Incidental Mutation 'R1711:Osbpl9'
ID 190535
Institutional Source Beutler Lab
Gene Symbol Osbpl9
Ensembl Gene ENSMUSG00000028559
Gene Name oxysterol binding protein-like 9
Synonyms ORP-9, 2600011I06Rik
MMRRC Submission 039744-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1711 (G1)
Quality Score 225
Status Not validated
Chromosome 4
Chromosomal Location 108918342-109059469 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 108923415 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Cysteine to Serine at position 495 (C495S)
Ref Sequence ENSEMBL: ENSMUSP00000124742 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000030288] [ENSMUST00000065977] [ENSMUST00000084366] [ENSMUST00000102736] [ENSMUST00000162787] [ENSMUST00000194478] [ENSMUST00000160774] [ENSMUST00000161363] [ENSMUST00000160271] [ENSMUST00000159545]
AlphaFold A2A8Z1
Predicted Effect probably benign
Transcript: ENSMUST00000030288
AA Change: C512S

PolyPhen 2 Score 0.334 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000030288
Gene: ENSMUSG00000028559
AA Change: C512S

DomainStartEndE-ValueType
PH 3 101 8.5e-17 SMART
low complexity region 253 274 N/A INTRINSIC
low complexity region 285 301 N/A INTRINSIC
low complexity region 349 362 N/A INTRINSIC
Pfam:Oxysterol_BP 377 729 7.3e-79 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000065977
SMART Domains Protein: ENSMUSP00000068328
Gene: ENSMUSG00000053510

DomainStartEndE-ValueType
low complexity region 139 165 N/A INTRINSIC
low complexity region 172 209 N/A INTRINSIC
Pfam:Peptidase_M16 210 348 1.1e-43 PFAM
Pfam:Peptidase_M16_C 373 559 2.3e-22 PFAM
Pfam:Peptidase_M16_C 849 1032 1.5e-14 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000084366
AA Change: C415S

PolyPhen 2 Score 0.406 (Sensitivity: 0.89; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000081396
Gene: ENSMUSG00000028559
AA Change: C415S

DomainStartEndE-ValueType
low complexity region 156 177 N/A INTRINSIC
low complexity region 188 204 N/A INTRINSIC
low complexity region 252 265 N/A INTRINSIC
Pfam:Oxysterol_BP 277 634 7.2e-82 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000102736
SMART Domains Protein: ENSMUSP00000099797
Gene: ENSMUSG00000053510

DomainStartEndE-ValueType
low complexity region 139 165 N/A INTRINSIC
low complexity region 172 209 N/A INTRINSIC
Pfam:Peptidase_M16 210 348 1.4e-43 PFAM
Pfam:Peptidase_M16_C 400 515 1.1e-9 PFAM
Pfam:Peptidase_M16_C 805 988 2e-14 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000126288
Predicted Effect noncoding transcript
Transcript: ENSMUST00000139412
Predicted Effect noncoding transcript
Transcript: ENSMUST00000150784
Predicted Effect possibly damaging
Transcript: ENSMUST00000162787
AA Change: C499S

PolyPhen 2 Score 0.947 (Sensitivity: 0.79; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000124370
Gene: ENSMUSG00000028559
AA Change: C499S

DomainStartEndE-ValueType
PH 3 101 8.5e-17 SMART
low complexity region 240 261 N/A INTRINSIC
low complexity region 272 288 N/A INTRINSIC
low complexity region 336 349 N/A INTRINSIC
Pfam:Oxysterol_BP 361 718 2.8e-82 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000194478
AA Change: C522S

PolyPhen 2 Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000141991
Gene: ENSMUSG00000028559
AA Change: C522S

DomainStartEndE-ValueType
PH 3 101 3.7e-19 SMART
low complexity region 263 284 N/A INTRINSIC
low complexity region 295 311 N/A INTRINSIC
low complexity region 359 372 N/A INTRINSIC
Pfam:Oxysterol_BP 384 741 2e-79 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000160774
AA Change: C495S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000124742
Gene: ENSMUSG00000028559
AA Change: C495S

DomainStartEndE-ValueType
PH 3 84 6.46e-8 SMART
low complexity region 236 257 N/A INTRINSIC
low complexity region 268 284 N/A INTRINSIC
low complexity region 332 345 N/A INTRINSIC
Pfam:Oxysterol_BP 357 714 2.8e-82 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000161363
AA Change: C432S

