Mutagenetix > Incidental Mutation

Incidental Mutation 'R1740:Rnf25'

200247

Institutional Source

Beutler Lab

Gene Symbol

Rnf25

Ensembl Gene

ENSMUSG00000026171

Gene Name

ring finger protein 25

Synonyms

AO7, 0610009H16Rik

MMRRC Submission

039772-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1740 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

74632907-74640556 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 74637886 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 28 (V28A)

Ref Sequence

ENSEMBL: ENSMUSP00000120646 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027357] [ENSMUST00000087183] [ENSMUST00000087186] [ENSMUST00000113694] [ENSMUST00000113721] [ENSMUST00000127938] [ENSMUST00000154874] [ENSMUST00000132081] [ENSMUST00000135140] [ENSMUST00000189830] [ENSMUST00000148456]

AlphaFold

Q9QZR0

Predicted Effect

probably damaging
Transcript: ENSMUST00000027357
AA Change: V61A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000027357
Gene: ENSMUSG00000026171
AA Change: V61A

Domain	Start	End	E-Value	Type
RWD	18	127	4.66e-31	SMART
RING	134	198	2.87e-5	SMART
low complexity region	368	378	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000087183

SMART Domains

Protein: ENSMUSP00000084430
Gene: ENSMUSG00000033276

Domain	Start	End	E-Value	Type
S_TKc	4	254	5.24e-100	SMART
low complexity region	405	419	N/A	INTRINSIC
low complexity region	472	485	N/A	INTRINSIC
low complexity region	705	718	N/A	INTRINSIC
low complexity region	826	836	N/A	INTRINSIC
low complexity region	852	860	N/A	INTRINSIC
low complexity region	900	914	N/A	INTRINSIC
low complexity region	956	969	N/A	INTRINSIC
low complexity region	994	1009	N/A	INTRINSIC
low complexity region	1014	1030	N/A	INTRINSIC
Pfam:HEAT_2	1112	1218	7.8e-11	PFAM
Pfam:HEAT_2	1158	1259	3e-11	PFAM
Pfam:HEAT_EZ	1207	1261	4.3e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000087186

SMART Domains

Protein: ENSMUSP00000084433
Gene: ENSMUSG00000033276

Domain	Start	End	E-Value	Type
S_TKc	4	254	5.24e-100	SMART
low complexity region	405	419	N/A	INTRINSIC
low complexity region	577	590	N/A	INTRINSIC
low complexity region	698	708	N/A	INTRINSIC
low complexity region	724	732	N/A	INTRINSIC
low complexity region	772	786	N/A	INTRINSIC
low complexity region	828	841	N/A	INTRINSIC
low complexity region	866	881	N/A	INTRINSIC
low complexity region	886	902	N/A	INTRINSIC
Pfam:HEAT_2	984	1090	2.9e-10	PFAM
Pfam:HEAT_2	1026	1131	9.6e-11	PFAM
Pfam:HEAT_EZ	1039	1092	2.2e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000113694

SMART Domains

Protein: ENSMUSP00000109324
Gene: ENSMUSG00000033276

Domain	Start	End	E-Value	Type
Pfam:Pkinase	4	145	1.6e-46	PFAM
Pfam:Pkinase_Tyr	4	145	3.3e-29	PFAM
Pfam:YrbL-PhoP_reg	17	143	7.1e-8	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000113721
AA Change: V61A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000109350
Gene: ENSMUSG00000026171
AA Change: V61A

Domain	Start	End	E-Value	Type
RWD	18	127	4.66e-31	SMART
RING	134	197	3.53e-5	SMART
low complexity region	367	377	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000127938

SMART Domains

Protein: ENSMUSP00000116973
Gene: ENSMUSG00000026171

Domain	Start	End	E-Value	Type
RING	23	87	2.87e-5	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128491

Predicted Effect

probably damaging
Transcript: ENSMUST00000154874
AA Change: V28A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000120646
Gene: ENSMUSG00000026171
AA Change: V28A

Domain	Start	End	E-Value	Type
RWD	1	94	6.36e-15	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000132081

Predicted Effect

unknown
Transcript: ENSMUST00000136078
AA Change: V66A

SMART Domains

Protein: ENSMUSP00000117692
Gene: ENSMUSG00000026171
AA Change: V66A

Domain	Start	End	E-Value	Type
RWD	24	123	1.97e-20	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145673

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149649

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151003

Predicted Effect

probably benign
Transcript: ENSMUST00000135140

Predicted Effect

probably benign
Transcript: ENSMUST00000189830

SMART Domains

Protein: ENSMUSP00000140912
Gene: ENSMUSG00000033276

Domain	Start	End	E-Value	Type
Pfam:Pkinase	1	56	8.1e-8	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000148456

