Incidental Mutation 'R1862:Etfbkmt'
ID204024
Institutional Source Beutler Lab
Gene Symbol Etfbkmt
Ensembl Gene ENSMUSG00000039958
Gene Nameelectron transfer flavoprotein beta subunit lysine methyltransferase
Synonyms4833442J19Rik, Mettl20
MMRRC Submission 039885-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R1862 (G1)
Quality Score225
Status Not validated
Chromosome6
Chromosomal Location149139849-149151171 bp(+) (GRCm38)
Type of Mutationstart codon destroyed
DNA Base Change (assembly) T to A at 149144151 bp
ZygosityHeterozygous
Amino Acid Change Methionine to Lysine at position 1 (M1K)
Ref Sequence ENSEMBL: ENSMUSP00000107173 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000047531] [ENSMUST00000111547] [ENSMUST00000111548] [ENSMUST00000111551] [ENSMUST00000126406] [ENSMUST00000134306] [ENSMUST00000147934] [ENSMUST00000166416] [ENSMUST00000179873]
Predicted Effect probably null
Transcript: ENSMUST00000047531
AA Change: M1K

PolyPhen 2 Score 0.771 (Sensitivity: 0.85; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000042102
Gene: ENSMUSG00000039958
AA Change: M1K

DomainStartEndE-ValueType
Pfam:Methyltransf_16 86 216 2.1e-10 PFAM
Pfam:MTS 91 189 1e-7 PFAM
Pfam:PrmA 94 180 1.6e-12 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000111547
AA Change: M1K

PolyPhen 2 Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)
Predicted Effect probably null
Transcript: ENSMUST00000111548
AA Change: M1K

PolyPhen 2 Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)
Predicted Effect probably null
Transcript: ENSMUST00000111551
AA Change: M1K

PolyPhen 2 Score 0.771 (Sensitivity: 0.85; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000107176
Gene: ENSMUSG00000039958
AA Change: M1K

DomainStartEndE-ValueType
Pfam:Methyltransf_16 86 218 1.9e-10 PFAM
Pfam:MTS 91 187 1.1e-7 PFAM
Pfam:PrmA 94 180 1.5e-12 PFAM
Pfam:Methyltransf_26 109 214 4.6e-8 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000126406
AA Change: M1K

PolyPhen 2 Score 0.041 (Sensitivity: 0.94; Specificity: 0.83)
Predicted Effect probably null
Transcript: ENSMUST00000134306
AA Change: M1K

PolyPhen 2 Score 0.771 (Sensitivity: 0.85; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000118701
Gene: ENSMUSG00000039958
AA Change: M1K

DomainStartEndE-ValueType
Pfam:Methyltransf_16 85 158 1.3e-7 PFAM
Pfam:PrmA 94 159 2e-11 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000147934
SMART Domains Protein: ENSMUSP00000144830
Gene: ENSMUSG00000039958

DomainStartEndE-ValueType
SCOP:d1f3la_ 2 100 4e-3 SMART
Predicted Effect probably null
Transcript: ENSMUST00000166416
AA Change: M1K

PolyPhen 2 Score 0.771 (Sensitivity: 0.85; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000126521
Gene: ENSMUSG00000039958
AA Change: M1K

DomainStartEndE-ValueType
Pfam:Methyltransf_16 85 159 1.3e-7 PFAM
Pfam:PrmA 94 164 1.4e-11 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000179873
AA Change: M1K

PolyPhen 2 Score 0.771 (Sensitivity: 0.85; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000136167
Gene: ENSMUSG00000039958
AA Change: M1K