PolyPhen 2 Score 0.334 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000125714
Gene: ENSMUSG00000028559
AA Change: C432S

DomainStartEndE-ValueType
Blast:PH 13 34 3e-6 BLAST
low complexity region 173 194 N/A INTRINSIC
low complexity region 205 221 N/A INTRINSIC
low complexity region 269 282 N/A INTRINSIC
Pfam:Oxysterol_BP 294 651 2.2e-82 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000160271
AA Change: C402S

PolyPhen 2 Score 0.334 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000124112
Gene: ENSMUSG00000028559
AA Change: C402S

DomainStartEndE-ValueType
low complexity region 143 164 N/A INTRINSIC
low complexity region 175 191 N/A INTRINSIC
low complexity region 239 252 N/A INTRINSIC
Pfam:Oxysterol_BP 264 621 4.7e-82 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000155434
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159198
Predicted Effect probably benign
Transcript: ENSMUST00000159545
SMART Domains Protein: ENSMUSP00000123856
Gene: ENSMUSG00000028559

DomainStartEndE-ValueType
Blast:PH 3 54 6e-33 BLAST
SCOP:d1pls__ 4 46 9e-8 SMART
PDB:2KCJ|A 4 55 1e-10 PDB
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.6%
  • 20x: 93.6%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the oxysterol-binding protein (OSBP) family, a group of intracellular lipid receptors. Most members contain an N-terminal pleckstrin homology domain and a highly conserved C-terminal OSBP-like sterol-binding domain, although some members contain only the sterol-binding domain. This family member functions as a cholesterol transfer protein that regulates Golgi structure and function. Multiple transcript variants, most of which encode distinct isoforms, have been identified. Related pseudogenes have been identified on chromosomes 3, 11 and 12. [provided by RefSeq, Jul 2010]
Allele List at MGI
Other mutations in this stock
Total: 111 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2210408I21Rik C T 13: 77,418,039 (GRCm39) T741I possibly damaging Het
Aadacl4fm2 A T 4: 144,281,976 (GRCm39) I272K probably damaging Het
Acot3 A T 12: 84,100,347 (GRCm39) Q41L probably damaging Het
Actl7b G A 4: 56,740,165 (GRCm39) Q398* probably null Het
Adgrb2 C A 4: 129,886,417 (GRCm39) Q186K probably damaging Het
Akr1a1 A G 4: 116,495,171 (GRCm39) probably null Het
Ap3s2 A T 7: 79,530,238 (GRCm39) F192L probably damaging Het
Apobr T G 7: 126,184,151 (GRCm39) probably null Het
Arhgap5 A G 12: 52,566,128 (GRCm39) N1033S probably damaging Het
Arid3c G T 4: 41,725,947 (GRCm39) R219S probably damaging Het
Bves C T 10: 45,223,961 (GRCm39) T207M probably damaging Het
Cacna1d T C 14: 29,788,013 (GRCm39) K1619R probably damaging Het
Caps2 A T 10: 112,026,883 (GRCm39) D223V possibly damaging Het
Cd3g A C 9: 44,885,640 (GRCm39) L35R probably damaging Het
Cdh23 A T 10: 60,359,315 (GRCm39) V261E probably benign Het
Cfap54 T G 10: 92,846,882 (GRCm39) T1028P probably damaging Het
Ch25h C A 19: 34,451,686 (GRCm39) V281L probably benign Het
Cip2a A C 16: 48,837,849 (GRCm39) I850L probably benign Het
Clu G T 14: 66,218,354 (GRCm39) V405L possibly damaging Het
Col6a3 A T 1: 90,757,935 (GRCm39) H6Q probably damaging Het
Cps1 G A 1: 67,207,533 (GRCm39) probably null Het
