Mutagenetix > Incidental Mutation

Incidental Mutation 'R1721:Atp2b1'

191479

Institutional Source

Beutler Lab

Gene Symbol

Atp2b1

Ensembl Gene

ENSMUSG00000019943

Gene Name

ATPase, Ca++ transporting, plasma membrane 1

Synonyms

PMCA1, 2810442I22Rik, E130111D10Rik

MMRRC Submission

039753-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1721 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

98750268-98862005 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 98832750 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 417 (V417A)

Ref Sequence

ENSEMBL: ENSMUSP00000151598 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020107] [ENSMUST00000219624]

AlphaFold

G5E829

Predicted Effect

possibly damaging
Transcript: ENSMUST00000020107
AA Change: V417A

PolyPhen 2 Score 0.779 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000020107
Gene: ENSMUSG00000019943
AA Change: V417A

Domain	Start	End	E-Value	Type
Cation_ATPase_N	50	126	1.8e-3	SMART
low complexity region	138	156	N/A	INTRINSIC
Pfam:E1-E2_ATPase	157	312	1.5e-28	PFAM
Pfam:E1-E2_ATPase	348	464	1.4e-13	PFAM
Pfam:HAD	472	806	6.9e-22	PFAM
Pfam:Cation_ATPase	492	614	8.8e-17	PFAM
Pfam:Hydrolase	605	809	5.8e-14	PFAM
Pfam:Hydrolase_3	764	842	7.2e-7	PFAM
transmembrane domain	855	877	N/A	INTRINSIC
Pfam:Cation_ATPase_C	879	1061	1.2e-47	PFAM
low complexity region	1079	1092	N/A	INTRINSIC
Pfam:ATP_Ca_trans_C	1103	1155	7.5e-31	PFAM
low complexity region	1176	1188	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000219090

Predicted Effect

probably damaging
Transcript: ENSMUST00000219624
AA Change: V417A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000220358

