Mutagenetix > Incidental Mutation

Incidental Mutation 'R0021:Nkapd1'

19017

Institutional Source

Beutler Lab

Gene Symbol

Nkapd1

Ensembl Gene

ENSMUSG00000059820

Gene Name

NKAP domain containing 1

Synonyms

LOC270156, AU019823

MMRRC Submission

038316-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.801) question?

Stock #

R0021 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

50516542-50528567 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 50521725 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 65 (D65E)

Ref Sequence

ENSEMBL: ENSMUSP00000133259 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000131351] [ENSMUST00000145139] [ENSMUST00000147671] [ENSMUST00000155435] [ENSMUST00000171462]

AlphaFold

E9PUQ3

Predicted Effect

probably damaging
Transcript: ENSMUST00000131351
AA Change: D65E

PolyPhen 2 Score 0.964 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000123319
Gene: ENSMUSG00000059820
AA Change: D65E

Domain	Start	End	E-Value	Type
low complexity region	142	175	N/A	INTRINSIC
low complexity region	198	216	N/A	INTRINSIC
low complexity region	224	256	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000145139
AA Change: D65E

PolyPhen 2 Score 0.705 (Sensitivity: 0.86; Specificity: 0.92)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000147671
AA Change: D65E

PolyPhen 2 Score 0.834 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000117265
Gene: ENSMUSG00000059820
AA Change: D65E

Domain	Start	End	E-Value	Type
low complexity region	142	175	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000155435
AA Change: D65E

PolyPhen 2 Score 0.964 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000121198
Gene: ENSMUSG00000059820
AA Change: D65E

Domain	Start	End	E-Value	Type
low complexity region	142	175	N/A	INTRINSIC
low complexity region	198	214	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000171462
AA Change: D65E

PolyPhen 2 Score 0.964 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000133259
Gene: ENSMUSG00000059820
AA Change: D65E

Domain	Start	End	E-Value	Type
Pfam:NKAP	86	163	5.2e-26	PFAM
low complexity region	198	216	N/A	INTRINSIC
low complexity region	224	256	N/A	INTRINSIC

Meta Mutation Damage Score

0.0716

Coding Region Coverage

1x: 84.2%
3x: 78.9%
10x: 65.7%
20x: 50.3%

Validation Efficiency

96% (92/96)

