Incidental Mutation 'R1411:Acp4'
ID |
200805 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Acp4
|
Ensembl Gene |
ENSMUSG00000012777 |
Gene Name |
acid phosphatase 4 |
Synonyms |
Acpt, EG546967 |
MMRRC Submission |
039467-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.094)
|
Stock # |
R1411 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
7 |
Chromosomal Location |
43901572-43906802 bp(-) (GRCm39) |
Type of Mutation |
unclassified |
DNA Base Change (assembly) |
A to G
at 43906267 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000140200
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000012921]
[ENSMUST00000055858]
[ENSMUST00000071296]
[ENSMUST00000084937]
[ENSMUST00000107945]
[ENSMUST00000107948]
[ENSMUST00000118216]
[ENSMUST00000124863]
[ENSMUST00000188382]
[ENSMUST00000107949]
[ENSMUST00000107950]
[ENSMUST00000188111]
|
AlphaFold |
D3YTS9 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000012921
|
SMART Domains |
Protein: ENSMUSP00000012921 Gene: ENSMUSG00000012777
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
27 |
N/A |
INTRINSIC |
Pfam:His_Phos_2
|
30 |
338 |
3.2e-53 |
PFAM |
transmembrane domain
|
391 |
413 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000055858
|
SMART Domains |
Protein: ENSMUSP00000103583 Gene: ENSMUSG00000045411
Domain | Start | End | E-Value | Type |
low complexity region
|
53 |
66 |
N/A |
INTRINSIC |
low complexity region
|
167 |
177 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000071296
|
SMART Domains |
Protein: ENSMUSP00000071265 Gene: ENSMUSG00000045411
Domain | Start | End | E-Value | Type |
low complexity region
|
53 |
66 |
N/A |
INTRINSIC |
low complexity region
|
167 |
177 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000084937
|
SMART Domains |
Protein: ENSMUSP00000095894 Gene: ENSMUSG00000045411
Domain | Start | End | E-Value | Type |
low complexity region
|
53 |
66 |
N/A |
INTRINSIC |
low complexity region
|
167 |
177 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000107945
|
SMART Domains |
Protein: ENSMUSP00000103578 Gene: ENSMUSG00000012777
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
27 |
N/A |
INTRINSIC |
Pfam:His_Phos_2
|
30 |
324 |
2.3e-25 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000107948
|
SMART Domains |
Protein: ENSMUSP00000103581 Gene: ENSMUSG00000045411
Domain | Start | End | E-Value | Type |
low complexity region
|
53 |
66 |
N/A |
INTRINSIC |
low complexity region
|
167 |
177 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000118216
|
SMART Domains |
Protein: ENSMUSP00000112922 Gene: ENSMUSG00000012777
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
27 |
N/A |
INTRINSIC |
Pfam:His_Phos_2
|
30 |
338 |
3.2e-53 |
PFAM |
transmembrane domain
|
392 |
414 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000125318
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000187314
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000124863
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000137742
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147088
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000188382
|
SMART Domains |
Protein: ENSMUSP00000140200 Gene: ENSMUSG00000045411
Domain | Start | End | E-Value | Type |
low complexity region
|
53 |
66 |
N/A |
INTRINSIC |
low complexity region
|
167 |