Ctr9 T C 7: 110,654,870 (GRCm39) S1134P unknown Het
Cts7 C T 13: 61,500,624 (GRCm39) G308S probably damaging Het
Cyp2c39 C A 19: 39,555,335 (GRCm39) T385K probably damaging Het
Dennd5a A T 7: 109,517,919 (GRCm39) D596E probably benign Het
Disc1 T A 8: 125,851,349 (GRCm39) I413K probably benign Het
Dll3 C T 7: 27,993,922 (GRCm39) G505D probably damaging Het
Dnah3 A G 7: 119,677,794 (GRCm39) W377R probably damaging Het
Dop1b A G 16: 93,596,814 (GRCm39) D1792G probably damaging Het
Dpep3 T A 8: 106,700,325 (GRCm39) R460S probably benign Het
Ebf4 A G 2: 130,200,751 (GRCm39) N302S probably damaging Het
Efcab3 A G 11: 104,611,514 (GRCm39) K452R probably benign Het
Egflam T C 15: 7,319,396 (GRCm39) E194G possibly damaging Het
Ep400 A T 5: 110,841,174 (GRCm39) probably benign Het
Ercc6 T C 14: 32,248,133 (GRCm39) M228T probably damaging Het
Fbxo9 T C 9: 77,994,529 (GRCm39) T264A probably damaging Het
Fcrl5 C A 3: 87,364,721 (GRCm39) P486T possibly damaging Het
Fyb1 T C 15: 6,609,960 (GRCm39) F178L probably damaging Het
Gaa T A 11: 119,171,286 (GRCm39) I646N probably damaging Het
Gm5431 A T 11: 48,785,853 (GRCm39) V174E possibly damaging Het
Gnpat T G 8: 125,613,691 (GRCm39) probably null Het
Gucy1a2 G T 9: 3,759,622 (GRCm39) R476I probably benign Het
Hars1 A G 18: 36,904,156 (GRCm39) L241P probably damaging Het
Haus5 G A 7: 30,357,328 (GRCm39) Q399* probably null Het
Hephl1 T C 9: 14,970,542 (GRCm39) E984G probably damaging Het
Hmces C T 6: 87,898,574 (GRCm39) Q132* probably null Het
Hsp90b1 G T 10: 86,530,389 (GRCm39) T490K probably damaging Het
Idh2 T G 7: 79,748,906 (GRCm39) E125A probably damaging Het
Ipo13 G T 4: 117,761,719 (GRCm39) H465Q probably benign Het
Isca2 C A 12: 84,820,393 (GRCm39) T31K probably damaging Het
Itga9 T C 9: 118,527,529 (GRCm39) V560A probably benign Het
Jhy G A 9: 40,822,453 (GRCm39) Q562* probably null Het
Kcnj5 A G 9: 32,233,865 (GRCm39) I150T probably damaging Het
Kmt2a A G 9: 44,752,918 (GRCm39) I1419T unknown Het
Lix1 T C 17: 17,666,320 (GRCm39) F160L possibly damaging Het
Lonrf2 G A 1: 38,852,357 (GRCm39) P165S probably benign Het
Map4k1 A T 7: 28,688,777 (GRCm39) Q276L possibly damaging Het
Mmp9 G A 2: 164,791,342 (GRCm39) G171S probably damaging Het
Mvp C A 7: 126,594,907 (GRCm39) probably null Het
Mylk3 T A 8: 86,091,460 (GRCm39) E115V probably damaging Het
Nebl T A 2: 17,393,565 (GRCm39) T603S probably damaging Het
Nudt15 T C 14: 73,760,776 (GRCm39) D105G probably benign Het
Or12j2 A C 7: 139,915,912 (GRCm39) T46P possibly damaging Het
Or2w1b G A 13: 21,300,476 (GRCm39) V205I probably benign Het
Or51b6 T A 7: 103,555,906 (GRCm39) W87R probably damaging Het
Or52i2 G T 7: 102,319,369 (GRCm39) V81L probably damaging Het
Or52l1 A T 7: 104,829,967 (GRCm39) H199Q probably damaging Het
Or8g2b A G 9: 39,751,581 (GRCm39) M284V probably benign Het
Pamr1 A G 2: 102,471,197 (GRCm39) T507A probably benign Het
Pcdhb9 T A 18: 37,536,380 (GRCm39) C791* probably null Het
Pcgf6 T C 19: 47,038,957 (GRCm39) E101G probably damaging Het
Pdgfrl A T 8: 41,438,831 (GRCm39) I256F probably benign Het
Pdzd7 T C 19: 45,033,950 (GRCm39) R45G possibly damaging Het
Pecr C T 1: 72,316,568 (GRCm39) V46I possibly damaging Het
