Mutagenetix > Incidental Mutation

Incidental Mutation 'R1767:Slco6d1'

194435

Institutional Source

Beutler Lab

Gene Symbol

Slco6d1

Ensembl Gene

ENSMUSG00000026336

Gene Name

solute carrier organic anion transporter family, member 6d1

Synonyms

4921511I05Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.052) question?

Stock #

R1767 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

98348849-98444716 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 98418274 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 487 (T487A)

Ref Sequence

ENSEMBL: ENSMUSP00000027575 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027575] [ENSMUST00000160796] [ENSMUST00000162468]

AlphaFold

Q9D5W6

Predicted Effect

possibly damaging
Transcript: ENSMUST00000027575
AA Change: T487A

PolyPhen 2 Score 0.899 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000027575
Gene: ENSMUSG00000026336
AA Change: T487A

Domain	Start	End	E-Value	Type
Pfam:MFS_1	86	463	1.8e-13	PFAM
KAZAL	483	527	2.3e0	SMART
low complexity region	558	572	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000160796
AA Change: T487A

PolyPhen 2 Score 0.795 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000123850
Gene: ENSMUSG00000026336
AA Change: T487A

Domain	Start	End	E-Value	Type
Pfam:MFS_1	86	463	2.4e-13	PFAM
KAZAL	483	527	2.3e0	SMART
low complexity region	558	572	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000162468

