Mutagenetix > Incidental Mutation

Incidental Mutation 'R1713:Ssrp1'

190737

Institutional Source

Beutler Lab

Gene Symbol

Ssrp1

Ensembl Gene

ENSMUSG00000027067

Gene Name

structure specific recognition protein 1

Synonyms

Hmgox, Hmgi-rs3, Hmg1-rs1, T160

MMRRC Submission

039746-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1713 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

84867578-84877453 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 84871104 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Asparagine at position 247 (H247N)

Ref Sequence

ENSEMBL: ENSMUSP00000127058 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000077798] [ENSMUST00000111613] [ENSMUST00000130729] [ENSMUST00000168266]

AlphaFold

Q08943

Predicted Effect

probably damaging
Transcript: ENSMUST00000077798
AA Change: H247N

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000076971
Gene: ENSMUSG00000027067
AA Change: H247N

Domain	Start	End	E-Value	Type
Pfam:SSrecog	74	285	1.7e-105	PFAM
Rtt106	338	428	4.76e-41	SMART
low complexity region	469	481	N/A	INTRINSIC
low complexity region	486	514	N/A	INTRINSIC
low complexity region	521	542	N/A	INTRINSIC
HMG	546	616	1.9e-27	SMART
low complexity region	621	691	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111613

SMART Domains

Protein: ENSMUSP00000107240
Gene: ENSMUSG00000027071

Domain	Start	End	E-Value	Type
Pfam:P2X_receptor	8	372	4.7e-162	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123467

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127069

Predicted Effect

probably damaging
Transcript: ENSMUST00000130729
AA Change: H247N

PolyPhen 2 Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000121639
Gene: ENSMUSG00000027067
AA Change: H247N

Domain	Start	End	E-Value	Type
Pfam:SSrecog	74	285	5.7e-106	PFAM
Rtt106	338	428	4.76e-41	SMART
low complexity region	469	481	N/A	INTRINSIC
low complexity region	486	514	N/A	INTRINSIC
low complexity region	521	542	N/A	INTRINSIC
HMG	546	616	1.9e-27	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135414

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142359

Predicted Effect

probably damaging
Transcript: ENSMUST00000168266
AA Change: H247N

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000127058
Gene: ENSMUSG00000027067
AA Change: H247N

Domain	Start	End	E-Value	Type
Pfam:SSrecog	75	284	8.8e-91	PFAM
Rtt106	338	428	4.76e-41	SMART
low complexity region	469	481	N/A	INTRINSIC
low complexity region	486	514	N/A	INTRINSIC
low complexity region	521	542	N/A	INTRINSIC
HMG	546	616	1.9e-27	SMART
low complexity region	621	691	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145097

