Mutagenetix > Incidental Mutation

Incidental Mutation 'R0035:Zc3h12c'

19420

Institutional Source

Beutler Lab

Gene Symbol

Zc3h12c

Ensembl Gene

ENSMUSG00000035164

Gene Name

zinc finger CCCH type containing 12C

Synonyms

C230027N18Rik

MMRRC Submission

038329-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0035 (G1)

Quality Score

225

Status

Validated (trace)

Chromosome

Chromosomal Location

52022644-52079872 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 52055047 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 235 (M235K)

Ref Sequence

ENSEMBL: ENSMUSP00000150821 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000165519] [ENSMUST00000213645]

AlphaFold

Q5DTV4

Predicted Effect

probably benign
Transcript: ENSMUST00000165519
AA Change: M254K

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000127603
Gene: ENSMUSG00000035164
AA Change: M254K

Domain	Start	End	E-Value	Type
low complexity region	2	15	N/A	INTRINSIC
low complexity region	53	65	N/A	INTRINSIC
low complexity region	106	121	N/A	INTRINSIC
Pfam:RNase_Zc3h12a	264	420	1.6e-67	PFAM
low complexity region	644	659	N/A	INTRINSIC
low complexity region	746	758	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000213645
AA Change: M235K

PolyPhen 2 Score 0.039 (Sensitivity: 0.94; Specificity: 0.83)

Meta Mutation Damage Score

0.0604

Coding Region Coverage

1x: 99.1%
3x: 97.8%
10x: 94.7%
20x: 87.1%

Validation Efficiency

99% (70/71)

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3110040N11Rik	T	C	7: 81,438,297 (GRCm39)	T20A	probably benign	Het
Aadacl4	A	G	4: 144,344,511 (GRCm39)	T96A	probably damaging	Het
Abcb6	A	G	1: 75,151,651 (GRCm39)	V473A	possibly damaging	Het
Abo	C	A	2: 26,733,385 (GRCm39)	K273N	possibly damaging	Het
Acvr1c	A	G	2: 58,205,791 (GRCm39)		probably benign	Het
Adcy8	A	T	15: 64,571,217 (GRCm39)	V1142D	probably benign	Het
Akna	T	A	4: 63,300,682 (GRCm39)	H591L	probably benign	Het
Aox1	T	C	1: 58,393,581 (GRCm39)	V1247A	probably benign	Het
Ap4b1	T	C	3: 103,727,980 (GRCm39)		probably benign	Het
Armh3	A	T	19: 45,879,679 (GRCm39)	M558K	probably damaging	Het
Atm	A	G	9: 53,424,480 (GRCm39)	V607A	probably benign	Het
Bltp1	T	A	3: 37,041,747 (GRCm39)	Y2708*	probably null	Het
Cass4	C	T	2: 172,258,412 (GRCm39)	P137S	probably damaging	Het
Cfap53	A	G	18: 74,433,278 (GRCm39)	E121G	probably damaging	Het
Chmp6	T	C	11: 119,807,508 (GRCm39)	V31A	probably damaging	Het
Clec4a3	T	A	6: 122,944,508 (GRCm39)	Y185N	probably damaging	Het
Clic5	A	G	17: 44,586,200 (GRCm39)	T230A	probably damaging	Het
Clspn	G	T	4: 126,458,796 (GRCm39)		probably null	Het
Cntn1	T	A	15: 92,129,969 (GRCm39)		probably benign	Het
Col4a3	G	A	1: 82,650,474 (GRCm39)	G577R	unknown	Het
Defa21	T	A	8: 21,515,784 (GRCm39)		probably null	Het
Deup1	T	C	9: 15,511,117 (GRCm39)	R221G	possibly damaging	Het
Dnah8	A	T	17: 30,902,595 (GRCm39)		probably benign	Het
Dnase1l2	A	G	17: 24,660,049 (GRCm39)	V273A	probably damaging	Het
Gm5134	T	A	10: 75,829,698 (GRCm39)	F328Y	probably benign	Het
Golph3	A	T	15: 12,339,776 (GRCm39)	E96D	probably damaging	Het
Hspd1	A	G	1: 55,122,942 (GRCm39)	V151A	probably benign	Het
Htr1f	A	C	16: 64,746,860 (GRCm39)	I144S	probably damaging	Het
Il23r	A	G	6: 67,450,772 (GRCm39)		probably benign	Het
Il25	A	G	14: 55,170,553 (GRCm39)	E42G	probably damaging	Het
Il36b	A	T	2: 24,049,890 (GRCm39)	H167L	probably benign	Het
Klrb1-ps1	C	T	6: 129,106,306 (GRCm39)	A149V	possibly damaging	Het
Kmt2e	T	A	5: 23,690,619 (GRCm39)		probably benign	Het
Ktn1	A	G	14: 47,967,836 (GRCm39)	N1167D	probably benign	Het
Lama4	T	A	10: 38,948,734 (GRCm39)	D832E	probably benign	Het
Map1b	A	G	13: 99,571,846 (GRCm39)	S292P	probably damaging	Het
Map6	C	T	7: 98,966,815 (GRCm39)	T345I	probably damaging	Het
Mark2	A	T	19: 7,262,017 (GRCm39)		probably benign	Het
Me3	C	A	7: 89,500,967 (GRCm39)	H559Q	probably benign	Het
Myo1b	A	G	1: 51,817,541 (GRCm39)	F574L	probably damaging	Het
Nos2	T	C	11: 78,836,553 (GRCm39)	S431P	probably damaging	Het
Nr1h5	T	A	3: 102,856,889 (GRCm39)	K208*	probably null	Het
Nup214	T	C	2: 31,880,379 (GRCm39)		probably null	Het
Obp2b	T	C	2: 25,628,645 (GRCm39)	L133P	probably damaging	Het
Or14a259	T	C	7: 86,013,395 (GRCm39)	D50G	possibly damaging	Het
Or5k1	A	T	16: 58,617,485 (GRCm39)	C241*	probably null	Het
Osbp2	C	T	11: 3,667,997 (GRCm39)		probably benign	Het
Ptafr	C	A	4: 132,306,864 (GRCm39)	L85I	probably benign	Het
Ptprk	T	A	10: 28,139,504 (GRCm39)	Y76*	probably null	Het
Rad50	A	G	11: 53,545,854 (GRCm39)		probably benign	Het
Rasef	G	T	4: 73,681,091 (GRCm39)		probably benign	Het
Slitrk6	A	T	14: 110,987,364 (GRCm39)	L781H	probably damaging	Het
Tbc1d1	T	A	5: 64,414,080 (GRCm39)	I18N	probably damaging	Het
Tbc1d17	T	C	7: 44,490,832 (GRCm39)	N587D	probably benign	Het
Trank1	A	T	9: 111,195,844 (GRCm39)	K1289N	probably benign	Het
Tspyl3	A	G	2: 153,066,240 (GRCm39)	S333P	probably damaging	Het
Ush2a	G	A	1: 188,089,085 (GRCm39)	V347I	probably benign	Het
Usp17le	G	T	7: 104,418,269 (GRCm39)	S291*	probably null	Het
Usp24	T	A	4: 106,225,224 (GRCm39)	S619T	probably benign	Het
Vmn2r10	T	C	5: 109,145,467 (GRCm39)		probably benign	Het
Vmn2r78	A	G	7: 86,569,413 (GRCm39)	E102G	probably benign	Het
Vwa3b	G	A	1: 37,204,770 (GRCm39)	V85I	possibly damaging	Het
Wwp1	A	C	4: 19,631,116 (GRCm39)	I639R	probably damaging	Het
Xpo5	A	G	17: 46,551,101 (GRCm39)	T1001A	probably benign	Het
Zfp619	G	A	7: 39,186,706 (GRCm39)	G912D	probably damaging	Het