Allele List at MGI

Other mutations in this stock

Total: 42 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310016G11Rik	A	G	7: 44,326,620 (GRCm39)		noncoding transcript	Het
Abcc5	T	A	16: 20,197,411 (GRCm39)	K647*	probably null	Het
Aplp1	A	G	7: 30,135,241 (GRCm39)		probably benign	Het
Baiap3	T	C	17: 25,462,643 (GRCm39)	E1105G	probably damaging	Het
Brinp3	T	G	1: 146,777,189 (GRCm39)	S545R	probably benign	Het
Btnl1	A	G	17: 34,598,468 (GRCm39)	E28G	probably benign	Het
Ccr6	G	A	17: 8,475,598 (GRCm39)	V268M	possibly damaging	Het
Clstn1	G	A	4: 149,719,253 (GRCm39)	V361M	probably damaging	Het
Col1a2	G	A	6: 4,518,822 (GRCm39)		probably benign	Het
D630045J12Rik	G	A	6: 38,160,902 (GRCm39)	Q1081*	probably null	Het
Dhx15	T	C	5: 52,314,830 (GRCm39)	T626A	probably damaging	Het
Dhx36	T	C	3: 62,385,016 (GRCm39)	I699V	possibly damaging	Het
Dnah9	A	G	11: 65,860,805 (GRCm39)	I2855T	probably benign	Het
Duxf4	C	A	10: 58,071,385 (GRCm39)	E276D	probably benign	Het
Fsip2	T	A	2: 82,830,201 (GRCm39)		probably benign	Het
Galnt11	A	T	5: 25,453,855 (GRCm39)	D27V	probably damaging	Het
Gm5134	T	A	10: 75,829,718 (GRCm39)	C335S	probably damaging	Het
Hdhd2	A	T	18: 77,058,311 (GRCm39)	K227N	probably damaging	Het
Itgb4	A	T	11: 115,870,453 (GRCm39)	D94V	possibly damaging	Het
Krtcap3	A	G	5: 31,410,303 (GRCm39)	H227R	probably benign	Het
Macf1	T	C	4: 123,369,370 (GRCm39)	H232R	probably damaging	Het
Map2k4	A	G	11: 65,603,110 (GRCm39)	I174T	probably damaging	Het
Mcc	C	G	18: 44,652,583 (GRCm39)		probably benign	Het
Mcm9	G	A	10: 53,413,997 (GRCm39)	T1099I	possibly damaging	Het
Nqo2	T	C	13: 34,165,490 (GRCm39)	I129T	probably benign	Het
Pdgfrb	T	A	18: 61,197,998 (GRCm39)		probably benign	Het
Phf7	C	T	14: 30,960,443 (GRCm39)		probably benign	Het
Plac8	T	A	5: 100,704,434 (GRCm39)	T88S	probably benign	Het
Prss52	T	G	14: 64,341,857 (GRCm39)	V16G	probably benign	Het
Psmb9	G	A	17: 34,403,277 (GRCm39)	A80V	probably benign	Het
Ptprk	T	A	10: 28,468,891 (GRCm39)	V1425E	probably damaging	Het
Scart2	G	A	7: 139,876,310 (GRCm39)	R594H	probably benign	Het
Scn2a	T	C	2: 65,500,859 (GRCm39)	V7A	possibly damaging	Het
Serpini1	T	C	3: 75,526,620 (GRCm39)	Y291H	probably damaging	Het
Setd6	A	G	8: 96,443,293 (GRCm39)	K19E	probably damaging	Het
Siah2	T	C	3: 58,583,713 (GRCm39)	H191R	probably benign	Het
Slc27a2	T	C	2: 126,409,806 (GRCm39)		probably benign	Het
Tbc1d10a	T	C	11: 4,163,680 (GRCm39)	C277R	probably damaging	Het
Trim55	A	C	3: 19,698,866 (GRCm39)	M32L	probably benign	Het
Unc5b	T	C	10: 60,614,698 (GRCm39)	T200A	probably benign	Het
Wrap53	A	T	11: 69,454,712 (GRCm39)	M219K	probably damaging	Het
Zfp790	G	A	7: 29,525,113 (GRCm39)		probably benign	Het

Other mutations in Nkapd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02879:Nkapd1	APN	9	50,520,671 (GRCm39)	critical splice donor site	probably null
IGL03182:Nkapd1	APN	9	50,523,698 (GRCm39)	missense	possibly damaging	0.91
R0021:Nkapd1	UTSW	9	50,521,725 (GRCm39)	missense	probably damaging	0.96
R0280:Nkapd1	UTSW	9	50,520,679 (GRCm39)	missense	probably damaging	1.00
R0304:Nkapd1	UTSW	9	50,519,222 (GRCm39)	missense	probably damaging	0.99
R1438:Nkapd1	UTSW	9	50,518,972 (GRCm39)	missense	possibly damaging	0.72
R1613:Nkapd1	UTSW	9	50,519,105 (GRCm39)	missense	probably damaging	1.00
R4941:Nkapd1	UTSW	9	50,518,809 (GRCm39)	missense	probably benign	0.00
R5983:Nkapd1	UTSW	9	50,519,142 (GRCm39)	missense	probably damaging	0.96
R6226:Nkapd1	UTSW	9	50,519,070 (GRCm39)	missense	possibly damaging	0.53
R6228:Nkapd1	UTSW	9	50,518,971 (GRCm39)	missense	possibly damaging	0.73
R6318:Nkapd1	UTSW	9	50,518,761 (GRCm39)	missense	probably benign	0.00
R6923:Nkapd1	UTSW	9	50,521,610 (GRCm39)	missense	probably benign
R7841:Nkapd1	UTSW	9	50,521,716 (GRCm39)	missense	probably damaging	0.98
R8325:Nkapd1	UTSW	9	50,521,608 (GRCm39)	missense	probably benign

Posted On

2013-03-25