Mutagenetix > Incidental Mutation

Incidental Mutation 'R1804:Ipo4'

203407

Institutional Source

Beutler Lab

Gene Symbol

Ipo4

Ensembl Gene

ENSMUSG00000002319

Gene Name

importin 4

Synonyms

8430408O15Rik

MMRRC Submission

039834-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.169) question?

Stock #

R1804 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

55862857-55873321 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 55866913 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 668 (N668K)

Ref Sequence

ENSEMBL: ENSMUSP00000123692 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000002395] [ENSMUST00000047131] [ENSMUST00000125133] [ENSMUST00000135221] [ENSMUST00000141499] [ENSMUST00000148351]

AlphaFold

Q8VI75

Predicted Effect

probably benign
Transcript: ENSMUST00000002395

SMART Domains

Protein: ENSMUSP00000002395
Gene: ENSMUSG00000002324

Domain	Start	End	E-Value	Type
Pfam:Rad21_Rec8_N	1	117	2.2e-26	PFAM
low complexity region	235	249	N/A	INTRINSIC
low complexity region	329	347	N/A	INTRINSIC
coiled coil region	423	458	N/A	INTRINSIC
low complexity region	497	521	N/A	INTRINSIC
Pfam:Rad21_Rec8	536	590	9.2e-23	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000047131
AA Change: N668K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000036555
Gene: ENSMUSG00000002319
AA Change: N668K

Domain	Start	End	E-Value	Type
IBN_N	24	90	4.4e-7	SMART
Blast:IBN_N	101	170	4e-20	BLAST
Blast:IBN_N	224	293	4e-31	BLAST
low complexity region	307	321	N/A	INTRINSIC
Pfam:HEAT	395	425	7.7e-7	PFAM
Blast:ARM	465	499	8e-13	BLAST
low complexity region	500	511	N/A	INTRINSIC
low complexity region	636	660	N/A	INTRINSIC
low complexity region	733	743	N/A	INTRINSIC
low complexity region	811	830	N/A	INTRINSIC
low complexity region	851	864	N/A	INTRINSIC
Pfam:HEAT	901	931	1.9e-5	PFAM
Pfam:HEAT_EZ	914	969	2.3e-9	PFAM
low complexity region	1043	1053	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000125133

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126064

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127773

Predicted Effect

probably damaging
Transcript: ENSMUST00000135221
AA Change: N668K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000123692
Gene: ENSMUSG00000002319
AA Change: N668K

Domain	Start	End	E-Value	Type
IBN_N	24	90	4.4e-7	SMART
Blast:IBN_N	101	170	3e-20	BLAST
Blast:IBN_N	224	293	2e-31	BLAST
low complexity region	307	321	N/A	INTRINSIC
Pfam:HEAT	395	425	7.4e-7	PFAM
Blast:ARM	465	499	7e-13	BLAST
low complexity region	500	511	N/A	INTRINSIC
low complexity region	636	660	N/A	INTRINSIC
low complexity region	733	743	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141425

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155193

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150951

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146528

Predicted Effect

probably benign
Transcript: ENSMUST00000141499

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148942

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155464

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141848

Predicted Effect

probably benign
Transcript: ENSMUST00000156420

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000227922

Predicted Effect

probably benign
Transcript: ENSMUST00000148351

SMART Domains

Protein: ENSMUSP00000117543
Gene: ENSMUSG00000002319

Domain	Start	End	E-Value	Type
IBN_N	24	90	4.4e-7	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000228754

