Mutagenetix > Incidental Mutation

Incidental Mutation 'R1760:Cdh5'

192703

Institutional Source

Beutler Lab

Gene Symbol

Cdh5

Ensembl Gene

ENSMUSG00000031871

Gene Name

cadherin 5

Synonyms

VECD, CD144, VEcad, VEC, VE-cadherin, 7B4/cadherin-5, VE-Cad

MMRRC Submission

039792-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1760 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

104828257-104871143 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 104854801 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 243 (M243K)

Ref Sequence

ENSEMBL: ENSMUSP00000034339 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034339]

AlphaFold

P55284

PDB Structure

NMR structure of mouse Par3-PDZ3 in complex with VE-Cadherin C-terminus [SOLUTION NMR]

Predicted Effect

probably benign
Transcript: ENSMUST00000034339
AA Change: M243K

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000034339
Gene: ENSMUSG00000031871
AA Change: M243K

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
CA	66	147	3.03e-10	SMART
CA	171	254	3.19e-18	SMART
CA	278	370	7.92e-14	SMART
CA	392	476	1.09e-16	SMART
CA	499	583	2.16e-6	SMART
transmembrane domain	598	620	N/A	INTRINSIC
Pfam:Cadherin_C	625	776	1.1e-43	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.3%
20x: 92.6%

Validation Efficiency

97% (95/98)

