Incidental Mutation 'Y5404:Gm4978'
ID 201544
Institutional Source Beutler Lab
Gene Symbol Gm4978
Ensembl Gene ENSMUSG00000062874
Gene Name predicted gene 4978
Synonyms
Accession Numbers
Essential gene? Not available question?
Stock # Y5404 ()
Quality Score 191
Status Not validated
Chromosome 9
Chromosomal Location 69357517-69358317 bp(-) (GRCm39)
Type of Mutation unclassified
DNA Base Change (assembly) T to G at 69357984 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000117979 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000034756] [ENSMUST00000123470] [ENSMUST00000134907]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000034756
SMART Domains Protein: ENSMUSP00000034756
Gene: ENSMUSG00000032231

DomainStartEndE-ValueType
ANX 50 102 5.79e-20 SMART
ANX 122 174 1.5e-27 SMART
ANX 207 259 8.2e-11 SMART
ANX 282 334 1.6e-22 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000071565
SMART Domains Protein: ENSMUSP00000071496
Gene: ENSMUSG00000062874

DomainStartEndE-ValueType
low complexity region 2 28 N/A INTRINSIC
Pfam:Ribosomal_L7Ae 123 217 9.7e-26 PFAM
low complexity region 252 263 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000123470
SMART Domains Protein: ENSMUSP00000122175
Gene: ENSMUSG00000032231

DomainStartEndE-ValueType
ANX 50 102 5.79e-20 SMART
ANX 122 174 1.5e-27 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000134907
SMART Domains Protein: ENSMUSP00000117979
Gene: ENSMUSG00000032231

DomainStartEndE-ValueType
ANX 50 102 5.79e-20 SMART
ANX 122 174 1.5e-27 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000213736
Coding Region Coverage
  • 1x: 97.3%
  • 3x: 96.5%
  • 10x: 94.0%
  • 20x: 88.5%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 4 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Bbs1 T C 19: 4,950,635 (GRCm39) M203V possibly damaging Het
Drc7 GGATGATGATGATGATGATG GGATGATGATGATGATG 8: 95,794,778 (GRCm39) probably benign Het
Rpf1 T C 3: 146,218,591 (GRCm39) T148A probably damaging Het
Syt4 A G 18: 31,576,844 (GRCm39) F170S probably damaging Het
Other mutations in Gm4978
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01717:Gm4978 APN 9 69,358,155 (GRCm39) unclassified probably benign
IGL02549:Gm4978 APN 9 69,357,641 (GRCm39) unclassified probably benign
IGL02661:Gm4978 APN 9 69,358,180 (GRCm39) unclassified probably benign
R4940:Gm4978 UTSW 9 69,358,154 (GRCm39) unclassified probably benign
Y5407:Gm4978 UTSW 9 69,357,984 (GRCm39) unclassified probably benign
Predicted Primers PCR Primer
(F):5'- AGCTCAATGGGCTCTACGTC -3'
(R):5'- TGTTTGAGAAGAGGCCCAAG -3'

Sequencing Primer
(F):5'- GCTCTACGTCATGGGCAATCAC -3'
(R):5'- CAGCTACTCAGCTGCTTA -3'
Posted On 2014-06-23