Meta Mutation Damage Score

0.2137

Coding Region Coverage

1x: 97.4%
3x: 96.7%
10x: 94.5%
20x: 89.8%

Validation Efficiency

96% (77/80)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700056E22Rik	A	G	1: 183,765,400 (GRCm39)	Y220H	probably benign	Het
4930579C12Rik	T	C	9: 89,034,113 (GRCm39)		noncoding transcript	Het
Abcc8	T	C	7: 45,769,903 (GRCm39)	S871G	probably benign	Het
Acly	T	C	11: 100,406,731 (GRCm39)	Y288C	probably damaging	Het
Adgrb1	T	A	15: 74,401,389 (GRCm39)	D128E	probably damaging	Het
Alms1	C	T	6: 85,598,257 (GRCm39)	Q1497*	probably null	Het
Bltp2	A	G	11: 78,164,295 (GRCm39)	H1165R	probably damaging	Het
Cacna1c	G	A	6: 118,664,007 (GRCm39)	T688M	probably damaging	Het
Ccdc7a	A	T	8: 129,715,247 (GRCm39)	L279*	probably null	Het
Cep135	A	G	5: 76,784,779 (GRCm39)	E958G	probably benign	Het
Clec4n	G	T	6: 123,206,981 (GRCm39)	V2L	possibly damaging	Het
Col28a1	C	T	6: 8,164,612 (GRCm39)		probably null	Het
Dcaf5	A	G	12: 80,386,603 (GRCm39)	S508P	probably benign	Het
Dlgap2	C	A	8: 14,777,809 (GRCm39)	N351K	possibly damaging	Het
Dnah8	T	A	17: 30,927,381 (GRCm39)	Y1346N	probably benign	Het
Dqx1	T	C	6: 83,037,303 (GRCm39)	V322A	probably damaging	Het
Ebf3	A	C	7: 136,802,250 (GRCm39)	L412V	possibly damaging	Het
Epha5	T	C	5: 84,479,674 (GRCm39)	N110S	probably benign	Het
Fcgbp	T	C	7: 27,785,564 (GRCm39)	C334R	probably benign	Het
Glp1r	T	A	17: 31,149,687 (GRCm39)		probably null	Het
Gm4952	G	T	19: 12,595,784 (GRCm39)	R58L	probably damaging	Het
Gm7579	G	A	7: 141,765,675 (GRCm39)	C27Y	unknown	Het
Golm1	T	A	13: 59,790,203 (GRCm39)		probably null	Het
Gucy2g	T	A	19: 55,198,741 (GRCm39)	I801F	probably benign	Het
H2-D1	T	C	17: 35,482,528 (GRCm39)	Y83H	probably damaging	Het
Homez	A	T	14: 55,094,598 (GRCm39)	I19N	probably damaging	Het
Hoxa5	T	C	6: 52,179,628 (GRCm39)	K249R	probably damaging	Het
Hsd17b4	A	T	18: 50,311,051 (GRCm39)	N550Y	probably damaging	Het
Kcnh8	GAGACCAACGAGCAGCTGATGCTTCAGA	GAGA	17: 53,032,934 (GRCm39)	74	probably benign	Het
Klb	A	G	5: 65,537,196 (GRCm39)	D842G	probably damaging	Het
Minar1	T	A	9: 89,485,152 (GRCm39)	M82L	possibly damaging	Het
Mmp21	G	T	7: 133,280,611 (GRCm39)	P120T	probably benign	Het
Mroh7	T	A	4: 106,551,589 (GRCm39)	I918F	possibly damaging	Het
Muc5b	A	G	7: 141,417,517 (GRCm39)	T3488A	possibly damaging	Het
Npc1	C	T	18: 12,356,145 (GRCm39)	C42Y	probably damaging	Het
Ogdh	A	G	11: 6,288,565 (GRCm39)	Y214C	probably damaging	Het
Or2q1	G	A	6: 42,795,155 (GRCm39)	C250Y	possibly damaging	Het
Or4k15c	A	T	14: 50,321,359 (GRCm39)	W260R	probably damaging	Het
Or4k35	T	C	2: 111,100,275 (GRCm39)	M146V	probably benign	Het
Or5al1	G	T	2: 85,990,417 (GRCm39)	T99N	probably benign	Het
Or8d23	A	G	9: 38,841,946 (GRCm39)	T160A	possibly damaging	Het
Phtf1	A	G	3: 103,894,883 (GRCm39)		probably benign	Het
Plb1	A	G	5: 32,511,041 (GRCm39)	N1302S	possibly damaging	Het
Prex2	A	G	1: 11,202,566 (GRCm39)	K492E	probably damaging	Het
Prkaa1	A	G	15: 5,208,259 (GRCm39)	D509G	probably benign	Het
Rims2	C	T	15: 39,300,439 (GRCm39)	Q57*	probably null	Het
Rnf40	T	C	7: 127,195,120 (GRCm39)	V411A	possibly damaging	Het
Rraga	A	G	4: 86,494,681 (GRCm39)	I176V	probably damaging	Het
Rrm2	T	C	12: 24,758,611 (GRCm39)	I51T	probably benign	Het
Serpina3a	T	A	12: 104,084,675 (GRCm39)		probably benign	Het
Skint7	T	C	4: 111,839,209 (GRCm39)	W168R	probably damaging	Het
Slc27a4	A	G	2: 29,701,279 (GRCm39)	M357V	probably benign	Het
Slc4a3	A	G	1: 75,528,361 (GRCm39)	H452R	probably damaging	Het
Smc1b	A	T	15: 85,011,991 (GRCm39)	I127K	possibly damaging	Het
Snap91	T	A	9: 86,665,470 (GRCm39)	M383L	probably benign	Het
Taf6l	A	T	19: 8,750,998 (GRCm39)	L52Q	probably damaging	Het
Tas1r3	G	A	4: 155,944,927 (GRCm39)	R765C	probably damaging	Het
Tas2r124	A	G	6: 132,732,488 (GRCm39)	I266V	probably benign	Het
Tesk2	T	C	4: 116,657,818 (GRCm39)		probably benign	Het
Tmem131l	T	G	3: 83,817,786 (GRCm39)	Q1237P	possibly damaging	Het
Tmem67	A	G	4: 12,045,789 (GRCm39)		probably null	Het
Tnfaip8	T	A	18: 50,223,728 (GRCm39)	C179S	probably damaging	Het
Ush2a	G	A	1: 188,365,926 (GRCm39)		probably null	Het
Vps13b	A	T	15: 35,917,283 (GRCm39)	E3709V	probably damaging	Het
Wdr7	A	T	18: 63,998,511 (GRCm39)	S1153C	probably damaging	Het
Zc2hc1b	A	C	10: 13,047,012 (GRCm39)		probably benign	Het
Zfp438	A	G	18: 5,213,689 (GRCm39)	I423T	probably damaging	Het
Zfp592	C	A	7: 80,673,443 (GRCm39)	P136T	probably damaging	Het
Zfp783	T	A	6: 47,922,819 (GRCm39)		noncoding transcript	Het
Zfp804b	A	T	5: 6,821,756 (GRCm39)	S400T	possibly damaging	Het