MGI Phenotype

FUNCTION: This gene encodes a member of the cadherin family of calcium-dependent glycoproteins that mediate cell adhesion and regulate many morphogenetic events during development. The encoded preproprotein is further processed to generate a mature protein. Mice lacking the encoded protein die in utero due to vascular insufficiency, caused by increased endothelial apoptosis. Multiple distinct genes of the cadherin family, including this gene, are found on chromosome 8. [provided by RefSeq, Oct 2015]
PHENOTYPE: Homozygous inactivation or cytosolic truncation of this gene causes embryonic growth retardation, abnormal somite and heart development, impaired remodeling and maturation of endothelial cells, increased endothelial apoptosis and severe vascular defects leading to embryonic death at midgestation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 92 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca2	T	C	2: 25,333,055 (GRCm39)	S1585P	probably benign	Het
Abhd16b	T	C	2: 181,135,197 (GRCm39)	F33S	probably damaging	Het
Adgra2	G	A	8: 27,609,795 (GRCm39)	R856Q	probably damaging	Het
Aff3	A	T	1: 38,368,945 (GRCm39)		probably benign	Het
Anxa2	A	T	9: 69,397,049 (GRCm39)	Y251F	probably benign	Het
Arid1b	A	G	17: 5,392,088 (GRCm39)	T1873A	probably damaging	Het
Baz1b	C	A	5: 135,271,378 (GRCm39)	D1320E	probably benign	Het
Bbs1	A	T	19: 4,944,350 (GRCm39)	S426R	probably benign	Het
Bid	A	G	6: 120,877,209 (GRCm39)	V44A	possibly damaging	Het
Ccdc60	T	A	5: 116,310,532 (GRCm39)	M177L	probably damaging	Het
Cdh23	G	A	10: 60,161,855 (GRCm39)	T1997M	probably damaging	Het
Clpb	T	A	7: 101,435,905 (GRCm39)	V578E	possibly damaging	Het
Cngb1	C	A	8: 96,026,328 (GRCm39)	C151F	probably benign	Het
Cntnap5b	T	C	1: 99,700,535 (GRCm39)	S16P	probably benign	Het
Cr1l	T	A	1: 194,797,123 (GRCm39)	M305L	probably benign	Het
Ctnnal1	A	T	4: 56,838,988 (GRCm39)	M235K	probably damaging	Het
Ddx55	A	T	5: 124,706,176 (GRCm39)	R534W	probably damaging	Het
Dip2b	T	A	15: 100,109,910 (GRCm39)	L1465Q	probably damaging	Het
Dnah9	G	T	11: 65,872,048 (GRCm39)	D2727E	probably benign	Het
Dph3b-ps	A	C	13: 106,683,497 (GRCm39)		noncoding transcript	Het
Dst	T	A	1: 34,267,684 (GRCm39)	L2702Q	probably damaging	Het
Efnb2	T	C	8: 8,673,184 (GRCm39)	T158A	possibly damaging	Het
Exosc10	A	T	4: 148,662,926 (GRCm39)	K712*	probably null	Het
Fgr	T	C	4: 132,725,653 (GRCm39)	V354A	possibly damaging	Het
Fsip2	A	G	2: 82,830,185 (GRCm39)	D6893G	possibly damaging	Het
Fsip2	G	A	2: 82,815,240 (GRCm39)	V3658M	probably benign	Het
Fsip2	A	T	2: 82,818,055 (GRCm39)	H4596L	possibly damaging	Het
Gm1527	G	A	3: 28,949,699 (GRCm39)		probably benign	Het
Gm5150	G	T	3: 16,060,468 (GRCm39)	Q7K	probably benign	Het
Gpr155	C	T	2: 73,212,279 (GRCm39)	V115M	probably damaging	Het
Gpr75	T	C	11: 30,841,527 (GRCm39)	L144P	probably damaging	Het
Gsn	T	A	2: 35,174,835 (GRCm39)	Y127N	probably damaging	Het
Hk1	A	G	10: 62,117,678 (GRCm39)	L615S	probably damaging	Het
Igsf9b	A	G	9: 27,229,123 (GRCm39)	T194A	possibly damaging	Het
Il17rd	C	T	14: 26,813,763 (GRCm39)	Q46*	probably null	Het
Jak1	T	A	4: 101,020,126 (GRCm39)	M678L	probably benign	Het
Kif6	T	C	17: 49,922,311 (GRCm39)	V16A	probably benign	Het
Kpna3	T	C	14: 61,607,990 (GRCm39)	E405G	probably benign	Het
