Mutagenetix > Incidental Mutation

Incidental Mutation 'R0110:Pdzrn3'

20373

Institutional Source

Beutler Lab

Gene Symbol

Pdzrn3

Ensembl Gene

ENSMUSG00000035357

Gene Name

PDZ domain containing RING finger 3

Synonyms

1110020C07Rik, semaphorin cytoplasmic domain-associated protein 3A, LNX3, Semcap3

MMRRC Submission

038396-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.780) question?

Stock #

R0110 (G1)

Quality Score

225

Status

Validated (trace)

Chromosome

Chromosomal Location

101126570-101354858 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 101128014 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 884 (I884N)

Ref Sequence

ENSEMBL: ENSMUSP00000075376 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000075994]

AlphaFold

Q69ZS0

Predicted Effect

probably damaging
Transcript: ENSMUST00000075994
AA Change: I884N

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000075376
Gene: ENSMUSG00000035357
AA Change: I884N

Domain	Start	End	E-Value	Type
RING	18	55	3.93e-3	SMART
low complexity region	198	214	N/A	INTRINSIC
PDZ	257	339	3.38e-21	SMART
PDZ	429	504	3.86e-16	SMART
low complexity region	512	526	N/A	INTRINSIC
low complexity region	660	671	N/A	INTRINSIC
low complexity region	1020	1029	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203474

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204522

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205008

Meta Mutation Damage Score

0.1099

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.3%
20x: 89.0%

Validation Efficiency

98% (105/107)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the LNX (Ligand of Numb Protein-X) family of RING-type ubiquitin E3 ligases. This protein may function in vascular morphogenesis and the differentiation of adipocytes, osteoblasts and myoblasts. This protein may be targeted for degradation by the human papilloma virus E6 protein. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]