Other mutations in Ipo4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0268:Ipo4	UTSW	14	55,863,399 (GRCm39)	missense	possibly damaging	0.92
R0277:Ipo4	UTSW	14	55,869,572 (GRCm39)	missense	probably benign	0.03
R0344:Ipo4	UTSW	14	55,863,399 (GRCm39)	missense	possibly damaging	0.92
R0467:Ipo4	UTSW	14	55,872,983 (GRCm39)	start codon destroyed	probably null
R1167:Ipo4	UTSW	14	55,872,477 (GRCm39)	missense	probably damaging	1.00
R1217:Ipo4	UTSW	14	55,871,816 (GRCm39)	missense	probably damaging	0.98
R2270:Ipo4	UTSW	14	55,871,557 (GRCm39)	missense	probably damaging	1.00
R3551:Ipo4	UTSW	14	55,870,560 (GRCm39)	missense	probably benign	0.10
R4561:Ipo4	UTSW	14	55,867,546 (GRCm39)	splice site	probably benign
R4801:Ipo4	UTSW	14	55,868,671 (GRCm39)	missense	probably damaging	1.00
R4802:Ipo4	UTSW	14	55,868,671 (GRCm39)	missense	probably damaging	1.00
R4804:Ipo4	UTSW	14	55,868,313 (GRCm39)	missense	possibly damaging	0.80
R5384:Ipo4	UTSW	14	55,863,653 (GRCm39)	missense	probably benign	0.28
R5493:Ipo4	UTSW	14	55,868,327 (GRCm39)	missense	probably benign	0.00
R5527:Ipo4	UTSW	14	55,869,507 (GRCm39)	splice site	probably null
R5631:Ipo4	UTSW	14	55,870,838 (GRCm39)	missense	probably benign	0.08
R5631:Ipo4	UTSW	14	55,869,526 (GRCm39)	missense	probably damaging	1.00
R5788:Ipo4	UTSW	14	55,866,277 (GRCm39)	missense	probably benign	0.02
R5929:Ipo4	UTSW	14	55,868,646 (GRCm39)	missense	probably benign	0.03
R6018:Ipo4	UTSW	14	55,863,609 (GRCm39)	critical splice donor site	probably null
R6031:Ipo4	UTSW	14	55,869,596 (GRCm39)	missense	probably damaging	1.00
R6031:Ipo4	UTSW	14	55,869,596 (GRCm39)	missense	probably damaging	1.00
R6707:Ipo4	UTSW	14	55,866,361 (GRCm39)	missense	possibly damaging	0.82
R7344:Ipo4	UTSW	14	55,872,988 (GRCm39)	missense	probably benign	0.00
R7345:Ipo4	UTSW	14	55,872,988 (GRCm39)	missense	probably benign	0.00
R7702:Ipo4	UTSW	14	55,869,787 (GRCm39)	missense	probably damaging	1.00
R9028:Ipo4	UTSW	14	55,866,408 (GRCm39)	missense	probably damaging	1.00
R9197:Ipo4	UTSW	14	55,870,840 (GRCm39)	missense	probably damaging	1.00
R9202:Ipo4	UTSW	14	55,868,597 (GRCm39)	critical splice donor site	probably null
R9244:Ipo4	UTSW	14	55,871,799 (GRCm39)	missense	probably damaging	1.00
R9547:Ipo4	UTSW	14	55,870,789 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- CTTCATCGAAGGTGGCATCC -3'
(R):5'- TAGGAGGGGTGCTCTTCTAC -3'

Sequencing Primer
(F):5'- CATCGAAGGTGGCATCCATGAATG -3'
(R):5'- GCCTTTAATTCTAGCACTCAGGAGG -3'

Posted On

2014-06-23