Lmtk2	C	A	5: 144,110,993 (GRCm39)	T571K	probably damaging	Het
Mucl2	T	C	15: 103,927,838 (GRCm39)	T40A	possibly damaging	Het
Myh11	G	A	16: 14,051,559 (GRCm39)		probably benign	Het
Myh7	C	T	14: 55,210,170 (GRCm39)	R1845Q	probably damaging	Het
Myo1f	T	A	17: 33,805,172 (GRCm39)	L480Q	probably benign	Het
Nek9	T	G	12: 85,352,364 (GRCm39)	D833A	possibly damaging	Het
Nek9	T	C	12: 85,357,184 (GRCm39)	E660G	probably benign	Het
Or10z1	C	T	1: 174,077,926 (GRCm39)	C189Y	probably damaging	Het
Or2a12	A	G	6: 42,904,431 (GRCm39)	I89V	possibly damaging	Het
Or2t45	A	G	11: 58,669,195 (GRCm39)	M81V	possibly damaging	Het
Or5h18	T	C	16: 58,847,350 (GRCm39)	R307G	probably benign	Het
Or6c65	T	A	10: 129,603,417 (GRCm39)	D17E	probably benign	Het
Or6f2	G	A	7: 139,756,188 (GRCm39)	V52M	probably damaging	Het
Or7s1a-ps1	T	A	9: 18,843,791 (GRCm39)		probably benign	Het
Otud3	G	T	4: 138,623,092 (GRCm39)	T383K	possibly damaging	Het
Pkp4	T	C	2: 59,142,185 (GRCm39)	L496P	probably damaging	Het
Pla2g4e	C	A	2: 120,000,527 (GRCm39)	A737S	possibly damaging	Het
Pla2g4f	T	C	2: 120,144,547 (GRCm39)		probably benign	Het
Plxnd1	A	T	6: 115,944,740 (GRCm39)	V1018E	possibly damaging	Het
Ppp1r21	T	G	17: 88,869,653 (GRCm39)	V402G	possibly damaging	Het
Prkcq	T	G	2: 11,304,881 (GRCm39)	M690R	probably damaging	Het
Ptpra	T	C	2: 130,391,747 (GRCm39)	I719T	probably damaging	Het
Rab3ip	C	T	10: 116,773,415 (GRCm39)	D133N	probably damaging	Het
Relch	T	G	1: 105,647,169 (GRCm39)		probably benign	Het
Rsbn1	T	A	3: 103,867,347 (GRCm39)	Y563N	probably damaging	Het
Rtf1	A	C	2: 119,558,889 (GRCm39)	D530A	probably benign	Het
Rybp	G	T	6: 100,209,224 (GRCm39)	S199R	probably benign	Het
Sema5a	T	G	15: 32,641,252 (GRCm39)	C689G	probably damaging	Het
Senp6	T	A	9: 80,025,911 (GRCm39)	V314E	probably benign	Het
Setd1a	T	A	7: 127,385,062 (GRCm39)	C47S	possibly damaging	Het
Slamf1	C	A	1: 171,604,734 (GRCm39)	T168K	probably benign	Het
Slc12a5	T	C	2: 164,838,048 (GRCm39)	S937P	probably damaging	Het
Slc38a11	C	T	2: 65,185,663 (GRCm39)		probably null	Het
Slc6a2	C	T	8: 93,687,846 (GRCm39)		probably benign	Het
Snw1	A	T	12: 87,511,459 (GRCm39)	F64Y	probably benign	Het
Spata9	A	C	13: 76,146,643 (GRCm39)	I172L	probably benign	Het
Sphkap	T	C	1: 83,255,265 (GRCm39)	H828R	probably benign	Het
Spmip6	T	A	4: 41,507,330 (GRCm39)		probably null	Het
Tmem94	A	T	11: 115,687,580 (GRCm39)	K1146N	probably damaging	Het
Trdn	A	G	10: 33,109,883 (GRCm39)	T294A	possibly damaging	Het
Tsc22d1	T	C	14: 76,654,388 (GRCm39)	V289A	possibly damaging	Het
Tti1	C	A	2: 157,834,955 (GRCm39)	V1002L	possibly damaging	Het
Tubgcp4	T	A	2: 121,019,952 (GRCm39)		probably null	Het
Ush2a	G	A	1: 188,643,180 (GRCm39)	E4181K	possibly damaging	Het
Uvrag	A	G	7: 98,537,555 (GRCm39)	S547P	probably benign	Het
Vav3	T	C	3: 109,248,443 (GRCm39)	V30A	possibly damaging	Het
Vegfa	A	G	17: 46,336,395 (GRCm39)	Y242H	probably damaging	Het
Vmn2r75	G	T	7: 85,798,019 (GRCm39)	T598K	probably damaging	Het
Vps13b	C	T	15: 35,884,765 (GRCm39)	S3146L	possibly damaging	Het
Vrk3	A	G	7: 44,417,895 (GRCm39)	Y310C	probably damaging	Het
Zfhx4	A	G	3: 5,447,676 (GRCm39)	K1100R	probably benign	Het
Zfp748	T	A	13: 67,693,540 (GRCm39)		probably null	Het
Zfp760	A	T	17: 21,941,311 (GRCm39)	D162V	probably damaging	Het
Znfx1	T	A	2: 166,881,786 (GRCm39)	M1068L	probably damaging	Het