SMART Domains

Protein: ENSMUSP00000120020
Gene: ENSMUSG00000033276

Domain	Start	End	E-Value	Type
S_TKc	4	254	5.24e-100	SMART
low complexity region	405	419	N/A	INTRINSIC
low complexity region	472	485	N/A	INTRINSIC
low complexity region	705	718	N/A	INTRINSIC
low complexity region	826	836	N/A	INTRINSIC
low complexity region	852	860	N/A	INTRINSIC
low complexity region	898	912	N/A	INTRINSIC
low complexity region	954	967	N/A	INTRINSIC
low complexity region	992	1007	N/A	INTRINSIC
low complexity region	1012	1028	N/A	INTRINSIC

Meta Mutation Damage Score

0.7122

Coding Region Coverage

1x: 97.5%
3x: 97.0%
10x: 95.5%
20x: 93.0%

Validation Efficiency

99% (69/70)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains a RING finger motif. The mouse counterpart of this protein has been shown to interact with Rela, the p65 subunit of NF-kappaB (NFKB), and modulate NFKB-mediated transcription activity. The mouse protein also binds ubiquitin-conjugating enzymes (E2s) and is a substrate for E2-dependent ubiquitination. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610021A01Rik	T	A	7: 41,275,549 (GRCm39)	C417*	probably null	Het
4930548G14Rik	G	A	15: 46,488,885 (GRCm39)		noncoding transcript	Het
Abcc12	T	A	8: 87,232,126 (GRCm39)	K1311*	probably null	Het
Abcc12	T	C	8: 87,236,400 (GRCm39)	D1138G	possibly damaging	Het
Adam32	A	G	8: 25,411,314 (GRCm39)	S116P	probably damaging	Het
Arhgef26	C	T	3: 62,331,004 (GRCm39)	L39F	probably damaging	Het
Babam1	T	C	8: 71,855,663 (GRCm39)	I252T	probably damaging	Het
Btf3	C	T	13: 98,452,804 (GRCm39)	M1I	probably null	Het
Ccdc61	G	T	7: 18,637,862 (GRCm39)		probably benign	Het
Ccdc89	C	T	7: 90,075,946 (GRCm39)	S52F	probably damaging	Het
Cds2	T	A	2: 132,144,133 (GRCm39)	I320N	possibly damaging	Het
Cebpe	T	C	14: 54,949,399 (GRCm39)	Y6C	probably damaging	Het
Cep250	T	A	2: 155,815,276 (GRCm39)	I598N	probably damaging	Het
Cep350	T	A	1: 155,804,579 (GRCm39)	I835F	probably damaging	Het
Ces3a	T	C	8: 105,775,317 (GRCm39)	L22P	probably damaging	Het
Cfap221	T	C	1: 119,873,558 (GRCm39)	S490G	probably benign	Het
Cyp2j11	A	G	4: 96,207,613 (GRCm39)	V234A	probably benign	Het
Dgat1	T	C	15: 76,386,929 (GRCm39)	H399R	probably damaging	Het
Dnah10	A	T	5: 124,850,254 (GRCm39)		probably null	Het
Ebpl	T	G	14: 61,578,656 (GRCm39)	K193T	probably benign	Het
Entpd5	T	C	12: 84,443,545 (GRCm39)	N66S	probably benign	Het
Fcgbp	G	T	7: 27,800,674 (GRCm39)	G1240V	possibly damaging	Het
Gabra5	A	G	7: 57,071,590 (GRCm39)	S209P	probably benign	Het
Glce	A	T	9: 61,977,815 (GRCm39)	V23D	probably damaging	Het
Gm14226	GACTGTTAC	GAC	2: 154,866,851 (GRCm39)		probably benign	Het
Gtf2h1	A	G	7: 46,461,890 (GRCm39)	N296S	probably null	Het
Herc6	T	C	6: 57,629,050 (GRCm39)	S654P	probably benign	Het
Kcnk3	A	T	5: 30,779,321 (GRCm39)	M124L	possibly damaging	Het
Lamb2	T	G	9: 108,359,127 (GRCm39)	V281G	probably damaging	Het
Lctl	A	T	9: 64,040,389 (GRCm39)	D444V	probably damaging	Het
Mcm2	A	G	6: 88,861,026 (GRCm39)	F891L	probably damaging	Het
Mcub	A	T	3: 129,712,376 (GRCm39)	H166Q	probably benign	Het
Mical2	G	T	7: 111,933,043 (GRCm39)	R739L	probably benign	Het
Mideas	T	C	12: 84,219,676 (GRCm39)	E426G	probably damaging	Het
Mkrn2	G	T	6: 115,590,330 (GRCm39)	A229S	probably damaging	Het
Mmp7	A	G	9: 7,695,278 (GRCm39)	Y80C	possibly damaging	Het
Mpp2	T	C	11: 101,953,222 (GRCm39)		probably null	Het
Msh6	C	A	17: 88,293,150 (GRCm39)	T635K	possibly damaging	Het
Mvd	T	A	8: 123,163,286 (GRCm39)	T315S	probably benign	Het
Myocd	C	T	11: 65,109,347 (GRCm39)		probably benign	Het
Nav1	C	T	1: 135,386,127 (GRCm39)		probably null	Het
Or4k48	T	A	2: 111,476,214 (GRCm39)	I43F	probably damaging	Het
Pde4b	A	T	4: 102,344,548 (GRCm39)	D141V	probably damaging	Het
Pdgfrb	A	T	18: 61,214,905 (GRCm39)	D978V	possibly damaging	Het
Prss55	T	C	14: 64,313,129 (GRCm39)	T252A	probably damaging	Het
Psd3	A	T	8: 68,573,491 (GRCm39)	V230E	probably damaging	Het
Ptk2	A	G	15: 73,114,255 (GRCm39)	V701A	possibly damaging	Het
Ptprn	A	G	1: 75,238,694 (GRCm39)	V82A	probably damaging	Het
Ptpru	G	T	4: 131,520,989 (GRCm39)		probably null	Het
Raph1	T	A	1: 60,558,183 (GRCm39)	K258*	probably null	Het
Slc25a4	C	T	8: 46,661,540 (GRCm39)	V212M	probably benign	Het
Slc39a3	T	C	10: 80,867,342 (GRCm39)	S135G	probably damaging	Het
Slco6d1	A	G	1: 98,356,097 (GRCm39)	I220M	probably damaging	Het
Smim19	G	T	8: 22,963,544 (GRCm39)	Y21*	probably null	Het
Speer4f1	A	C	5: 17,683,759 (GRCm39)	Y141S	probably damaging	Het
Srgap2	G	A	1: 131,217,126 (GRCm39)	P1062L	probably benign	Het
Stra8	A	T	6: 34,904,654 (GRCm39)		probably benign	Het
Timm21	G	C	18: 84,967,387 (GRCm39)	L130V	probably damaging	Het
Tmem40	A	G	6: 115,715,960 (GRCm39)	S76P	probably benign	Het
Unc13b	C	T	4: 43,240,285 (GRCm39)	R3569W	probably damaging	Het
Vmn1r128	A	T	7: 21,083,869 (GRCm39)	Q191L	probably benign	Het
Washc2	T	A	6: 116,208,593 (GRCm39)		probably benign	Het

