	APN	7	43,114,678 (GRCm39)	missense	probably damaging	1.00
IGL01390:Vsig10l	APN	7	43,115,889 (GRCm39)	missense	probably damaging	0.97
IGL02401:Vsig10l	APN	7	43,113,468 (GRCm39)	missense	probably damaging	1.00
IGL02404:Vsig10l	APN	7	43,113,171 (GRCm39)	missense	possibly damaging	0.85
IGL02514:Vsig10l	APN	7	43,113,338 (GRCm39)	missense	probably benign	0.02
IGL02636:Vsig10l	APN	7	43,113,002 (GRCm39)	missense	possibly damaging	0.53
IGL02805:Vsig10l	APN	7	43,114,666 (GRCm39)	missense	probably damaging	1.00
IGL02823:Vsig10l	APN	7	43,115,888 (GRCm39)	missense	probably damaging	1.00
IGL02827:Vsig10l	APN	7	43,114,293 (GRCm39)	missense	probably damaging	1.00
R0111:Vsig10l	UTSW	7	43,117,525 (GRCm39)	missense	probably damaging	0.97
R0394:Vsig10l	UTSW	7	43,114,879 (GRCm39)	missense	probably damaging	0.97
R0465:Vsig10l	UTSW	7	43,116,866 (GRCm39)	missense	probably damaging	1.00
R0632:Vsig10l	UTSW	7	43,113,561 (GRCm39)	missense	probably damaging	0.97
R1991:Vsig10l	UTSW	7	43,116,892 (GRCm39)	missense	possibly damaging	0.89
R2103:Vsig10l	UTSW	7	43,116,892 (GRCm39)	missense	possibly damaging	0.89
R2358:Vsig10l	UTSW	7	43,118,185 (GRCm39)	missense	probably benign	0.00
R3015:Vsig10l	UTSW	7	43,116,881 (GRCm39)	missense	possibly damaging	0.73
R4024:Vsig10l	UTSW	7	43,117,510 (GRCm39)	missense	probably benign	0.33
R4031:Vsig10l	UTSW	7	43,114,798 (GRCm39)	missense	probably damaging	1.00
R4807:Vsig10l	UTSW	7	43,113,173 (GRCm39)	missense	possibly damaging	0.53
R5020:Vsig10l	UTSW	7	43,114,741 (GRCm39)	nonsense	probably null
R5261:Vsig10l	UTSW	7	43,120,274 (GRCm39)	missense	probably damaging	1.00
R5317:Vsig10l	UTSW	7	43,114,247 (GRCm39)	missense	probably damaging	1.00
R5426:Vsig10l	UTSW	7	43,114,247 (GRCm39)	missense	probably damaging	0.97
R5656:Vsig10l	UTSW	7	43,113,575 (GRCm39)	nonsense	probably null
R5842:Vsig10l	UTSW	7	43,118,396 (GRCm39)	missense	probably benign	0.15
R6012:Vsig10l	UTSW	7	43,117,439 (GRCm39)	missense	probably damaging	1.00
R6235:Vsig10l	UTSW	7	43,118,396 (GRCm39)	missense	probably benign	0.15
R6309:Vsig10l	UTSW	7	43,120,397 (GRCm39)	splice site	probably null
R6994:Vsig10l	UTSW	7	43,114,491 (GRCm39)	missense	possibly damaging	0.71
R7250:Vsig10l	UTSW	7	43,113,099 (GRCm39)	missense	probably benign
R7397:Vsig10l	UTSW	7	43,117,431 (GRCm39)	missense	probably damaging	1.00
R7767:Vsig10l	UTSW	7	43,113,141 (GRCm39)	missense	probably damaging	0.96
R7956:Vsig10l	UTSW	7	43,117,494 (GRCm39)	missense	probably benign
R8086:Vsig10l	UTSW	7	43,114,876 (GRCm39)	missense	possibly damaging	0.92
R8139:Vsig10l	UTSW	7	43,113,153 (GRCm39)	missense	probably benign	0.00
R8297:Vsig10l	UTSW	7	43,113,531 (GRCm39)	missense	possibly damaging	0.50
R8341:Vsig10l	UTSW	7	43,113,378 (GRCm39)	missense	probably damaging	1.00
R8519:Vsig10l	UTSW	7	43,114,326 (GRCm39)	missense	probably benign	0.33
R8925:Vsig10l	UTSW	7	43,116,020 (GRCm39)	missense	probably benign	0.41
R8927:Vsig10l	UTSW	7	43,116,020 (GRCm39)	missense	probably benign	0.41
R8948:Vsig10l	UTSW	7	43,117,623 (GRCm39)	missense	possibly damaging	0.53
R9157:Vsig10l	UTSW	7	43,112,948 (GRCm39)	missense
R9203:Vsig10l	UTSW	7	43,112,657 (GRCm39)	start codon destroyed	probably null
R9481:Vsig10l	UTSW	7	43,112,795 (GRCm39)	nonsense	probably null
X0028:Vsig10l	UTSW	7	43,112,788 (GRCm39)	utr 3 prime	probably benign
X0067:Vsig10l	UTSW	7	43,116,914 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGAGAAGTGAGCCCAATGTCTGTG -3'
(R):5'- TGTCCCACCTCACCTATGAAGGTC -3'

Sequencing Primer
(F):5'- GTGAGTTCTTTAACAGTCCAACC -3'
(R):5'- TTTGCTGACACCCAGGAC -3'

Posted On

2014-05-14