Mutagenetix > Incidental Mutation

Incidental Mutation 'R1802:Cnot8'

203227

Institutional Source

Beutler Lab

Gene Symbol

Cnot8

Ensembl Gene

ENSMUSG00000020515

Gene Name

CCR4-NOT transcription complex, subunit 8

Synonyms

1500015I04Rik, 1810022F04Rik

MMRRC Submission

039832-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.907) question?

Stock #

R1802 (G1)

Quality Score

219

Status

Not validated

Chromosome

Chromosomal Location

57994979-58009420 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 58008361 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Arginine at position 276 (C276R)

Ref Sequence

ENSEMBL: ENSMUSP00000104471 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020822] [ENSMUST00000035604] [ENSMUST00000102711] [ENSMUST00000108843] [ENSMUST00000172035]

AlphaFold

Q9D8X5

Predicted Effect

probably benign
Transcript: ENSMUST00000020822
AA Change: C276R

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000020822
Gene: ENSMUSG00000020515
AA Change: C276R

Domain	Start	End	E-Value	Type
Pfam:CAF1	15	139	4.3e-15	PFAM
Pfam:CAF1	138	238	1.4e-15	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000035604

SMART Domains

Protein: ENSMUSP00000036603
Gene: ENSMUSG00000037275

Domain	Start	End	E-Value	Type
WD40	53	95	1.47e-6	SMART
WD40	98	138	6.19e-1	SMART
WD40	141	180	1.54e0	SMART
WD40	184	255	2.45e-8	SMART
WD40	280	312	1.42e2	SMART
WD40	316	365	1.99e0	SMART
WD40	368	408	5.15e-2	SMART
WD40	415	455	8.49e-3	SMART
WD40	460	511	8.84e1	SMART
WD40	529	564	4.28e0	SMART
WD40	567	613	2.24e-2	SMART
WD40	628	668	2.2e-10	SMART
WD40	671	711	2.31e-4	SMART
low complexity region	731	754	N/A	INTRINSIC
low complexity region	788	804	N/A	INTRINSIC
low complexity region	813	844	N/A	INTRINSIC
low complexity region	1064	1084	N/A	INTRINSIC
low complexity region	1117	1132	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000102711

SMART Domains

Protein: ENSMUSP00000099772
Gene: ENSMUSG00000037275

Domain	Start	End	E-Value	Type
WD40	53	95	1.47e-6	SMART
WD40	98	138	6.19e-1	SMART
WD40	141	180	1.54e0	SMART
WD40	184	255	2.45e-8	SMART
WD40	280	312	1.42e2	SMART
WD40	316	365	1.99e0	SMART
WD40	368	408	5.15e-2	SMART
WD40	415	455	8.49e-3	SMART
WD40	460	511	8.84e1	SMART
WD40	529	564	4.28e0	SMART
WD40	567	613	2.24e-2	SMART
WD40	628	668	2.2e-10	SMART
WD40	671	711	2.31e-4	SMART
low complexity region	731	754	N/A	INTRINSIC
low complexity region	788	804	N/A	INTRINSIC
low complexity region	813	844	N/A	INTRINSIC
low complexity region	1063	1083	N/A	INTRINSIC
low complexity region	1116	1131	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000108843
AA Change: C276R

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000104471
Gene: ENSMUSG00000020515
AA Change: C276R

Domain	Start	End	E-Value	Type
Pfam:CAF1	13	240	1.3e-73	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133923

Predicted Effect

probably benign
Transcript: ENSMUST00000172035

SMART Domains

Protein: ENSMUSP00000131842
Gene: ENSMUSG00000037275

Domain	Start	End	E-Value	Type
WD40	53	95	1.47e-6	SMART
WD40	98	138	6.19e-1	SMART
WD40	141	180	1.54e0	SMART
WD40	184	255	2.45e-8	SMART
WD40	280	312	1.42e2	SMART
WD40	316	365	1.99e0	SMART
WD40	368	408	5.15e-2	SMART
WD40	415	455	8.49e-3	SMART
WD40	460	511	8.84e1	SMART
WD40	529	564	4.28e0	SMART
WD40	567	613	2.24e-2	SMART
WD40	628	668	2.2e-10	SMART
WD40	671	711	2.31e-4	SMART
low complexity region	731	754	N/A	INTRINSIC
low complexity region	788	804	N/A	INTRINSIC
low complexity region	813	844	N/A	INTRINSIC
low complexity region	1064	1084	N/A	INTRINSIC
low complexity region	1117	1132	N/A	INTRINSIC