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146530

Meta Mutation Damage Score

0.2417

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.7%
20x: 93.6%

Validation Efficiency

98% (96/98)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a subunit of a heterodimer that, along with SUPT16H, forms chromatin transcriptional elongation factor FACT. FACT interacts specifically with histones H2A/H2B to effect nucleosome disassembly and transcription elongation. FACT and cisplatin-damaged DNA may be crucial to the anticancer mechanism of cisplatin. This encoded protein contains a high mobility group box which most likely constitutes the structure recognition element for cisplatin-modified DNA. This protein also functions as a co-activator of the transcriptional activator p63. An alternatively spliced transcript variant of this gene has been described, but its full-length nature is not known. [provided by RefSeq, Jul 2008]
PHENOTYPE: Disruption of this gene is lethal resulting in death at some point between implantation and E5.5. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 90 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921539E11Rik	T	A	4: 103,127,964 (GRCm39)	I54F	possibly damaging	Het
Ackr1	A	T	1: 173,159,916 (GRCm39)	H134Q	probably benign	Het
Agtr1b	A	T	3: 20,370,473 (GRCm39)	F44L	probably benign	Het
Ahnak	G	A	19: 8,989,173 (GRCm39)	D3486N	possibly damaging	Het
Akap9	T	C	5: 4,089,345 (GRCm39)		probably null	Het
Anks6	T	A	4: 47,039,726 (GRCm39)	Q495L	probably benign	Het
Arpp21	A	G	9: 111,896,237 (GRCm39)	S684P	probably damaging	Het
Ash1l	A	G	3: 88,983,531 (GRCm39)	E2911G	probably damaging	Het
Avpi1	C	T	19: 42,113,248 (GRCm39)	E70K	probably damaging	Het
Btbd17	G	T	11: 114,686,650 (GRCm39)	P9T	probably benign	Het
C4b	A	G	17: 34,948,245 (GRCm39)		probably benign	Het
Carm1	T	C	9: 21,497,785 (GRCm39)	V385A	probably damaging	Het
Casd1	A	G	6: 4,624,104 (GRCm39)	D299G	probably damaging	Het
Clca3a1	T	A	3: 144,730,307 (GRCm39)	K179N	probably benign	Het
Col1a2	T	C	6: 4,538,691 (GRCm39)	S1204P	unknown	Het
Col24a1	C	T	3: 145,072,624 (GRCm39)	Q780*	probably null	Het
Cxadr	C	A	16: 78,131,133 (GRCm39)	N216K	probably damaging	Het
Daam1	C	T	12: 71,942,656 (GRCm39)	T40I	unknown	Het
Dab2	C	T	15: 6,459,182 (GRCm39)	P365S	possibly damaging	Het
Dnah1	A	T	14: 31,001,139 (GRCm39)	I2402N	probably damaging	Het
Dscaml1	T	A	9: 45,663,988 (GRCm39)	S1954R	possibly damaging	Het
Dync2h1	T	C	9: 7,131,891 (GRCm39)	T1639A	probably benign	Het
Ebf1	A	T	11: 44,815,393 (GRCm39)	I336F	probably damaging	Het
Ebna1bp2	A	G	4: 118,482,881 (GRCm39)	N290S	possibly damaging	Het
Gabra2	A	G	5: 71,171,906 (GRCm39)	I110T	probably benign	Het
Galk2	A	G	2: 125,773,210 (GRCm39)	N203S	probably benign	Het
Gria4	T	C	9: 4,424,448 (GRCm39)	T806A	probably benign	Het
Impg2	A	G	16: 56,080,889 (GRCm39)	T789A	probably benign	Het
Itga6	A	G	2: 71,617,546 (GRCm39)	T22A	probably benign	Het
Itgb4	T	A	11: 115,894,315 (GRCm39)	I1312N	probably damaging	Het
Kdm4c	A	G	4: 74,216,721 (GRCm39)	D160G	probably benign	Het
Kdr	A	G	5: 76,129,127 (GRCm39)	V173A	probably benign	Het
Kif14	T	C	1: 136,455,202 (GRCm39)	S1575P	probably benign	Het
Lcp1	G	A	14: 75,436,884 (GRCm39)		probably null	Het
Lipe	C	A	7: 25,084,750 (GRCm39)	S516I	probably damaging	Het
Lrrc61	G	A	6: 48,545,708 (GRCm39)	R177Q	possibly damaging	Het