Pgr A G 9: 8,922,715 (GRCm39) probably null Het
Pik3c2a A T 7: 116,017,162 (GRCm39) Y198* probably null Het
Pp2d1 T A 17: 53,822,338 (GRCm39) M243L possibly damaging Het
Ppp1r1a T A 15: 103,441,919 (GRCm39) I50L possibly damaging Het
Proc T C 18: 32,260,459 (GRCm39) D222G probably benign Het
Ptprq T A 10: 107,370,560 (GRCm39) R2044* probably null Het
Ranbp2 T C 10: 58,296,341 (GRCm39) V326A probably benign Het
Reep6 T A 10: 80,169,815 (GRCm39) F122I possibly damaging Het
Rubcn C A 16: 32,663,471 (GRCm39) R388S probably damaging Het
Rusc1 A G 3: 88,996,600 (GRCm39) L62P probably damaging Het
Satb2 T C 1: 56,889,448 (GRCm39) N423S probably damaging Het
Scart1 G T 7: 139,800,522 (GRCm39) C101F probably damaging Het
Serpinb9d A G 13: 33,384,731 (GRCm39) K236R probably benign Het
Slc4a7 A G 14: 14,765,709 (GRCm38) R680G probably benign Het
Slitrk1 T A 14: 109,150,528 (GRCm39) Y61F probably benign Het
Son A G 16: 91,457,114 (GRCm39) probably benign Het
Sparc T A 11: 55,286,602 (GRCm39) probably null Het
Spon2 A G 5: 33,373,729 (GRCm39) F194S probably damaging Het
Spta1 A G 1: 174,068,608 (GRCm39) E2136G probably damaging Het
Stat4 T C 1: 52,146,084 (GRCm39) S746P probably damaging Het
Stk31 T A 6: 49,446,238 (GRCm39) S958R probably benign Het
Stom T A 2: 35,205,929 (GRCm39) I267F probably damaging Het
Stx12 A T 4: 132,585,788 (GRCm39) D197E probably damaging Het
Taok3 A T 5: 117,393,991 (GRCm39) N588I possibly damaging Het
Tgs1 A G 4: 3,598,658 (GRCm39) D657G probably damaging Het
Trim6 A G 7: 103,882,044 (GRCm39) T432A probably damaging Het
Trim72 C G 7: 127,603,757 (GRCm39) C34W probably damaging Het
Trpc4ap A T 2: 155,499,664 (GRCm39) I286N probably benign Het
Ttn A G 2: 76,693,905 (GRCm39) V321A possibly damaging Het
Utp4 T A 8: 107,645,352 (GRCm39) I583N probably damaging Het
Wdfy2 G T 14: 63,181,546 (GRCm39) M225I probably benign Het
Wfdc1 A G 8: 120,407,776 (GRCm39) T134A probably benign Het
Wnt9b A G 11: 103,622,954 (GRCm39) S150P probably damaging Het
Zbtb46 A T 2: 181,053,477 (GRCm39) F412I probably damaging Het
Zc3h15 G A 2: 83,491,492 (GRCm39) R240H probably benign Het
Zfp11 A T 5: 129,733,737 (GRCm39) Y575N probably benign Het
Zfp687 T C 3: 94,919,200 (GRCm39) M191V probably benign Het
Other mutations in Osbpl9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00722:Osbpl9 APN 4 108,929,207 (GRCm39) missense probably damaging 1.00
IGL00793:Osbpl9 APN 4 108,944,628 (GRCm39) missense probably damaging 0.99
IGL00809:Osbpl9 APN 4 108,990,960 (GRCm39) missense probably damaging 1.00
IGL02071:Osbpl9 APN 4 108,929,176 (GRCm39) missense probably damaging 1.00
IGL02547:Osbpl9 APN 4 108,925,680 (GRCm39) nonsense probably null
IGL02822:Osbpl9 APN 4 108,930,118 (GRCm39) missense probably damaging 1.00
IGL03074:Osbpl9 APN 4 108,929,158 (GRCm39) missense probably damaging 1.00
IGL03193:Osbpl9 APN 4 108,924,163 (GRCm39) missense possibly damaging 0.90
IGL03196:Osbpl9 APN 4 108,930,061 (GRCm39) missense probably damaging 1.00
IGL03306:Osbpl9 APN 4 109,029,529 (GRCm39) splice site probably benign
IGL03323:Osbpl9 APN 4 108,919,656 (GRCm39) splice site probably benign
Oblong UTSW 4 108,948,876 (GRCm39) missense possibly damaging 0.62