SMART Domains

Protein: ENSMUSP00000125258
Gene: ENSMUSG00000026336

Domain	Start	End	E-Value	Type
Pfam:OATP	64	313	2.1e-27	PFAM

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.4%
20x: 92.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 80 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110065P20Rik	T	C	4: 124,743,754 (GRCm39)	N128S	possibly damaging	Het
Adam26b	T	A	8: 43,972,948 (GRCm39)	I685F	probably benign	Het
Adgrf5	A	T	17: 43,761,455 (GRCm39)	Y1050F	possibly damaging	Het
Alcam	A	T	16: 52,091,077 (GRCm39)	N480K	probably damaging	Het
Alk	T	A	17: 72,207,693 (GRCm39)	H1014L	possibly damaging	Het
Arhgef2	A	G	3: 88,551,260 (GRCm39)	Q778R	probably damaging	Het
Arhgef6	T	C	X: 56,383,922 (GRCm39)	M5V	probably benign	Het
Ascc3	T	A	10: 50,594,472 (GRCm39)	I1189N	probably damaging	Het
AU040320	G	A	4: 126,734,517 (GRCm39)	G713D	probably damaging	Het
Bmpr1a	A	G	14: 34,169,727 (GRCm39)		probably null	Het
Bpifa6	A	G	2: 153,829,147 (GRCm39)	T225A	possibly damaging	Het
Cacna1g	T	C	11: 94,350,628 (GRCm39)	S406G	probably benign	Het
Ccdc198	G	A	14: 49,473,341 (GRCm39)	T128I	probably benign	Het
Ccdc40	T	A	11: 119,121,522 (GRCm39)		probably null	Het
Cckbr	A	T	7: 105,083,758 (GRCm39)	I229F	possibly damaging	Het
Cers3	A	G	7: 66,433,151 (GRCm39)	K156R	probably damaging	Het
Chd1	T	A	17: 15,990,565 (GRCm39)	W1706R	probably damaging	Het
Col11a2	T	A	17: 34,282,869 (GRCm39)		probably benign	Het
Coq10b	A	G	1: 55,100,513 (GRCm39)	R66G	probably damaging	Het
Cpn2	A	T	16: 30,078,485 (GRCm39)	Y405*	probably null	Het
Dis3	A	T	14: 99,321,578 (GRCm39)	Y590N	probably damaging	Het
Dpy19l1	T	C	9: 24,373,880 (GRCm39)	H270R	probably benign	Het
Dync1h1	G	A	12: 110,602,943 (GRCm39)	E2195K	probably benign	Het
Ephx1	C	T	1: 180,822,242 (GRCm39)	G101S	probably damaging	Het
Flg	A	T	3: 93,187,220 (GRCm39)	Y224F	possibly damaging	Het
Focad	G	T	4: 88,275,705 (GRCm39)	V1105L	unknown	Het
Fzd1	A	G	5: 4,806,812 (GRCm39)	Y257H	probably benign	Het
Gm11116	T	C	5: 88,259,311 (GRCm39)		probably benign	Het
Gm11938	G	A	11: 99,494,071 (GRCm39)	S8F	unknown	Het
Grin3a	A	T	4: 49,844,423 (GRCm39)	V220E	probably damaging	Het
Gstt2	T	C	10: 75,670,098 (GRCm39)	D8G	probably damaging	Het
Gtf3c3	C	T	1: 54,456,937 (GRCm39)	A488T	probably damaging	Het
Hook3	A	G	8: 26,561,084 (GRCm39)		probably null	Het
Itpr2	T	C	6: 146,251,566 (GRCm39)	D993G	possibly damaging	Het
Jhy	T	C	9: 40,872,444 (GRCm39)	R22G	probably benign	Het
Krt13	A	C	11: 100,011,926 (GRCm39)	H132Q	possibly damaging	Het
Krtap27-1	G	A	16: 88,468,199 (GRCm39)	S115L	probably damaging	Het
L1td1	T	C	4: 98,625,686 (GRCm39)	V627A	probably benign	Het