Macf1	A	G	4: 123,272,487 (GRCm39)	I6429T	probably damaging	Het
Map3k4	C	T	17: 12,468,458 (GRCm39)	E1012K	probably benign	Het
Map3k5	T	C	10: 19,986,593 (GRCm39)	F936L	possibly damaging	Het
Mllt3	A	T	4: 87,701,901 (GRCm39)	N497K	probably damaging	Het
Moxd1	G	A	10: 24,157,394 (GRCm39)	G342D	probably damaging	Het
Mtdh	A	C	15: 34,114,985 (GRCm39)	Q202H	possibly damaging	Het
Nav1	A	G	1: 135,522,972 (GRCm39)		probably benign	Het
Nop56	T	C	2: 130,119,886 (GRCm39)	V109A	possibly damaging	Het
Obscn	T	C	11: 58,970,712 (GRCm39)	D2540G	probably damaging	Het
Omg	T	C	11: 79,393,679 (GRCm39)	I60V	probably benign	Het
Or10q12	A	T	19: 13,746,659 (GRCm39)	T318S	probably benign	Het
Or12e9	A	T	2: 87,202,290 (GRCm39)	Y138F	probably damaging	Het
Osbpl5	G	A	7: 143,248,110 (GRCm39)	H652Y	probably damaging	Het
Parvb	T	C	15: 84,182,192 (GRCm39)		probably benign	Het
Pcdhb3	A	C	18: 37,436,375 (GRCm39)	E780D	probably benign	Het
Pik3c3	A	G	18: 30,456,639 (GRCm39)	D723G	possibly damaging	Het
Prkdc	T	C	16: 15,612,958 (GRCm39)	V3172A	probably benign	Het
Psme4	G	T	11: 30,756,310 (GRCm39)	W272L	probably damaging	Het
Rem1	G	A	2: 152,476,455 (GRCm39)	V238M	probably damaging	Het
Rhobtb1	A	C	10: 69,108,601 (GRCm39)	S434R	probably benign	Het
Rhobtb1	G	C	10: 69,108,602 (GRCm39)	S434T	possibly damaging	Het
Rnf8	T	C	17: 29,853,735 (GRCm39)	F413S	probably damaging	Het
Rpn2	A	G	2: 157,156,888 (GRCm39)	N497S	probably damaging	Het
Rsbn1l	G	T	5: 21,156,488 (GRCm39)	P99Q	probably benign	Het
Serpinb3b	A	T	1: 107,083,164 (GRCm39)	M246K	probably benign	Het
Sgsm2	T	C	11: 74,787,652 (GRCm39)	E19G	probably null	Het
Shank1	A	G	7: 43,969,161 (GRCm39)	H352R	unknown	Het
Slc17a7	A	G	7: 44,819,728 (GRCm39)	I177V	probably benign	Het
Slc28a2	T	A	2: 122,281,494 (GRCm39)	F228I	probably damaging	Het
Slc35b4	C	T	6: 34,147,484 (GRCm39)	V35I	probably benign	Het
Slc38a1	T	C	15: 96,476,641 (GRCm39)	I407V	probably damaging	Het
Slc39a13	A	G	2: 90,893,442 (GRCm39)	V326A	probably damaging	Het
Slc44a5	T	C	3: 153,944,743 (GRCm39)	L120P	probably damaging	Het
Slfn3	T	C	11: 83,104,140 (GRCm39)	I214T	probably damaging	Het
Slitrk3	A	C	3: 72,957,024 (GRCm39)	S583A	probably benign	Het
Snx14	T	C	9: 88,297,728 (GRCm39)	Y180C	probably damaging	Het
Sorl1	T	A	9: 41,907,538 (GRCm39)	K1483I	probably benign	Het
Stk39	A	T	2: 68,137,460 (GRCm39)		probably benign	Het
Syde1	C	T	10: 78,421,530 (GRCm39)	G674R	probably damaging	Het
Tent4a	A	T	13: 69,651,170 (GRCm39)	I565N	probably benign	Het
Themis3	G	A	17: 66,862,848 (GRCm39)	S370L	probably benign	Het
Tll1	T	A	8: 64,554,907 (GRCm39)	N259Y	probably damaging	Het
Tnip2	T	G	5: 34,661,175 (GRCm39)		probably benign	Het
Top2b	T	C	14: 16,409,823 (GRCm38)	V830A	probably benign	Het
Trpm8	T	A	1: 88,292,802 (GRCm39)	N934K	probably damaging	Het
Ttc14	A	G	3: 33,857,069 (GRCm39)	Y179C	probably damaging	Het
Ttn	T	G	2: 76,573,965 (GRCm39)	I17316L	possibly damaging	Het
Tufm	T	C	7: 126,086,871 (GRCm39)	V52A	probably benign	Het
Vamp8	T	A	6: 72,365,270 (GRCm39)	N20I	probably benign	Het
Vmn1r170	A	T	7: 23,306,288 (GRCm39)	H230L	probably benign	Het
Vmn2r50	T	G	7: 9,771,731 (GRCm39)	T657P	probably damaging	Het
Xirp2	G	A	2: 67,342,762 (GRCm39)	G1668R	probably benign	Het
Zik1	C	A	7: 10,224,311 (GRCm39)	R262L	possibly damaging	Het
Zscan25	T	G	5: 145,220,501 (GRCm39)	Y99D	probably damaging	Het