177 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000107949
|
SMART Domains |
Protein: ENSMUSP00000103582 Gene: ENSMUSG00000045411
Domain | Start | End | E-Value | Type |
low complexity region
|
53 |
66 |
N/A |
INTRINSIC |
low complexity region
|
167 |
177 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000107950
|
SMART Domains |
Protein: ENSMUSP00000103584 Gene: ENSMUSG00000045411
Domain | Start | End | E-Value | Type |
low complexity region
|
53 |
66 |
N/A |
INTRINSIC |
low complexity region
|
167 |
177 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000188111
|
SMART Domains |
Protein: ENSMUSP00000139694 Gene: ENSMUSG00000045411
Domain | Start | End | E-Value | Type |
low complexity region
|
53 |
66 |
N/A |
INTRINSIC |
low complexity region
|
167 |
177 |
N/A |
INTRINSIC |
|
Coding Region Coverage |
- 1x: 97.5%
- 3x: 96.9%
- 10x: 95.3%
- 20x: 92.5%
|
Validation Efficiency |
100% (46/46) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Acid phosphatases are enzymes capable of hydrolyzing orthophosphoric acid esters in an acid medium. This gene is up-regulated by androgens and is down-regulated by estrogens in the prostate cancer cell line. This gene exhibits a lower level of expression in testicular cancer tissues than in normal tissues. The protein encoded by this gene has structural similarity to prostatic and lysosomal acid phosphatases. Alternatively spliced transcript variants have been described, but their biological validity has not been determined. [provided by RefSeq, Jul 2008]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 44 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abhd8 |
T |
A |
8: 71,914,374 (GRCm39) |
I85F |
probably damaging |
Het |
Baz1b |
T |
C |
5: 135,259,177 (GRCm39) |
F1080L |
possibly damaging |
Het |
Cbx5 |
A |
T |
15: 103,121,547 (GRCm39) |
M30K |
probably benign |
Het |
Cdc73 |
A |
G |
1: 143,485,252 (GRCm39) |
|
probably benign |
Het |
Cdcp1 |
A |
T |
9: 123,019,177 (GRCm39) |
L34Q |
probably damaging |
Het |
Chd8 |
C |
T |
14: 52,462,103 (GRCm39) |
V738I |
probably benign |
Het |
Cpeb2 |
T |
G |
5: 43,391,113 (GRCm39) |
|
probably benign |
Het |
Cyp2c67 |
T |
A |
19: 39,627,035 (GRCm39) |
D265V |
probably damaging |
Het |
Cyp2j11 |
A |
G |
4: 96,233,453 (GRCm39) |
I81T |
probably benign |
Het |
Dbx2 |
T |
C |
15: 95,530,262 (GRCm39) |
E235G |
probably damaging |
Het |
Dgkq |
C |
A |
5: 108,798,228 (GRCm39) |
V677F |
probably damaging |
Het |
Ercc5 |
A |
G |
1: 44,217,441 (GRCm39) |
N928S |
probably damaging |
Het |
Flt1 |
C |
T |
5: 147,517,126 (GRCm39) |
V1054M |
probably damaging |
Het |
Flywch1 |
T |
C |
17: 23,974,798 (GRCm39) |
D614G |
probably damaging |
Het |
Frmd3 |
T |
C |
4: 74,071,858 (GRCm39) |
F247L |
probably damaging |
Het |
Gm1527 |
A |
G |
3: 28,968,632 (GRCm39) |
N228S |
probably benign |
Het |
Gpld1 |
T |
A |
13: 25,146,791 (GRCm39) |
L251Q |
probably damaging |
Het |
Gvin-ps3 |
C |
T |
7: 105,682,686 (GRCm39) |
A190T |
probably benign |
Het |
Gzma |
C |
T |
13: 113,232,742 (GRCm39) |
V117I |
probably benign |
Het |
Hydin |
C |
A |
8: 111,301,663 (GRCm39) |
T3798K |
probably benign |
Het |
Il1rapl1 |
T |
A |
X: 85,790,904 (GRCm39) |
S679C |
possibly damaging |
Het |
Lrrc8c |
G |
A |
5: 105,756,045 (GRCm39) |
A607T |
probably damaging |
Het |
Ltbp1 |
A |
G |
17: 75,532,280 (GRCm39) |