Lrrn4cl	A	G	19: 8,829,135 (GRCm39)	T38A	probably benign	Het
Ly96	A	G	1: 16,776,399 (GRCm39)	T112A	probably benign	Het
Meltf	G	T	16: 31,702,747 (GRCm39)	C158F	probably damaging	Het
Mycbp2	A	T	14: 103,485,841 (GRCm39)	H1040Q	probably damaging	Het
Npas4	G	A	19: 5,038,211 (GRCm39)	P199L	probably benign	Het
Or12j3	T	C	7: 139,953,389 (GRCm39)	I45V	possibly damaging	Het
Or52r1	T	A	7: 102,536,833 (GRCm39)	I176F	probably damaging	Het
Or8k3b	A	G	2: 86,520,728 (GRCm39)	M197T	probably benign	Het
Pcdh10	A	T	3: 45,338,612 (GRCm39)	H923L	probably damaging	Het
Pias3	T	C	3: 96,608,719 (GRCm39)	S228P	probably damaging	Het
Pign	A	G	1: 105,580,917 (GRCm39)	V154A	probably benign	Het
Plod3	T	A	5: 137,019,030 (GRCm39)	V305E	possibly damaging	Het
Prkra	G	T	2: 76,477,584 (GRCm39)	H40Q	possibly damaging	Het
Prss22	T	A	17: 24,215,331 (GRCm39)	E148D	probably benign	Het
Psg17	A	G	7: 18,550,727 (GRCm39)	V376A	possibly damaging	Het
Retnlg	A	T	16: 48,693,991 (GRCm39)	D49V	possibly damaging	Het
Rnf26rt	A	T	6: 76,474,588 (GRCm39)	N9K	unknown	Het
Rtp1	A	G	16: 23,250,124 (GRCm39)	E163G	probably damaging	Het
Slc6a20a	T	A	9: 123,466,165 (GRCm39)	I522F	probably damaging	Het
Slco5a1	T	C	1: 13,059,839 (GRCm39)	D294G	probably damaging	Het
Smarcc2	A	T	10: 128,304,951 (GRCm39)	D262V	possibly damaging	Het
Sned1	G	A	1: 93,209,376 (GRCm39)	V830M	possibly damaging	Het
Ssbp3	G	T	4: 106,904,612 (GRCm39)	D336Y	probably damaging	Het
Sun2	A	G	15: 79,609,758 (GRCm39)	S694P	probably benign	Het
Tdp1	G	A	12: 99,857,602 (GRCm39)		probably null	Het
Tfap2a	A	T	13: 40,878,613 (GRCm39)	I204N	probably damaging	Het
Tfip11	T	A	5: 112,482,298 (GRCm39)	W519R	probably damaging	Het
Tie1	T	C	4: 118,333,373 (GRCm39)	E831G	possibly damaging	Het
Tjp1	A	G	7: 64,962,301 (GRCm39)		probably null	Het
Tln2	C	T	9: 67,193,796 (GRCm39)	A1773T	probably benign	Het
Tmem39b	A	C	4: 129,586,976 (GRCm39)	I78M	possibly damaging	Het
Trank1	T	C	9: 111,220,547 (GRCm39)	V2428A	probably benign	Het
Trim35	A	G	14: 66,541,617 (GRCm39)	E247G	probably damaging	Het
Tsc22d1	T	C	14: 76,655,542 (GRCm39)	S674P	probably damaging	Het
Tsn	A	T	1: 118,228,618 (GRCm39)	D201E	probably damaging	Het
Usp42	A	T	5: 143,700,621 (GRCm39)	V1134E	possibly damaging	Het
Uvrag	A	G	7: 98,748,601 (GRCm39)	I117T	probably damaging	Het
Vmn1r192	A	G	13: 22,371,441 (GRCm39)	S260P	probably benign	Het
Vmn2r110	C	T	17: 20,800,840 (GRCm39)	A531T	possibly damaging	Het
Wdsub1	A	T	2: 59,689,058 (GRCm39)	I388N	probably damaging	Het
Wnt10b	A	T	15: 98,670,556 (GRCm39)	L228Q	probably damaging	Het
Zbtb34	A	C	2: 33,301,348 (GRCm39)	S398A	possibly damaging	Het

