Incidental Mutation 'R1736:Shisa4'
ID199698
Institutional Source Beutler Lab
Gene Symbol Shisa4
Ensembl Gene ENSMUSG00000041889
Gene Nameshisa family member 4
SynonymsTmem58, 9330132O05Rik
MMRRC Submission 039768-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R1736 (G1)
Quality Score225
Status Validated
Chromosome1
Chromosomal Location135371057-135375237 bp(-) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) A to T at 135371962 bp
ZygosityHeterozygous
Amino Acid Change Tyrosine to Stop codon at position 194 (Y194*)
Ref Sequence ENSEMBL: ENSMUSP00000046033 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000041240] [ENSMUST00000059352]
Predicted Effect probably null
Transcript: ENSMUST00000041240
AA Change: Y194*
SMART Domains Protein: ENSMUSP00000046033
Gene: ENSMUSG00000041889
AA Change: Y194*

DomainStartEndE-ValueType
signal peptide 1 27 N/A INTRINSIC
Pfam:Shisa 28 194 1.9e-14 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000059352
SMART Domains Protein: ENSMUSP00000061597
Gene: ENSMUSG00000048096

DomainStartEndE-ValueType
Pfam:Tropomodulin 5 127 1e-19 PFAM
low complexity region 177 190 N/A INTRINSIC
low complexity region 202 220 N/A INTRINSIC
PDB:1IO0|A 296 467 5e-35 PDB
SCOP:d1a4ya_ 311 445 7e-5 SMART
low complexity region 469 483 N/A INTRINSIC
low complexity region 500 523 N/A INTRINSIC
low complexity region 526 540 N/A INTRINSIC
WH2 569 588 1.05e-3 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159181
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159918
Meta Mutation Damage Score 0.644 question?
Coding Region Coverage
  • 1x: 97.6%
  • 3x: 96.9%
  • 10x: 95.2%
  • 20x: 92.0%
Validation Efficiency 97% (57/59)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele are fertile and phenotypically normal. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 54 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adamts16 G A 13: 70,779,518 probably benign Het
Adcy3 A G 12: 4,200,998 N586D possibly damaging Het
Ak6 T A 13: 100,655,181 probably null Het
Ankrd66 T C 17: 43,543,518 D41G probably benign Het
Atp8b2 G A 3: 89,952,694 P339S probably damaging Het
BC025446 G A 15: 75,217,720 G26R probably damaging Het
Cacna1d C T 14: 30,089,863 V1297I probably damaging Het
Cbl A T 9: 44,152,895 D781E possibly damaging Het
Cep295 C T 9: 15,340,883 E397K probably damaging Het
Ces4a G A 8: 105,138,097 G69S probably damaging Het
Clint1 A G 11: 45,906,177 probably null Het
Col6a3 A G 1: 90,779,059 Y2111H unknown Het
Csnk1g1 A G 9: 66,019,915 probably null Het
Dse A T 10: 34,153,149 N648K probably damaging Het
Dsp A G 13: 38,192,990 K1584E probably benign Het
Ezh2 A T 6: 47,576,660 M41K probably damaging Het
Fam71e2 A G 7: 4,758,154 S520P probably damaging Het
Fscn2 G A 11: 120,368,026 G466S probably damaging Het
Gm15217 A G 14: 46,383,206 probably benign Het
Gm9696 T C 3: 59,972,275 noncoding transcript Het
Gosr2 G A 11: 103,679,250 Q162* probably null Het
Hectd4 T A 5: 121,349,530 H3529Q possibly damaging Het
Klf7 C A 1: 64,079,213 R75L possibly damaging Het
Kmt2c A T 5: 25,290,527 I4074K probably damaging Het
Map3k11 A G 19: 5,697,401 D555G probably benign Het
Mindy2 A G 9: 70,631,030 I341T probably damaging Het
Mrnip G A 11: 50,176,891 probably null Het
Muc5b G A 7: 141,859,107 C1930Y unknown Het
Nfatc3 T G 8: 106,078,850 I109S probably damaging Het
Npas1 G T 7: 16,474,616 A112D probably benign Het
Npffr2 T A 5: 89,568,066 I84N probably damaging Het
Nxph4 T A 10: 127,526,596 H142L probably damaging Het
Otud4 T A 8: 79,651,665 probably benign Het
Per3 A G 4: 151,009,248 probably null Het
Pigr G A 1: 130,841,803 R117Q possibly damaging Het
Plec C T 15: 76,186,218 V931M probably damaging Het
Prex2 T A 1: 11,089,884 probably benign Het
Sall4 G A 2: 168,752,635 P420L probably benign Het
Sap30bp A G 11: 115,964,220 K252R probably damaging Het
Sec63 T A 10: 42,827,918 Y692* probably null Het
Sema3e C T 5: 14,210,376 T181M probably damaging Het
Sf3b3 T C 8: 110,813,832 I986V probably benign Het
Slc17a6 G A 7: 51,661,585 probably benign Het
Smg1 T G 7: 118,165,967 probably null Het
Smim7 C T 8: 72,571,005 G9R probably damaging Het
Spata31d1d C T 13: 59,726,497 G1075R probably benign Het
Sphkap G A 1: 83,277,515 R838* probably null Het
Stag3 T C 5: 138,304,509 probably benign Het
Tbce A G 13: 14,009,642 I217T possibly damaging Het
Tpk1 G A 6: 43,611,350 P27S probably benign Het
Tsc22d1 A G 14: 76,418,357 I2V probably benign Het
Tulp4 T G 17: 6,233,215 V1173G possibly damaging Het
Uchl1 T C 5: 66,677,074 probably null Het
Ugt2b38 T A 5: 87,423,633 Q180L probably benign Het
Other mutations in Shisa4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00228:Shisa4 APN 1 135373285 missense probably damaging 1.00
IGL03029:Shisa4 APN 1 135373176 missense probably damaging 0.97
R0798:Shisa4 UTSW 1 135373148 splice site probably benign
R1970:Shisa4 UTSW 1 135372274 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- ACGACTTGAAAACAGAGACTGTGGC -3'
(R):5'- ATGCACGACCTGGAATCCTTGTCC -3'

Sequencing Primer
(F):5'- TAGCTCATGAATCCCAAGTCCTC -3'
(R):5'- CTGGTGGATTACCTTTCCCAGG -3'
Posted On2014-05-23