Q118R |
possibly damaging |
Het |
Mfsd4b4 |
A |
T |
10: 39,768,136 (GRCm39) |
M319K |
probably damaging |
Het |
Mroh2b |
A |
C |
15: 4,947,799 (GRCm39) |
H538P |
probably damaging |
Het |
Nrbp1 |
T |
A |
5: 31,403,157 (GRCm39) |
I210N |
probably damaging |
Het |
Nup188 |
A |
G |
2: 30,233,807 (GRCm39) |
T1733A |
probably benign |
Het |
Nup58 |
A |
T |
14: 60,482,119 (GRCm39) |
|
probably benign |
Het |
Ofcc1 |
A |
G |
13: 40,296,263 (GRCm39) |
S524P |
probably benign |
Het |
Or6x1 |
C |
T |
9: 40,098,435 (GRCm39) |
T8I |
possibly damaging |
Het |
Padi4 |
C |
T |
4: 140,479,914 (GRCm39) |
S413N |
probably damaging |
Het |
Pdzrn4 |
A |
G |
15: 92,668,894 (GRCm39) |
*1015W |
probably null |
Het |
Pkhd1 |
G |
A |
1: 20,444,120 (GRCm39) |
P2314L |
probably damaging |
Het |
Serpinb9c |
C |
G |
13: 33,335,817 (GRCm39) |
V212L |
probably benign |
Het |
Slc25a23 |
A |
G |
17: 57,366,622 (GRCm39) |
F18L |
probably damaging |
Het |
Smarca4 |
C |
A |
9: 21,570,251 (GRCm39) |
N751K |
probably damaging |
Het |
Tfip11 |
G |
T |
5: 112,480,899 (GRCm39) |
V292L |
probably benign |
Het |
Tnrc18 |
T |
C |
5: 142,751,702 (GRCm39) |
K1201R |
unknown |
Het |
Vmn1r199 |
T |
C |
13: 22,567,671 (GRCm39) |
F322L |
probably benign |
Het |
Vmn1r201 |
T |
C |
13: 22,658,849 (GRCm39) |
V21A |
probably benign |
Het |
Vmn2r108 |
A |
T |
17: 20,683,107 (GRCm39) |
I699K |
probably damaging |
Het |
Vmn2r117 |
T |
C |
17: 23,679,527 (GRCm39) |
N566D |
probably damaging |
Het |
Wdr12 |
A |
T |
1: 60,127,231 (GRCm39) |
D141E |
probably benign |
Het |
Zfp974 |
A |
G |
7: 27,610,634 (GRCm39) |
S364P |
probably benign |
Het |
|
Other mutations in Acp4 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00157:Acp4
|
APN |
7 |
43,902,875 (GRCm39) |
missense |
possibly damaging |
0.56 |
IGL01067:Acp4
|
APN |
7 |
43,902,876 (GRCm39) |
missense |
probably benign |
0.08 |
IGL01739:Acp4
|
APN |
7 |
43,906,210 (GRCm39) |
nonsense |
probably null |
|
IGL02013:Acp4
|
APN |
7 |
43,904,505 (GRCm39) |
missense |
probably benign |
0.13 |
IGL02225:Acp4
|
APN |
7 |
43,906,165 (GRCm39) |
splice site |
probably null |
|
IGL02648:Acp4
|
APN |
7 |
43,904,414 (GRCm39) |
unclassified |
probably benign |
|
R0764:Acp4
|
UTSW |
7 |
43,901,738 (GRCm39) |
unclassified |
probably benign |
|
R1328:Acp4
|
UTSW |
7 |
43,906,516 (GRCm39) |
splice site |
probably null |
|
R1754:Acp4
|
UTSW |
7 |
43,904,428 (GRCm39) |
missense |
probably benign |
0.09 |
R2163:Acp4
|
UTSW |
7 |
43,905,400 (GRCm39) |
missense |
probably damaging |
1.00 |
R2193:Acp4
|
UTSW |
7 |
43,902,993 (GRCm39) |
missense |
probably benign |
0.01 |
R5120:Acp4
|
UTSW |
7 |
43,906,395 (GRCm39) |
missense |
probably damaging |
1.00 |
R7890:Acp4
|
UTSW |
7 |
43,903,528 (GRCm39) |
missense |
probably damaging |
1.00 |
R8557:Acp4
|
UTSW |
7 |
43,905,272 (GRCm39) |
critical splice donor site |
probably null |
|
R8915:Acp4
|
UTSW |
7 |
43,903,751 (GRCm39) |
missense |
possibly damaging |
0.64 |
R8959:Acp4
|
UTSW |
7 |
43,906,399 (GRCm39) |
missense |
possibly damaging |
0.95 |
R9685:Acp4
|
UTSW |
7 |
43,906,733 (GRCm39) |
unclassified |
probably benign |
|
|
Predicted Primers |
PCR Primer
(F):5'- ACTTAGAAGCCCATAGGGGTGCAG -3'
(R):5'- TCCAAGTCAGTCCTGACCTGGTTC -3'
Sequencing Primer
(F):5'- CCATAGGGGTGCAGGTCAAATAG -3'
(R):5'- AACATCCCCAGGTGTTCCG -3'
|
Posted On |
2014-05-23 |