Other mutations in Slco6d1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00420:Slco6d1	APN	1	98,359,955 (GRCm39)	splice site	probably null
IGL00678:Slco6d1	APN	1	98,424,069 (GRCm39)	missense	probably benign	0.01
IGL00790:Slco6d1	APN	1	98,348,925 (GRCm39)	utr 5 prime	probably benign
IGL01694:Slco6d1	APN	1	98,427,570 (GRCm39)	missense	probably damaging	1.00
IGL02003:Slco6d1	APN	1	98,408,493 (GRCm39)	missense	probably damaging	1.00
IGL02059:Slco6d1	APN	1	98,374,531 (GRCm39)	missense	possibly damaging	0.95
IGL02085:Slco6d1	APN	1	98,371,468 (GRCm39)	missense	probably damaging	1.00
IGL02683:Slco6d1	APN	1	98,408,397 (GRCm39)	missense	probably benign	0.05
IGL02736:Slco6d1	APN	1	98,356,036 (GRCm39)	missense	possibly damaging	0.55
IGL03279:Slco6d1	APN	1	98,394,405 (GRCm39)	missense	probably damaging	1.00
BB008:Slco6d1	UTSW	1	98,356,141 (GRCm39)	missense	probably damaging	1.00
BB018:Slco6d1	UTSW	1	98,356,141 (GRCm39)	missense	probably damaging	1.00
PIT4581001:Slco6d1	UTSW	1	98,351,050 (GRCm39)	missense	possibly damaging	0.46
R0326:Slco6d1	UTSW	1	98,418,359 (GRCm39)	missense	probably benign	0.02
R0359:Slco6d1	UTSW	1	98,394,422 (GRCm39)	missense	probably benign	0.21
R0554:Slco6d1	UTSW	1	98,394,422 (GRCm39)	missense	probably benign	0.21
R0589:Slco6d1	UTSW	1	98,427,472 (GRCm39)	splice site	probably benign
R0733:Slco6d1	UTSW	1	98,355,994 (GRCm39)	nonsense	probably null
R0883:Slco6d1	UTSW	1	98,349,124 (GRCm39)	missense	probably benign	0.00
R1316:Slco6d1	UTSW	1	98,394,518 (GRCm39)	missense	probably benign	0.02
R1370:Slco6d1	UTSW	1	98,350,819 (GRCm39)	missense	probably benign	0.01
R1401:Slco6d1	UTSW	1	98,418,341 (GRCm39)	missense	probably damaging	1.00
R1691:Slco6d1	UTSW	1	98,435,292 (GRCm39)	missense	probably benign	0.34
R1740:Slco6d1	UTSW	1	98,356,097 (GRCm39)	missense	probably damaging	1.00
R1827:Slco6d1	UTSW	1	98,348,941 (GRCm39)	missense	probably damaging	0.96
R2138:Slco6d1	UTSW	1	98,371,385 (GRCm39)	missense	probably benign	0.19
R2849:Slco6d1	UTSW	1	98,394,441 (GRCm39)	missense	probably benign	0.02
R3753:Slco6d1	UTSW	1	98,427,502 (GRCm39)	missense	probably damaging	0.99
R4066:Slco6d1	UTSW	1	98,391,571 (GRCm39)	critical splice acceptor site	probably benign
R4429:Slco6d1	UTSW	1	98,424,091 (GRCm39)	missense	possibly damaging	0.66
R4480:Slco6d1	UTSW	1	98,435,299 (GRCm39)	nonsense	probably null
R4656:Slco6d1	UTSW	1	98,350,928 (GRCm39)	missense	probably benign	0.06
R4810:Slco6d1	UTSW	1	98,350,979 (GRCm39)	missense	possibly damaging	0.83
R4814:Slco6d1	UTSW	1	98,350,899 (GRCm39)	missense	probably benign	0.15
R5389:Slco6d1	UTSW	1	98,371,369 (GRCm39)	missense	probably benign	0.00
R5504:Slco6d1	UTSW	1	98,349,064 (GRCm39)	missense	probably damaging	0.99
R5619:Slco6d1	UTSW	1	98,423,947 (GRCm39)	missense	probably damaging	1.00
R5688:Slco6d1	UTSW	1	98,408,493 (GRCm39)	missense	probably damaging	1.00
R5820:Slco6d1	UTSW	1	98,427,503 (GRCm39)	missense	probably damaging	0.97
R5878:Slco6d1	UTSW	1	98,391,561 (GRCm39)	splice site	probably benign
R6261:Slco6d1	UTSW	1	98,427,588 (GRCm39)	missense	probably benign	0.10
R6450:Slco6d1	UTSW	1	98,349,192 (GRCm39)	missense	probably benign	0.29
R6452:Slco6d1	UTSW	1	98,348,937 (GRCm39)	missense	probably benign	0.44
R7338:Slco6d1	UTSW	1	98,349,097 (GRCm39)	missense	probably benign	0.11
R7375:Slco6d1	UTSW	1	98,349,172 (GRCm39)	missense	probably damaging	1.00
R7456:Slco6d1	UTSW	1	98,349,082 (GRCm39)	missense	possibly damaging	0.66
R7567:Slco6d1	UTSW	1	98,425,252 (GRCm39)	missense	probably damaging	1.00
R7729:Slco6d1	UTSW	1	98,425,248 (GRCm39)	missense	probably damaging	0.98
R7931:Slco6d1	UTSW	1	98,356,141 (GRCm39)	missense	probably damaging	1.00
R8088:Slco6d1	UTSW	1	98,394,431 (GRCm39)	missense	possibly damaging	0.75
R9021:Slco6d1	UTSW	1	98,371,396 (GRCm39)	missense	probably benign	0.18
R9080:Slco6d1	UTSW	1	98,348,983 (GRCm39)	missense	probably benign	0.01
R9123:Slco6d1	UTSW	1	98,423,919 (GRCm39)	missense	probably damaging	1.00
R9310:Slco6d1	UTSW	1	98,427,619 (GRCm39)	missense	possibly damaging	0.71

Predicted Primers

PCR Primer
(F):5'- cagagggaaaccagaagGCTCAAAA -3'
(R):5'- ACAGGATAGCATGGGGCAACTCTTA -3'

Sequencing Primer
(F):5'- TTATAAAATCCCAACAGATGAACAGG -3'
(R):5'- GATCAAAGTTCAGTGAATGCTGATG -3'

Posted On

2014-05-23