Meta Mutation Damage Score

0.2288

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.1%

Validation Efficiency

99% (87/88)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the family of P-type primary ion transport ATPases characterized by the formation of an aspartyl phosphate intermediate during the reaction cycle. These enzymes remove bivalent calcium ions from eukaryotic cells against very large concentration gradients and play a critical role in intracellular calcium homeostasis. The mammalian plasma membrane calcium ATPase isoforms are encoded by at least four separate genes and the diversity of these enzymes is further increased by alternative splicing of transcripts. The expression of different isoforms and splice variants is regulated in a developmental, tissue- and cell type-specific manner, suggesting that these pumps are functionally adapted to the physiological needs of particular cells and tissues. This gene encodes the plasma membrane calcium ATPase isoform 1. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice display embryonic lethality. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acin1	A	T	14: 54,901,995 (GRCm39)	V559E	probably benign	Het
Adamts20	A	G	15: 94,236,340 (GRCm39)	F844L	probably benign	Het
Adcy5	C	A	16: 35,118,794 (GRCm39)	D1048E	probably damaging	Het
Agrn	A	T	4: 156,259,630 (GRCm39)	C768*	probably null	Het
Aldh18a1	G	T	19: 40,553,282 (GRCm39)	Q487K	probably damaging	Het
Aldh3b1	G	A	19: 3,971,271 (GRCm39)		probably benign	Het
Asb18	T	G	1: 89,896,302 (GRCm39)	D246A	probably benign	Het
Bcl2l15	A	G	3: 103,745,914 (GRCm39)		probably null	Het
Brd10	A	T	19: 29,720,998 (GRCm39)	S743T	probably damaging	Het
Cage1	T	A	13: 38,207,309 (GRCm39)	K285*	probably null	Het
Ccn2	A	C	10: 24,472,695 (GRCm39)	T202P	probably damaging	Het
Cldn17	A	G	16: 88,303,444 (GRCm39)	L95P	probably damaging	Het
Cldn20	A	T	17: 3,583,157 (GRCm39)	D110V	probably damaging	Het
Cnot10	T	C	9: 114,444,067 (GRCm39)	T443A	probably benign	Het
Col14a1	T	A	15: 55,310,858 (GRCm39)		probably benign	Het
Col23a1	T	C	11: 51,418,716 (GRCm39)	Y135H	unknown	Het
Cse1l	T	C	2: 166,768,331 (GRCm39)	S210P	probably damaging	Het
Cspg4	T	G	9: 56,796,027 (GRCm39)	V1254G	probably damaging	Het
Dip2c	A	G	13: 9,709,404 (GRCm39)	T1415A	probably damaging	Het
Epc2	A	G	2: 49,422,117 (GRCm39)	Y337C	probably damaging	Het
Epha2	A	G	4: 141,049,963 (GRCm39)	S799G	probably damaging	Het
Fndc10	A	G	4: 155,779,355 (GRCm39)	Y133C	probably damaging	Het
Gli3	G	T	13: 15,900,882 (GRCm39)	S1423I	probably benign	Het
Gm6034	A	T	17: 36,354,045 (GRCm39)		probably benign	Het
Gmip	A	G	8: 70,263,882 (GRCm39)	S109G	probably damaging	Het
Grik2	C	A	10: 49,399,842 (GRCm39)	W296L	possibly damaging	Het
Gucy2d	T	A	7: 98,103,268 (GRCm39)	L504H	probably damaging	Het
Il6	T	A	5: 30,218,490 (GRCm39)	Y46N	possibly damaging	Het
Ints8	C	A	4: 11,241,684 (GRCm39)	C253F	probably damaging	Het
Itga9	A	G	9: 118,527,374 (GRCm39)		probably benign	Het
Kcna7	T	C	7: 45,056,345 (GRCm39)	V187A	possibly damaging	Het
Kdm5b	G	T	1: 134,540,919 (GRCm39)		probably benign	Het