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.3%
20x: 92.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcd2	G	T	15: 91,047,305 (GRCm39)	R583S	probably benign	Het
Ago2	A	T	15: 72,993,029 (GRCm39)	F492Y	probably damaging	Het
Ano4	T	A	10: 88,816,878 (GRCm39)	D610V	probably damaging	Het
Atp6v0d2	A	G	4: 19,922,366 (GRCm39)		probably null	Het
Atxn7	T	G	14: 14,089,419 (GRCm38)	S312A	probably benign	Het
Azgp1	A	G	5: 137,983,493 (GRCm39)	Y56C	probably damaging	Het
Bcan	A	G	3: 87,900,415 (GRCm39)	V606A	possibly damaging	Het
Btnl9	T	A	11: 49,066,617 (GRCm39)	I335F	probably benign	Het
Ccdc63	T	C	5: 122,267,940 (GRCm39)	R9G	probably damaging	Het
Cdyl	T	A	13: 36,056,619 (GRCm39)	L534*	probably null	Het
Celf2	T	C	2: 6,554,744 (GRCm39)	E445G	probably damaging	Het
Cfap97d1	T	A	11: 101,879,302 (GRCm39)	Y25N	possibly damaging	Het
Cimap3	T	A	3: 105,921,866 (GRCm39)	Q19L	possibly damaging	Het
Dock4	A	G	12: 40,844,597 (GRCm39)	I1135V	possibly damaging	Het
Edc3	A	G	9: 57,634,598 (GRCm39)	D205G	probably damaging	Het
Emilin1	C	T	5: 31,075,082 (GRCm39)	P441L	possibly damaging	Het
Fancl	T	G	11: 26,409,709 (GRCm39)	S188R	probably benign	Het
Fbn2	T	A	18: 58,186,048 (GRCm39)	K1767*	probably null	Het
Glrb	A	T	3: 80,769,264 (GRCm39)	H154Q	probably damaging	Het
Gm19965	C	T	1: 116,748,633 (GRCm39)	R105*	probably null	Het
Grhpr	C	A	4: 44,988,950 (GRCm39)	Y202*	probably null	Het
Herc2	A	G	7: 55,834,080 (GRCm39)	E3095G	probably damaging	Het
Il22ra2	A	T	10: 19,502,447 (GRCm39)	N89Y	probably damaging	Het
Itgb6	T	C	2: 60,483,625 (GRCm39)	D261G	probably benign	Het
Jmjd7	C	T	2: 119,860,589 (GRCm39)	L39F	probably damaging	Het
Kif1a	T	A	1: 92,993,871 (GRCm39)	I360F	probably damaging	Het
Kmt2d	T	C	15: 98,760,866 (GRCm39)	Q828R	unknown	Het
Marchf10	C	A	11: 105,280,741 (GRCm39)	A515S	probably benign	Het
Mios	T	A	6: 8,216,385 (GRCm39)	Y436*	probably null	Het
Mprip	C	T	11: 59,645,867 (GRCm39)	L684F	probably damaging	Het
Mybpc2	T	A	7: 44,161,894 (GRCm39)	N519Y	possibly damaging	Het
Naga	C	T	15: 82,221,669 (GRCm39)	R24Q	probably benign	Het
Nr2c1	G	A	10: 93,999,648 (GRCm39)	V103M	possibly damaging	Het
Oca2	A	G	7: 55,904,728 (GRCm39)	S65G	possibly damaging	Het
Or4k49	G	T	2: 111,495,099 (GRCm39)	S176I	probably damaging	Het
Or52ab7	A	G	7: 102,977,854 (GRCm39)	I54V	probably benign	Het
Phyhipl	A	T	10: 70,434,855 (GRCm39)	I28N	probably benign	Het
Pik3cb	C	A	9: 98,983,342 (GRCm39)	E89*	probably null	Het
Plekhm2	A	T	4: 141,361,658 (GRCm39)	S262T	probably benign	Het
Ppm1a	T	A	12: 72,840,481 (GRCm39)		probably null	Het
Relt	T	C	7: 100,499,401 (GRCm39)	I173V	probably damaging	Het
Rfx7	T	A	9: 72,526,919 (GRCm39)	S1370T	possibly damaging	Het
Rps7	G	A	12: 28,684,258 (GRCm39)	R81C	probably benign	Het
Saa3	T	C	7: 46,361,550 (GRCm39)	*123W	probably null	Het
Serpina3b	C	A	12: 104,104,896 (GRCm39)	H357Q	probably damaging	Het
Slc9c1	T	A	16: 45,378,644 (GRCm39)	N493K	probably benign	Het
Spata31	T	C	13: 65,070,197 (GRCm39)	Y782H	probably benign	Het
Tfap2a	T	C	13: 40,878,646 (GRCm39)	D166G	probably damaging	Het
Thada	A	T	17: 84,771,835 (GRCm39)	M9K	probably benign	Het
Tmem269	A	T	4: 119,068,070 (GRCm39)		probably null	Het
Tnxb	C	A	17: 34,922,863 (GRCm39)	P2482Q	probably damaging	Het
Vit	T	C	17: 78,912,940 (GRCm39)	V291A	possibly damaging	Het
Zfp930	G	T	8: 69,679,046 (GRCm39)	A18S	possibly damaging	Het
Zup1	A	T	10: 33,819,714 (GRCm39)	V200D	probably damaging	Het