R0211:Osbpl9 UTSW 4 108,930,321 (GRCm39) missense probably damaging 1.00
R0368:Osbpl9 UTSW 4 108,924,129 (GRCm39) missense probably damaging 1.00
R0620:Osbpl9 UTSW 4 108,940,325 (GRCm39) missense probably damaging 1.00
R1439:Osbpl9 UTSW 4 108,958,353 (GRCm39) missense probably damaging 1.00
R1757:Osbpl9 UTSW 4 108,921,780 (GRCm39) missense probably damaging 1.00
R2237:Osbpl9 UTSW 4 109,013,854 (GRCm39) missense probably damaging 1.00
R2295:Osbpl9 UTSW 4 109,059,331 (GRCm39) missense probably damaging 0.99
R2418:Osbpl9 UTSW 4 108,923,415 (GRCm39) missense probably damaging 1.00
R3111:Osbpl9 UTSW 4 108,940,290 (GRCm39) missense probably benign 0.08
R4202:Osbpl9 UTSW 4 109,029,437 (GRCm39) intron probably benign
R4672:Osbpl9 UTSW 4 108,921,806 (GRCm39) missense possibly damaging 0.82
R4706:Osbpl9 UTSW 4 109,013,884 (GRCm39) missense probably damaging 1.00
R4856:Osbpl9 UTSW 4 108,925,564 (GRCm39) missense probably benign 0.38
R4886:Osbpl9 UTSW 4 108,925,564 (GRCm39) missense probably benign 0.38
R5035:Osbpl9 UTSW 4 108,923,364 (GRCm39) missense probably damaging 0.99
R5309:Osbpl9 UTSW 4 108,923,352 (GRCm39) missense probably damaging 1.00
R5400:Osbpl9 UTSW 4 108,919,497 (GRCm39) nonsense probably null
R5719:Osbpl9 UTSW 4 108,919,763 (GRCm39) nonsense probably null
R5810:Osbpl9 UTSW 4 108,943,571 (GRCm39) missense probably benign 0.00
R6237:Osbpl9 UTSW 4 109,013,899 (GRCm39) missense probably damaging 1.00
R6575:Osbpl9 UTSW 4 108,930,129 (GRCm39) missense possibly damaging 0.89
R6648:Osbpl9 UTSW 4 108,948,876 (GRCm39) missense possibly damaging 0.62
R6675:Osbpl9 UTSW 4 108,991,025 (GRCm39) splice site probably null
R7130:Osbpl9 UTSW 4 108,940,296 (GRCm39) missense probably benign
R7356:Osbpl9 UTSW 4 108,925,677 (GRCm39) nonsense probably null
R7615:Osbpl9 UTSW 4 108,943,536 (GRCm39) missense probably damaging 1.00
R7753:Osbpl9 UTSW 4 108,990,970 (GRCm39) missense possibly damaging 0.86
R7772:Osbpl9 UTSW 4 108,923,384 (GRCm39) missense probably damaging 0.99
R7788:Osbpl9 UTSW 4 108,919,691 (GRCm39) missense probably benign 0.41
R8083:Osbpl9 UTSW 4 108,943,572 (GRCm39) missense possibly damaging 0.74
R8143:Osbpl9 UTSW 4 108,922,906 (GRCm39) missense probably benign 0.12
R8323:Osbpl9 UTSW 4 108,965,119 (GRCm39) missense probably benign 0.01
R8331:Osbpl9 UTSW 4 108,923,378 (GRCm39) missense probably damaging 1.00
R8406:Osbpl9 UTSW 4 108,921,770 (GRCm39) missense possibly damaging 0.82
R8531:Osbpl9 UTSW 4 109,013,908 (GRCm39) missense probably damaging 1.00
R8715:Osbpl9 UTSW 4 108,959,773 (GRCm39) missense probably benign 0.21
R8888:Osbpl9 UTSW 4 108,930,333 (GRCm39) missense probably benign 0.03
R8895:Osbpl9 UTSW 4 108,930,333 (GRCm39) missense probably benign 0.03
R9079:Osbpl9 UTSW 4 108,920,644 (GRCm39) missense possibly damaging 0.48
R9379:Osbpl9 UTSW 4 108,940,399 (GRCm39) missense probably damaging 0.99
R9775:Osbpl9 UTSW 4 109,013,747 (GRCm39) intron probably benign
Z1177:Osbpl9 UTSW 4 108,965,077 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- TGCCTTCCATAGCCATTGGGGAAC -3'
(R):5'- AGAACAGGACACGTCTTAAACCTGC -3'

Sequencing Primer
(F):5'- GGTGATATAGTTTATACCCCACCCAG -3'
(R):5'- TGCGGGAGTTGCCATAGC -3'
Posted On 2014-05-14