Knl1	T	G	2: 118,906,815 (GRCm39)	S1635A	probably damaging	Het
Lce1b	A	G	3: 92,563,318 (GRCm39)	S72P	unknown	Het
Lox	T	G	18: 52,653,983 (GRCm39)		probably null	Het
Mdc1	A	G	17: 36,158,718 (GRCm39)	D366G	possibly damaging	Het
Meiob	T	C	17: 25,053,021 (GRCm39)	C344R	probably damaging	Het
Mier2	A	G	10: 79,384,664 (GRCm39)	V150A	probably damaging	Het
Mon2	A	T	10: 122,867,002 (GRCm39)	M551K	probably damaging	Het
Mrps15	A	G	4: 125,945,187 (GRCm39)	T125A	probably benign	Het
Mtmr14	A	G	6: 113,230,693 (GRCm39)	H99R	probably damaging	Het
Mup4	A	G	4: 59,960,598 (GRCm39)	M1T	probably null	Het
Mup5	G	A	4: 61,750,607 (GRCm39)	R179*	probably null	Het
Ncoa3	T	G	2: 165,911,221 (GRCm39)	V1326G	possibly damaging	Het
Noa1	A	T	5: 77,455,428 (GRCm39)	N429K	probably benign	Het
Nrxn1	C	T	17: 90,469,832 (GRCm39)	A241T	probably damaging	Het
Or1p1	A	T	11: 74,180,126 (GRCm39)	Y218F	probably damaging	Het
Or2t49	C	T	11: 58,392,765 (GRCm39)	V206M	probably damaging	Het
Pcdh9	G	A	14: 94,125,471 (GRCm39)	S233L	probably damaging	Het
Peg3	C	A	7: 6,712,900 (GRCm39)	S774I	possibly damaging	Het
Phyh	A	G	2: 4,942,620 (GRCm39)	K321R	probably null	Het
Plcg1	T	A	2: 160,573,840 (GRCm39)	M35K	probably damaging	Het
Pnisr	C	T	4: 21,874,086 (GRCm39)		probably benign	Het
Ppargc1b	T	A	18: 61,440,275 (GRCm39)		probably null	Het
Prcd	A	C	11: 116,548,371 (GRCm39)	S27R	probably benign	Het
Prx	T	A	7: 27,216,948 (GRCm39)	M622K	probably benign	Het
Psmd1	T	A	1: 85,999,567 (GRCm39)	D51E	probably damaging	Het
Psmd13	C	T	7: 140,463,430 (GRCm39)	T38I	probably damaging	Het
Ptprf	A	C	4: 118,082,096 (GRCm39)	D1047E	possibly damaging	Het
Rai14	C	A	15: 10,633,314 (GRCm39)	Q25H	probably damaging	Het
Riiad1	G	A	3: 94,380,176 (GRCm39)	P40S	possibly damaging	Het
Rnft1	T	A	11: 86,377,096 (GRCm39)	N53K	probably benign	Het
Scn4a	C	T	11: 106,211,646 (GRCm39)	R1457H	probably benign	Het
Sema6c	A	T	3: 95,078,099 (GRCm39)	I492F	probably damaging	Het
Shbg	T	C	11: 69,505,798 (GRCm39)	H403R	probably damaging	Het
Slc15a5	A	T	6: 138,049,845 (GRCm39)		probably benign	Het
Slc38a1	G	A	15: 96,485,016 (GRCm39)	T221M	probably damaging	Het
Slc6a16	T	A	7: 44,910,600 (GRCm39)	V375E	possibly damaging	Het
Slc6a17	T	A	3: 107,379,492 (GRCm39)	M559L	probably damaging	Het
Slmap	A	G	14: 26,181,373 (GRCm39)		probably benign	Het
Sorcs2	G	A	5: 36,184,092 (GRCm39)	R965W	probably damaging	Het
St8sia4	C	A	1: 95,581,394 (GRCm39)	R116L	probably damaging	Het
Tcaf1	A	C	6: 42,652,272 (GRCm39)	S737A	possibly damaging	Het
Thbs2	T	A	17: 14,899,072 (GRCm39)	Y676F	probably benign	Het
Tmod2	A	G	9: 75,493,324 (GRCm39)		probably benign	Het
Trim75	T	C	8: 65,435,391 (GRCm39)		probably null	Het
Ubr5	A	T	15: 38,042,090 (GRCm39)	S169T	probably benign	Het
Usp54	A	T	14: 20,633,508 (GRCm39)	Y37*	probably null	Het
Vill	T	C	9: 118,895,082 (GRCm39)	F100S	probably damaging	Het
Vstm5	A	G	9: 15,168,663 (GRCm39)	R76G	probably benign	Het
Zfp608	T	C	18: 55,032,321 (GRCm39)	T540A	probably benign	Het
Zfp947	A	C	17: 22,365,184 (GRCm39)	N163K	probably benign	Het
Zfyve26	T	C	12: 79,308,573 (GRCm39)	H228R	possibly damaging	Het