Other mutations in Zc3h12c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00418:Zc3h12c	APN	9	52,027,965 (GRCm39)	missense	probably damaging	1.00
IGL01288:Zc3h12c	APN	9	52,028,951 (GRCm39)	splice site	probably benign
IGL01993:Zc3h12c	APN	9	52,027,611 (GRCm39)	missense	probably damaging	1.00
R0035:Zc3h12c	UTSW	9	52,055,047 (GRCm39)	missense	probably benign	0.04
R0131:Zc3h12c	UTSW	9	52,037,923 (GRCm39)	missense	possibly damaging	0.87
R0240:Zc3h12c	UTSW	9	52,055,383 (GRCm39)	missense	possibly damaging	0.77
R0240:Zc3h12c	UTSW	9	52,055,383 (GRCm39)	missense	possibly damaging	0.77
R1762:Zc3h12c	UTSW	9	52,027,081 (GRCm39)	missense	probably benign	0.17
R2101:Zc3h12c	UTSW	9	52,027,721 (GRCm39)	missense	probably benign	0.01
R3052:Zc3h12c	UTSW	9	52,055,356 (GRCm39)	missense	possibly damaging	0.94
R3689:Zc3h12c	UTSW	9	52,027,256 (GRCm39)	missense	probably benign	0.00
R4163:Zc3h12c	UTSW	9	52,026,999 (GRCm39)	missense	probably damaging	1.00
R4230:Zc3h12c	UTSW	9	52,055,728 (GRCm39)	critical splice acceptor site	probably null
R4803:Zc3h12c	UTSW	9	52,027,853 (GRCm39)	missense	probably damaging	1.00
R5008:Zc3h12c	UTSW	9	52,028,000 (GRCm39)	missense	probably benign	0.00
R5153:Zc3h12c	UTSW	9	52,037,947 (GRCm39)	missense	probably damaging	1.00
R5682:Zc3h12c	UTSW	9	52,037,876 (GRCm39)	missense	probably damaging	1.00
R5843:Zc3h12c	UTSW	9	52,027,982 (GRCm39)	missense	probably benign	0.01
R6613:Zc3h12c	UTSW	9	52,027,412 (GRCm39)	missense	possibly damaging	0.65
R7097:Zc3h12c	UTSW	9	52,027,226 (GRCm39)	missense	possibly damaging	0.77
R7460:Zc3h12c	UTSW	9	52,055,402 (GRCm39)	missense	probably benign	0.13
R7867:Zc3h12c	UTSW	9	52,055,248 (GRCm39)	missense	probably damaging	0.96
R8711:Zc3h12c	UTSW	9	52,037,858 (GRCm39)	splice site	probably benign
R9170:Zc3h12c	UTSW	9	52,027,419 (GRCm39)	missense	probably benign	0.00
R9345:Zc3h12c	UTSW	9	52,028,010 (GRCm39)	missense	probably benign	0.02
R9748:Zc3h12c	UTSW	9	52,055,231 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACCAGACCCTGAGTGTGATACTGAG -3'
(R):5'- CAGGTCCAGCTTGTGCTAAACAAAC -3'

Sequencing Primer
(F):5'- AGCCATCACGATTTAGTCAGAG -3'
(R):5'- AGTGAAGCCGATCAAACAGT -3'

Posted On

2013-04-11