Allele List at MGI

Other mutations in this stock

Total: 99 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930486L24Rik	A	T	13: 61,001,320 (GRCm39)		probably benign	Het
Abcg3	A	G	5: 105,125,482 (GRCm39)	I67T	probably damaging	Het
Adam10	T	A	9: 70,655,530 (GRCm39)	W333R	probably damaging	Het
Ahnak	C	T	19: 8,995,596 (GRCm39)	R5627*	probably null	Het
AI606181	A	C	19: 41,582,170 (GRCm39)	K113N	unknown	Het
Alms1	A	T	6: 85,597,351 (GRCm39)	R1195*	probably null	Het
Ankrd11	T	C	8: 123,618,914 (GRCm39)	D1646G	possibly damaging	Het
Ap2m1	T	A	16: 20,360,990 (GRCm39)	I334N	possibly damaging	Het
Arpc1b	T	A	5: 145,064,525 (GRCm39)	W361R	probably damaging	Het
Baiap2l1	T	C	5: 144,212,701 (GRCm39)	Y438C	probably damaging	Het
Brd8dc	A	T	18: 34,729,204 (GRCm39)	D42E	probably damaging	Het
Ccdc110	T	A	8: 46,388,194 (GRCm39)	N50K	probably benign	Het
Ccdc168	C	A	1: 44,098,384 (GRCm39)	V905F	probably benign	Het
Cdhr1	T	C	14: 36,802,633 (GRCm39)	Y610C	probably damaging	Het
Celsr3	G	A	9: 108,704,204 (GRCm39)	C229Y	possibly damaging	Het
Clca4b	A	T	3: 144,619,112 (GRCm39)	Y676N	probably damaging	Het
Cntln	C	T	4: 85,014,994 (GRCm39)	T1095I	probably damaging	Het
Cog2	T	C	8: 125,255,797 (GRCm39)		probably null	Het
Col11a1	A	T	3: 113,899,105 (GRCm39)		probably benign	Het
Cpe	T	A	8: 65,064,501 (GRCm39)	I233F	probably damaging	Het
Dcaf11	T	C	14: 55,806,537 (GRCm39)	V446A	probably damaging	Het
Defa34	A	G	8: 22,155,988 (GRCm39)		probably null	Het
Dnah12	A	G	14: 26,520,856 (GRCm39)	R1892G	probably damaging	Het
Dock4	A	G	12: 40,671,311 (GRCm39)		probably benign	Het
Dync1h1	C	A	12: 110,606,378 (GRCm39)	Q2483K	probably benign	Het
Enpp3	A	T	10: 24,652,679 (GRCm39)	D759E	probably damaging	Het
Epyc	A	G	10: 97,485,625 (GRCm39)	T22A	probably benign	Het
Fam227b	T	A	2: 125,942,841 (GRCm39)	S319C	probably damaging	Het
Fam83a	C	A	15: 57,873,322 (GRCm39)	Q384K	probably benign	Het
Fam83b	G	T	9: 76,400,108 (GRCm39)	L332I	possibly damaging	Het
Gal3st2c	C	T	1: 93,937,219 (GRCm39)	P388L	probably benign	Het
Ggn	C	T	7: 28,870,721 (GRCm39)	P47S	probably damaging	Het
Gli3	T	G	13: 15,899,370 (GRCm39)	L919R	probably damaging	Het
Gm5134	C	A	10: 75,810,079 (GRCm39)	T120N	probably benign	Het
Gmip	C	T	8: 70,268,259 (GRCm39)		probably benign	Het
Gpr39	C	T	1: 125,605,237 (GRCm39)	T55M	probably damaging	Het
Grk4	A	G	5: 34,873,557 (GRCm39)	T208A	probably damaging	Het
Gsdme	C	A	6: 50,223,107 (GRCm39)		probably benign	Het
Gucy2e	T	C	11: 69,126,402 (GRCm39)	D326G	probably benign	Het
Hadhb	T	C	5: 30,374,483 (GRCm39)		probably benign	Het
Hectd4	T	A	5: 121,419,959 (GRCm39)	Y635N	possibly damaging	Het
Hectd4	G	A	5: 121,443,736 (GRCm39)	E1319K	possibly damaging	Het
Ikbkb	A	T	8: 23,161,651 (GRCm39)	C412*	probably null	Het
Itpa	A	T	2: 130,521,338 (GRCm39)		probably benign	Het
Klhl10	A	G	11: 100,347,758 (GRCm39)	T605A	probably benign	Het
Krt74	T	C	15: 101,671,751 (GRCm39)		noncoding transcript	Het
Krt81	C	A	15: 101,361,508 (GRCm39)	R24L	possibly damaging	Het
Lap3	T	C	5: 45,652,632 (GRCm39)		probably benign	Het