Other mutations in Ssrp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01636:Ssrp1	APN	2	84,871,443 (GRCm39)	splice site	probably benign
IGL01935:Ssrp1	APN	2	84,877,056 (GRCm39)	makesense	probably null
IGL02226:Ssrp1	APN	2	84,870,705 (GRCm39)	missense	probably damaging	1.00
IGL02793:Ssrp1	APN	2	84,871,264 (GRCm39)	missense	probably damaging	1.00
IGL02875:Ssrp1	APN	2	84,871,264 (GRCm39)	missense	probably damaging	1.00
Dickcissel	UTSW	2	84,871,978 (GRCm39)	missense	probably damaging	0.96
Meadowlark	UTSW	2	84,871,450 (GRCm39)	critical splice acceptor site	probably null
PIT4131001:Ssrp1	UTSW	2	84,868,760 (GRCm39)	missense	probably damaging	1.00
R0313:Ssrp1	UTSW	2	84,871,898 (GRCm39)	missense	probably damaging	1.00
R0363:Ssrp1	UTSW	2	84,871,018 (GRCm39)	missense	probably damaging	0.99
R1234:Ssrp1	UTSW	2	84,872,607 (GRCm39)	missense	probably damaging	1.00
R1643:Ssrp1	UTSW	2	84,871,529 (GRCm39)	missense	possibly damaging	0.89
R2049:Ssrp1	UTSW	2	84,871,771 (GRCm39)	splice site	probably benign
R2113:Ssrp1	UTSW	2	84,873,350 (GRCm39)	splice site	probably null
R2291:Ssrp1	UTSW	2	84,872,660 (GRCm39)	critical splice donor site	probably null
R2471:Ssrp1	UTSW	2	84,872,642 (GRCm39)	missense	possibly damaging	0.95
R2965:Ssrp1	UTSW	2	84,871,930 (GRCm39)	missense	possibly damaging	0.46
R3552:Ssrp1	UTSW	2	84,874,736 (GRCm39)	missense	probably benign
R4060:Ssrp1	UTSW	2	84,871,978 (GRCm39)	missense	probably damaging	0.96
R4075:Ssrp1	UTSW	2	84,875,912 (GRCm39)	missense	possibly damaging	0.68
R4131:Ssrp1	UTSW	2	84,874,791 (GRCm39)	missense	probably null	0.28
R4326:Ssrp1	UTSW	2	84,870,561 (GRCm39)	intron	probably benign
R4357:Ssrp1	UTSW	2	84,871,495 (GRCm39)	missense	probably benign	0.22
R4400:Ssrp1	UTSW	2	84,868,285 (GRCm39)	missense	probably damaging	0.97
R4797:Ssrp1	UTSW	2	84,876,066 (GRCm39)	nonsense	probably null
R5293:Ssrp1	UTSW	2	84,872,596 (GRCm39)	nonsense	probably null
R5571:Ssrp1	UTSW	2	84,874,669 (GRCm39)	missense	probably damaging	0.99
R5592:Ssrp1	UTSW	2	84,875,863 (GRCm39)	missense	probably benign	0.00
R5743:Ssrp1	UTSW	2	84,871,512 (GRCm39)	nonsense	probably null
R5991:Ssrp1	UTSW	2	84,872,640 (GRCm39)	missense	possibly damaging	0.94
R6019:Ssrp1	UTSW	2	84,875,796 (GRCm39)	missense	probably damaging	1.00
R6133:Ssrp1	UTSW	2	84,875,683 (GRCm39)	intron	probably benign
R6157:Ssrp1	UTSW	2	84,871,072 (GRCm39)	missense	probably damaging	0.99
R6225:Ssrp1	UTSW	2	84,873,158 (GRCm39)	missense	probably benign	0.02
R6551:Ssrp1	UTSW	2	84,871,450 (GRCm39)	critical splice acceptor site	probably null
R6886:Ssrp1	UTSW	2	84,870,280 (GRCm39)	missense	probably benign	0.04
R7189:Ssrp1	UTSW	2	84,875,906 (GRCm39)	missense	probably benign	0.00
R7681:Ssrp1	UTSW	2	84,876,092 (GRCm39)	missense	probably benign
R7789:Ssrp1	UTSW	2	84,871,525 (GRCm39)	missense	probably damaging	1.00
R9074:Ssrp1	UTSW	2	84,875,811 (GRCm39)	missense	probably damaging	1.00
R9268:Ssrp1	UTSW	2	84,870,606 (GRCm39)	splice site	probably benign
R9467:Ssrp1	UTSW	2	84,872,610 (GRCm39)	missense	probably damaging	1.00
X0023:Ssrp1	UTSW	2	84,875,819 (GRCm39)	missense	probably benign	0.06
Z1088:Ssrp1	UTSW	2	84,870,997 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATGTTCCTCCCACGCAGGAAGATG -3'
(R):5'- ACGAGTTTGGCCCTGCTTGATG -3'

Sequencing Primer
(F):5'- TCTGTCAAAGGCAGATGTGATCC -3'
(R):5'- GCCCTGCTTGATGGGAGG -3'

Posted On

2014-05-14