Other mutations in Cdh5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01459:Cdh5	APN	8	104,864,449 (GRCm39)	missense	probably damaging	1.00
IGL02506:Cdh5	APN	8	104,864,454 (GRCm39)	missense	probably damaging	1.00
IGL02737:Cdh5	APN	8	104,869,560 (GRCm39)	missense	probably damaging	1.00
IGL03287:Cdh5	APN	8	104,854,747 (GRCm39)	missense	probably damaging	1.00
IGL03297:Cdh5	APN	8	104,854,831 (GRCm39)	missense	probably damaging	1.00
R0015:Cdh5	UTSW	8	104,867,559 (GRCm39)	missense	probably benign
R0015:Cdh5	UTSW	8	104,867,559 (GRCm39)	missense	probably benign
R0126:Cdh5	UTSW	8	104,867,314 (GRCm39)	critical splice acceptor site	probably null
R0167:Cdh5	UTSW	8	104,863,367 (GRCm39)	missense	possibly damaging	0.51
R0592:Cdh5	UTSW	8	104,857,534 (GRCm39)	splice site	probably null
R1826:Cdh5	UTSW	8	104,857,723 (GRCm39)	missense	possibly damaging	0.93
R1827:Cdh5	UTSW	8	104,839,541 (GRCm39)	missense	possibly damaging	0.96
R1840:Cdh5	UTSW	8	104,853,248 (GRCm39)	nonsense	probably null
R1993:Cdh5	UTSW	8	104,864,447 (GRCm39)	missense	probably damaging	0.97
R2219:Cdh5	UTSW	8	104,869,538 (GRCm39)	missense	possibly damaging	0.94
R2239:Cdh5	UTSW	8	104,852,304 (GRCm39)	missense	possibly damaging	0.54
R2281:Cdh5	UTSW	8	104,852,365 (GRCm39)	missense	probably damaging	1.00
R2380:Cdh5	UTSW	8	104,852,304 (GRCm39)	missense	possibly damaging	0.54
R3418:Cdh5	UTSW	8	104,856,002 (GRCm39)	missense	probably damaging	0.98
R3419:Cdh5	UTSW	8	104,856,002 (GRCm39)	missense	probably damaging	0.98
R3429:Cdh5	UTSW	8	104,857,600 (GRCm39)	missense	possibly damaging	0.91
R4491:Cdh5	UTSW	8	104,839,672 (GRCm39)	missense	probably damaging	1.00
R4823:Cdh5	UTSW	8	104,869,301 (GRCm39)	missense	probably benign	0.00
R5071:Cdh5	UTSW	8	104,867,334 (GRCm39)	missense	probably damaging	0.99
R5265:Cdh5	UTSW	8	104,869,371 (GRCm39)	missense	probably benign	0.00
R5383:Cdh5	UTSW	8	104,864,479 (GRCm39)	missense	probably benign	0.17
R5447:Cdh5	UTSW	8	104,855,994 (GRCm39)	missense	probably damaging	0.99
R5580:Cdh5	UTSW	8	104,852,126 (GRCm39)	nonsense	probably null
R5876:Cdh5	UTSW	8	104,869,209 (GRCm39)	missense	probably damaging	1.00
R5934:Cdh5	UTSW	8	104,864,900 (GRCm39)	missense	probably benign	0.00
R6378:Cdh5	UTSW	8	104,853,168 (GRCm39)	splice site	probably null
R7110:Cdh5	UTSW	8	104,867,400 (GRCm39)	missense	probably damaging	1.00
R7141:Cdh5	UTSW	8	104,839,633 (GRCm39)	missense	probably benign	0.20
R7324:Cdh5	UTSW	8	104,869,425 (GRCm39)	missense	probably damaging	1.00
R7658:Cdh5	UTSW	8	104,856,033 (GRCm39)	critical splice donor site	probably null
R7806:Cdh5	UTSW	8	104,867,448 (GRCm39)	missense	probably damaging	0.98
R7811:Cdh5	UTSW	8	104,852,235 (GRCm39)	missense	possibly damaging	0.72
R7958:Cdh5	UTSW	8	104,839,649 (GRCm39)	missense	probably benign	0.01
R8270:Cdh5	UTSW	8	104,839,672 (GRCm39)	missense	probably benign	0.11
R8424:Cdh5	UTSW	8	104,856,003 (GRCm39)	missense	probably benign	0.00
R8432:Cdh5	UTSW	8	104,839,698 (GRCm39)	missense	probably damaging	1.00
R8888:Cdh5	UTSW	8	104,852,092 (GRCm39)	missense	possibly damaging	0.95
R9190:Cdh5	UTSW	8	104,867,337 (GRCm39)	missense	probably damaging	1.00
R9738:Cdh5	UTSW	8	104,863,329 (GRCm39)	missense	probably damaging	0.99
X0067:Cdh5	UTSW	8	104,869,169 (GRCm39)	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- TTTTAGCCATACAGGGCAAGGGATG -3'
(R):5'- GGCACAGGAAAAGCTCTTGACAGAC -3'

Sequencing Primer
(F):5'- CTGAGCATTCAGATTTTCTCAAGGC -3'
(R):5'- ATACCAGATTGTGGTTGTACCC -3'

Posted On

2014-05-23