Lrrc10	T	A	10: 116,881,695 (GRCm39)	L123Q	probably damaging	Het
Map3k6	T	C	4: 132,971,105 (GRCm39)	L273P	probably damaging	Het
Mbl1	A	G	14: 40,880,706 (GRCm39)	N198S	probably damaging	Het
Mcf2l	A	G	8: 13,047,337 (GRCm39)	D233G	probably damaging	Het
Mdga2	T	C	12: 66,517,700 (GRCm39)	K45E	possibly damaging	Het
Mdn1	A	G	4: 32,738,619 (GRCm39)	N3524S	probably benign	Het
Mrc1	T	A	2: 14,243,353 (GRCm39)		probably benign	Het
Msto1	A	G	3: 88,818,848 (GRCm39)	L269P	probably benign	Het
Mtcl1	C	T	17: 66,665,109 (GRCm39)	E1149K	possibly damaging	Het
Naca	C	T	10: 127,880,659 (GRCm39)	A1897V	probably benign	Het
Ncapg	T	C	5: 45,850,489 (GRCm39)		probably benign	Het
Neb	A	T	2: 52,180,755 (GRCm39)		probably benign	Het
Or5p5	T	C	7: 107,413,895 (GRCm39)	Y35H	probably damaging	Het
Or8b12i	T	C	9: 20,082,561 (GRCm39)	Y102C	probably benign	Het
Or8g27	G	A	9: 39,129,024 (GRCm39)	V124I	possibly damaging	Het
Parp2	T	A	14: 51,057,130 (GRCm39)	Y361N	probably damaging	Het
Parp3	A	G	9: 106,348,995 (GRCm39)	F466L	possibly damaging	Het
Pcdh15	A	T	10: 74,126,808 (GRCm39)	N296Y	probably damaging	Het
Pcf11	G	A	7: 92,307,039 (GRCm39)	P1043L	probably damaging	Het
Phf24	G	T	4: 42,933,761 (GRCm39)	V48L	possibly damaging	Het
Pla2g4a	T	A	1: 149,716,398 (GRCm39)	M688L	possibly damaging	Het
Plcl2	T	C	17: 50,915,010 (GRCm39)	L673P	probably damaging	Het
Ppp1r3c	A	T	19: 36,711,617 (GRCm39)	F51Y	possibly damaging	Het
Prmt1	A	G	7: 44,628,225 (GRCm39)		probably benign	Het
Proc	G	A	18: 32,258,171 (GRCm39)	T258I	probably benign	Het
Prom2	T	G	2: 127,373,033 (GRCm39)	S679R	possibly damaging	Het
Psen2	T	C	1: 180,066,479 (GRCm39)	T153A	probably damaging	Het
Rem2	T	C	14: 54,713,754 (GRCm39)		probably benign	Het
Rin2	A	G	2: 145,702,953 (GRCm39)	K550E	probably benign	Het
Rtn4	T	A	11: 29,683,849 (GRCm39)		probably benign	Het
Semp2l1	T	A	1: 32,584,956 (GRCm39)	N318I	possibly damaging	Het
Ssh1	A	T	5: 114,084,766 (GRCm39)	D448E	probably benign	Het
Ssmem1	A	T	6: 30,519,547 (GRCm39)		probably null	Het
Stam2	A	T	2: 52,609,998 (GRCm39)		probably benign	Het
Syne1	A	G	10: 5,317,600 (GRCm39)	L498P	probably damaging	Het
Syne2	AGAGTGAG	AGAGTGAGTGAG	12: 76,144,734 (GRCm39)		probably null	Het
Taf6l	G	T	19: 8,755,885 (GRCm39)	H254Q	probably benign	Het
Tas2r123	T	C	6: 132,824,295 (GRCm39)	V64A	probably benign	Het
Tnnc1	A	G	14: 30,933,365 (GRCm39)	D149G	probably damaging	Het
Tpp2	A	G	1: 44,038,853 (GRCm39)	D1133G	probably damaging	Het
Tpp2	T	A	1: 44,017,664 (GRCm39)	V756E	probably benign	Het
Traf3ip3	T	A	1: 192,860,539 (GRCm39)		probably null	Het
Tsen15	A	G	1: 152,247,548 (GRCm39)	V148A	probably damaging	Het
Ttn	T	A	2: 76,694,672 (GRCm39)		probably benign	Het
Ube2u	A	G	4: 100,343,870 (GRCm39)	I90V	probably benign	Het
Unc79	T	A	12: 103,045,329 (GRCm39)		probably null	Het
Usp47	T	C	7: 111,655,787 (GRCm39)	S155P	possibly damaging	Het
Wdr41	T	C	13: 95,154,619 (GRCm39)		probably benign	Het
Zfp217	C	T	2: 169,957,382 (GRCm39)	A539T	probably benign	Het
Zfp423	A	G	8: 88,508,887 (GRCm39)	S486P	possibly damaging	Het
Zfp628	A	T	7: 4,922,732 (GRCm39)	Q318L	probably benign	Het