Other mutations in Rnf25

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02542:Rnf25	APN	1	74,633,260 (GRCm39)	missense	probably benign	0.02
IGL03268:Rnf25	APN	1	74,638,217 (GRCm39)	unclassified	probably benign
R1570:Rnf25	UTSW	1	74,634,426 (GRCm39)	missense	probably damaging	1.00
R2086:Rnf25	UTSW	1	74,633,126 (GRCm39)	missense	probably damaging	0.99
R2939:Rnf25	UTSW	1	74,635,047 (GRCm39)	missense	possibly damaging	0.50
R2940:Rnf25	UTSW	1	74,635,047 (GRCm39)	missense	possibly damaging	0.50
R4556:Rnf25	UTSW	1	74,638,264 (GRCm39)	missense	probably damaging	1.00
R4770:Rnf25	UTSW	1	74,633,099 (GRCm39)	missense	probably damaging	1.00
R5075:Rnf25	UTSW	1	74,634,803 (GRCm39)	missense	probably benign
R5394:Rnf25	UTSW	1	74,634,411 (GRCm39)	missense	probably damaging	1.00
R6319:Rnf25	UTSW	1	74,634,890 (GRCm39)	missense	probably damaging	1.00
R6960:Rnf25	UTSW	1	74,634,403 (GRCm39)	missense	possibly damaging	0.66
R8039:Rnf25	UTSW	1	74,633,123 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- GAATTGTCCCTGCTCCAACTAGCC -3'
(R):5'- AAGTCCAGCGTGCATTCCTCTACC -3'

Sequencing Primer
(F):5'- TGGATCTGCTCATCTGAAAGTC -3'
(R):5'- ACCTGCTTTACTGTCTCGC -3'

Posted On

2014-05-23