Other mutations in Atp2b1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00897:Atp2b1	APN	10	98,850,882 (GRCm39)	missense	possibly damaging	0.84
IGL00972:Atp2b1	APN	10	98,850,906 (GRCm39)	missense	probably damaging	1.00
IGL00977:Atp2b1	APN	10	98,822,837 (GRCm39)	missense	possibly damaging	0.88
IGL01154:Atp2b1	APN	10	98,832,750 (GRCm39)	missense	probably damaging	1.00
IGL03073:Atp2b1	APN	10	98,835,713 (GRCm39)	missense	probably damaging	1.00
IGL03081:Atp2b1	APN	10	98,830,675 (GRCm39)	splice site	probably benign
PIT4453001:Atp2b1	UTSW	10	98,852,840 (GRCm39)	missense	probably benign	0.00
R0157:Atp2b1	UTSW	10	98,835,809 (GRCm39)	missense	probably damaging	0.99
R0200:Atp2b1	UTSW	10	98,815,676 (GRCm39)	nonsense	probably null
R0899:Atp2b1	UTSW	10	98,852,893 (GRCm39)	critical splice donor site	probably null
R0981:Atp2b1	UTSW	10	98,851,491 (GRCm39)	missense	probably damaging	1.00
R1163:Atp2b1	UTSW	10	98,815,713 (GRCm39)	missense	possibly damaging	0.91
R1569:Atp2b1	UTSW	10	98,823,188 (GRCm39)	missense	probably benign	0.02
R1572:Atp2b1	UTSW	10	98,830,537 (GRCm39)	missense	probably benign	0.10
R1574:Atp2b1	UTSW	10	98,832,810 (GRCm39)	missense	probably damaging	1.00
R1574:Atp2b1	UTSW	10	98,832,810 (GRCm39)	missense	probably damaging	1.00
R1782:Atp2b1	UTSW	10	98,839,063 (GRCm39)	missense	probably benign	0.01
R1840:Atp2b1	UTSW	10	98,858,791 (GRCm39)	missense	probably benign	0.00
R1867:Atp2b1	UTSW	10	98,832,750 (GRCm39)	missense	probably damaging	1.00
R1868:Atp2b1	UTSW	10	98,832,750 (GRCm39)	missense	probably damaging	1.00
R1944:Atp2b1	UTSW	10	98,858,793 (GRCm39)	missense	probably damaging	0.97
R1984:Atp2b1	UTSW	10	98,850,354 (GRCm39)	missense	possibly damaging	0.95
R2055:Atp2b1	UTSW	10	98,850,421 (GRCm39)	missense	probably damaging	1.00
R2325:Atp2b1	UTSW	10	98,854,757 (GRCm39)	nonsense	probably null
R2399:Atp2b1	UTSW	10	98,835,785 (GRCm39)	missense	probably benign	0.02
R2876:Atp2b1	UTSW	10	98,835,607 (GRCm39)	missense	probably damaging	0.96
R3762:Atp2b1	UTSW	10	98,845,351 (GRCm39)	missense	probably damaging	1.00
R3776:Atp2b1	UTSW	10	98,815,731 (GRCm39)	frame shift	probably null
R3808:Atp2b1	UTSW	10	98,839,010 (GRCm39)	missense	possibly damaging	0.74
R3978:Atp2b1	UTSW	10	98,832,795 (GRCm39)	splice site	probably null
R4391:Atp2b1	UTSW	10	98,839,076 (GRCm39)	missense	probably benign	0.00
R4825:Atp2b1	UTSW	10	98,845,426 (GRCm39)	missense	probably damaging	1.00
R5755:Atp2b1	UTSW	10	98,830,671 (GRCm39)	critical splice donor site	probably null
R5755:Atp2b1	UTSW	10	98,839,032 (GRCm39)	missense	probably damaging	1.00
R6018:Atp2b1	UTSW	10	98,846,622 (GRCm39)	missense	probably damaging	1.00
R6179:Atp2b1	UTSW	10	98,858,691 (GRCm39)	missense	probably damaging	1.00
R6455:Atp2b1	UTSW	10	98,852,842 (GRCm39)	missense	possibly damaging	0.76
R6496:Atp2b1	UTSW	10	98,839,199 (GRCm39)	missense	probably damaging	0.98
R6786:Atp2b1	UTSW	10	98,852,821 (GRCm39)	missense	probably damaging	1.00
R6814:Atp2b1	UTSW	10	98,858,877 (GRCm39)	missense	possibly damaging	0.87
R7034:Atp2b1	UTSW	10	98,823,172 (GRCm39)	missense	probably damaging	1.00
R7036:Atp2b1	UTSW	10	98,823,172 (GRCm39)	missense	probably damaging	1.00
R7079:Atp2b1	UTSW	10	98,854,595 (GRCm39)	missense	probably benign	0.01
R7216:Atp2b1	UTSW	10	98,822,839 (GRCm39)	missense	probably benign	0.30
R7510:Atp2b1	UTSW	10	98,829,758 (GRCm39)	missense	probably benign	0.01
R7562:Atp2b1	UTSW	10	98,858,667 (GRCm39)	splice site	probably null
R7651:Atp2b1	UTSW	10	98,852,830 (GRCm39)	missense	probably damaging	0.99
R7739:Atp2b1	UTSW	10	98,837,227 (GRCm39)	missense	probably benign	0.01
R8005:Atp2b1	UTSW	10	98,830,661 (GRCm39)	missense	probably damaging	1.00
R8111:Atp2b1	UTSW	10	98,832,786 (GRCm39)	missense	possibly damaging	0.95
R8904:Atp2b1	UTSW	10	98,804,866 (GRCm39)	missense	possibly damaging	0.62
R9419:Atp2b1	UTSW	10	98,837,178 (GRCm39)	missense	possibly damaging	0.56
R9495:Atp2b1	UTSW	10	98,835,660 (GRCm39)	missense	probably damaging	0.99
R9506:Atp2b1	UTSW	10	98,858,862 (GRCm39)	missense	probably benign	0.01
R9682:Atp2b1	UTSW	10	98,815,662 (GRCm39)	missense	possibly damaging	0.90
Z1177:Atp2b1	UTSW	10	98,854,710 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TCAGTACACCCTGGAGAGAACAGC -3'
(R):5'- AGAAGTCCTGGAATCACTGCCTGC -3'

Sequencing Primer
(F):5'- AGTGCTATTACAGAGTTGCAGTG -3'
(R):5'- CTTTCCAGGCCAGAAAAGGATG -3'

Posted On

2014-05-14