Other mutations in Pdzrn3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00984:Pdzrn3	APN	6	101,331,447 (GRCm39)	missense	probably benign	0.01
IGL01511:Pdzrn3	APN	6	101,130,217 (GRCm39)	missense	possibly damaging	0.66
IGL01554:Pdzrn3	APN	6	101,127,502 (GRCm39)	missense	probably damaging	1.00
IGL02450:Pdzrn3	APN	6	101,331,461 (GRCm39)	missense	probably damaging	1.00
IGL02505:Pdzrn3	APN	6	101,128,899 (GRCm39)	missense	possibly damaging	0.94
IGL03061:Pdzrn3	APN	6	101,128,816 (GRCm39)	missense	probably damaging	1.00
IGL03210:Pdzrn3	APN	6	101,133,913 (GRCm39)	missense	possibly damaging	0.95
gefilte	UTSW	6	101,131,153 (GRCm39)	critical splice donor site	probably null
implevit_bonis	UTSW	6	101,127,983 (GRCm39)	missense	probably benign	0.15
predisposition	UTSW	6	101,128,014 (GRCm39)	missense	probably damaging	1.00
tendency	UTSW	6	101,128,389 (GRCm39)	missense	probably damaging	1.00
PIT4581001:Pdzrn3	UTSW	6	101,128,464 (GRCm39)	missense	probably benign	0.00
R0469:Pdzrn3	UTSW	6	101,128,014 (GRCm39)	missense	probably damaging	1.00
R0496:Pdzrn3	UTSW	6	101,127,531 (GRCm39)	missense	possibly damaging	0.94
R0510:Pdzrn3	UTSW	6	101,128,014 (GRCm39)	missense	probably damaging	1.00
R0883:Pdzrn3	UTSW	6	101,132,903 (GRCm39)	splice site	probably null
R1171:Pdzrn3	UTSW	6	101,127,838 (GRCm39)	missense	probably damaging	1.00
R1471:Pdzrn3	UTSW	6	101,128,473 (GRCm39)	missense	possibly damaging	0.77
R1496:Pdzrn3	UTSW	6	101,127,930 (GRCm39)	missense	probably benign	0.00
R1596:Pdzrn3	UTSW	6	101,127,966 (GRCm39)	missense	probably benign	0.03
R2033:Pdzrn3	UTSW	6	101,127,915 (GRCm39)	missense	probably damaging	1.00
R2068:Pdzrn3	UTSW	6	101,127,660 (GRCm39)	missense	probably damaging	1.00
R2084:Pdzrn3	UTSW	6	101,131,256 (GRCm39)	missense	probably benign	0.35
R2432:Pdzrn3	UTSW	6	101,127,752 (GRCm39)	missense	probably damaging	1.00
R3727:Pdzrn3	UTSW	6	101,133,906 (GRCm39)	missense	probably damaging	0.98
R3861:Pdzrn3	UTSW	6	101,149,332 (GRCm39)	missense	possibly damaging	0.95
R4616:Pdzrn3	UTSW	6	101,128,970 (GRCm39)	missense	probably damaging	0.99
R4967:Pdzrn3	UTSW	6	101,128,551 (GRCm39)	missense	probably damaging	1.00
R5224:Pdzrn3	UTSW	6	101,130,272 (GRCm39)	missense	probably damaging	1.00
R5226:Pdzrn3	UTSW	6	101,130,272 (GRCm39)	missense	probably damaging	1.00
R5227:Pdzrn3	UTSW	6	101,130,272 (GRCm39)	missense	probably damaging	1.00
R5230:Pdzrn3	UTSW	6	101,130,272 (GRCm39)	missense	probably damaging	1.00
R5320:Pdzrn3	UTSW	6	101,128,064 (GRCm39)	missense	probably damaging	1.00
R5414:Pdzrn3	UTSW	6	101,130,272 (GRCm39)	missense	probably damaging	1.00
R5686:Pdzrn3	UTSW	6	101,128,389 (GRCm39)	missense	probably damaging	1.00
R5772:Pdzrn3	UTSW	6	101,149,275 (GRCm39)	missense	probably benign	0.00
R6026:Pdzrn3	UTSW	6	101,339,105 (GRCm39)	missense	probably benign	0.40
R6213:Pdzrn3	UTSW	6	101,354,805 (GRCm39)	missense	probably damaging	1.00
R6518:Pdzrn3	UTSW	6	101,127,475 (GRCm39)	makesense	probably null
R6657:Pdzrn3	UTSW	6	101,127,983 (GRCm39)	missense	probably benign	0.15
R6951:Pdzrn3	UTSW	6	101,131,153 (GRCm39)	critical splice donor site	probably null
R7055:Pdzrn3	UTSW	6	101,128,735 (GRCm39)	nonsense	probably null
R7290:Pdzrn3	UTSW	6	101,128,206 (GRCm39)	missense	probably benign
R7608:Pdzrn3	UTSW	6	101,128,713 (GRCm39)	missense	probably damaging	1.00
R7834:Pdzrn3	UTSW	6	101,128,156 (GRCm39)	missense	probably damaging	0.97
R8199:Pdzrn3	UTSW	6	101,128,918 (GRCm39)	missense	probably damaging	1.00
R8338:Pdzrn3	UTSW	6	101,127,783 (GRCm39)	missense	probably benign	0.00
R8734:Pdzrn3	UTSW	6	101,128,567 (GRCm39)	missense	probably damaging	0.98
R8783:Pdzrn3	UTSW	6	101,132,841 (GRCm39)	missense	probably damaging	1.00
R9082:Pdzrn3	UTSW	6	101,146,094 (GRCm39)	critical splice donor site	probably null
R9378:Pdzrn3	UTSW	6	101,127,772 (GRCm39)	missense	probably damaging	1.00
R9499:Pdzrn3	UTSW	6	101,127,855 (GRCm39)	missense	probably damaging	1.00
R9542:Pdzrn3	UTSW	6	101,149,235 (GRCm39)	missense	probably benign	0.00
R9551:Pdzrn3	UTSW	6	101,127,855 (GRCm39)	missense	probably damaging	1.00
R9639:Pdzrn3	UTSW	6	101,146,172 (GRCm39)	missense	probably benign	0.00
R9743:Pdzrn3	UTSW	6	101,354,678 (GRCm39)	missense	probably damaging	1.00
Z1176:Pdzrn3	UTSW	6	101,128,960 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCCAGCCTGCTCTGCATCATAAAC -3'
(R):5'- TCACTGAGGACCCTGAAGTAAGCAC -3'

Sequencing Primer
(F):5'- CACCAGATGTTGCTTGCG -3'
(R):5'- CCTAGTGCCAAAGAGCTGGAC -3'

Posted On

2013-04-11