Other mutations in Cnot8

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01639:Cnot8	APN	11	58,002,188 (GRCm39)	missense	probably damaging	1.00
IGL01774:Cnot8	APN	11	58,006,133 (GRCm39)	missense	probably benign	0.01
IGL02877:Cnot8	APN	11	58,002,228 (GRCm39)	missense	probably benign	0.01
straws	UTSW	11	58,004,891 (GRCm39)	missense	probably damaging	1.00
R0465:Cnot8	UTSW	11	58,004,886 (GRCm39)	missense	probably damaging	0.99
R2418:Cnot8	UTSW	11	58,006,136 (GRCm39)	missense	probably damaging	1.00
R2419:Cnot8	UTSW	11	58,006,136 (GRCm39)	missense	probably damaging	1.00
R5199:Cnot8	UTSW	11	58,006,100 (GRCm39)	nonsense	probably null
R5257:Cnot8	UTSW	11	58,008,348 (GRCm39)	missense	possibly damaging	0.94
R5317:Cnot8	UTSW	11	58,004,029 (GRCm39)	missense	probably damaging	1.00
R5351:Cnot8	UTSW	11	58,006,147 (GRCm39)	missense	probably damaging	1.00
R5702:Cnot8	UTSW	11	58,004,873 (GRCm39)	missense	possibly damaging	0.71
R6106:Cnot8	UTSW	11	58,004,816 (GRCm39)	missense	probably damaging	0.96
R6261:Cnot8	UTSW	11	58,004,877 (GRCm39)	missense	probably damaging	1.00
R6419:Cnot8	UTSW	11	58,004,891 (GRCm39)	missense	probably damaging	1.00
R6947:Cnot8	UTSW	11	58,008,331 (GRCm39)	missense	probably benign	0.03
R7070:Cnot8	UTSW	11	58,008,278 (GRCm39)	missense	probably benign	0.00
R7888:Cnot8	UTSW	11	58,002,137 (GRCm39)	missense	probably benign
Z1176:Cnot8	UTSW	11	58,003,916 (GRCm39)	missense	probably benign	0.05

Predicted Primers

PCR Primer
(F):5'- CGGGATGTGTACAATGGAGC -3'
(R):5'- TTCAGAGCAAACCCCTCCTG -3'

Sequencing Primer
(F):5'- ACTGTCCAGTGTGCTGTGTCAG -3'
(R):5'- CTCCTGGATCTAAAATAAAGGCATC -3'

Posted On

2014-06-23