DomainStartEndE-ValueType
Pfam:Methyltransf_16 86 218 1.9e-10 PFAM
Pfam:MTS 91 187 1.1e-7 PFAM
Pfam:PrmA 94 180 1.5e-12 PFAM
Pfam:Methyltransf_26 109 214 4.6e-8 PFAM
Coding Region Coverage
  • 1x: 97.5%
  • 3x: 96.8%
  • 10x: 94.9%
  • 20x: 90.5%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 82 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acox2 T A 14: 8,241,416 E565D probably benign Het
Adam30 A T 3: 98,162,113 K421* probably null Het
Atp6v1b1 A G 6: 83,749,852 probably null Het
Cacna1a A T 8: 84,415,930 I96F possibly damaging Het
Card10 G A 15: 78,780,514 R747W probably damaging Het
Cdh8 T A 8: 99,190,394 D363V probably damaging Het
Cecr2 T C 6: 120,757,941 Y685H probably damaging Het
Cmklr1 T C 5: 113,614,407 T178A probably damaging Het
Col16a1 G A 4: 130,092,782 probably null Het
Col4a1 C T 8: 11,226,439 probably benign Het
Coro2a T A 4: 46,548,797 I166F possibly damaging Het
Cry2 T C 2: 92,424,566 H148R probably damaging Het
Crygd T C 1: 65,061,974 Y154C probably benign Het
Cubn T C 2: 13,308,561 Y3066C probably damaging Het
Defb15 C T 8: 21,929,986 E42K possibly damaging Het
Dnah12 A G 14: 26,697,398 D147G probably benign Het
Dnah12 A T 14: 26,709,257 Y340F probably benign Het
Dot1l G T 10: 80,783,539 R193L probably damaging Het
Dupd1 A G 14: 21,686,689 V115A probably benign Het
Esd A C 14: 74,742,074 Y119S probably damaging Het
Esp36 A G 17: 38,419,439 probably benign Het
Exph5 A G 9: 53,376,248 H1543R probably benign Het
Fam92a C T 4: 12,155,717 V306I possibly damaging Het
Fbxo16 A G 14: 65,270,803 T23A probably damaging Het
Gm11492 A G 11: 87,567,235 H145R possibly damaging Het
Gm6614 T C 6: 142,003,423 M76V possibly damaging Het
Gorasp2 C A 2: 70,679,464 H136Q probably damaging Het
Hdc T A 2: 126,597,933 I367F probably benign Het
Hmcn1 C T 1: 150,638,900 V3574M probably benign Het
Ilvbl A G 10: 78,584,124 D592G probably benign Het
Inmt G A 6: 55,174,883 A34V probably damaging Het
Ints9 A C 14: 65,026,413 H378P probably benign Het
Kcnh7 T A 2: 62,787,754 I464L possibly damaging Het
Kcnt2 T A 1: 140,425,330 V259D probably damaging Het
Lipo1 A G 19: 33,784,692 F135S probably damaging Het
Lrba T C 3: 86,773,203 probably null Het
Mapk1 T A 16: 17,026,429 S22T probably benign Het
Mbd3l2 T C 9: 18,444,921 S181P possibly damaging Het
Mgat5 C T 1: 127,459,969 P554L probably damaging Het
Mki67 T C 7: 135,699,361 T1315A probably benign Het
Mprip C T 11: 59,758,221 T917M possibly damaging Het
Mroh3 T A 1: 136,185,988 I688F probably benign Het
Myo1d A T 11: 80,663,048 Y536N probably damaging Het
Neb C T 2: 52,162,187 probably null Het
Noc2l A G 4: 156,237,708 R161G probably benign Het
Nup54 T A 5: 92,419,567 I375L possibly damaging Het
Nup93 T C 8: 94,306,102 F539L probably damaging Het
Olfr138 A G 17: 38,275,344 E191G probably damaging Het
Olfr417 T A 1: 174,369,452 H178Q probably damaging Het
Olfr480 A C 7: 108,066,725 Y24* probably null Het
Olfr874 T A 9: 37,746,968 M278K probably benign Het
Panx1 A T 9: 15,007,428 D378E probably damaging Het
Papss1 T A 3: 131,583,184 V170D possibly damaging Het
Pcnx T C 12: 81,918,732 S558P probably damaging Het
Pde3a T A 6: 141,250,353 I255N probably damaging Het
Pde3a G T 6: 141,487,513 A757S probably damaging Het
Pdzph1 A G 17: 58,922,583 Y1027H probably damaging Het
Pkhd1 G T 1: 20,551,020 R805S probably benign Het
Polr1a G A 6: 71,909,203 G14D probably damaging Het
Prg4 T A 1: 150,460,669 D60V probably damaging Het
Ptprc T C 1: 138,112,227 S311G probably benign Het
Rapgefl1 G A 11: 98,842,209 R205K probably benign Het
Rcan2 A T 17: 44,037,089 probably null Het
Rock1 A G 18: 10,079,207 I1087T probably damaging Het
Sectm1b A G 11: 121,054,942 I191T possibly damaging Het
Setd1b T C 5: 123,147,613 S241P unknown Het
Srpk2 T C 5: 23,524,150 K497R probably benign Het
Sspo T C 6: 48,491,006 S4296P probably damaging Het
Syne4 T C 7: 30,316,883 V168A probably benign Het
Tank T C 2: 61,649,912 F264S probably damaging Het
Ticrr T C 7: 79,695,207 S1607P probably damaging Het
Trim30a A G 7: 104,411,198 V457A probably damaging Het
Trim43b T A 9: 89,085,571 K336N probably damaging Het
Trim47 T C 11: 116,106,137 Q598R probably damaging Het
Tspan12 T C 6: 21,851,023 N18S probably damaging Het
Ubap2 A G 4: 41,221,607 S231P probably benign Het
Vit A G 17: 78,622,746 D380G probably damaging Het
Vmn2r2 T C 3: 64,134,521 N258D possibly damaging Het
Vmn2r52 C T 7: 10,173,406 C131Y possibly damaging Het
Zadh2 T C 18: 84,095,318 V373A possibly damaging Het
Zfp58 A T 13: 67,491,188 F395I probably damaging Het
Zfp940 C A 7: 29,845,010 G491C probably damaging Het
Other mutations in Etfbkmt
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02455:Etfbkmt APN 6 149147226 missense probably damaging 1.00
IGL03149:Etfbkmt APN 6 149144283 missense probably damaging 1.00
R0450:Etfbkmt UTSW 6 149150584 missense probably benign 0.02
R0510:Etfbkmt UTSW 6 149150584 missense probably benign 0.02
R4111:Etfbkmt UTSW 6 149144591 intron probably benign
R4112:Etfbkmt UTSW 6 149144591 intron probably benign
R4786:Etfbkmt UTSW 6 149147246 start codon destroyed probably benign 0.01
R5053:Etfbkmt UTSW 6 149147268 nonsense probably null
R5304:Etfbkmt UTSW 6 149147206 missense probably damaging 1.00
R5780:Etfbkmt UTSW 6 149147159 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGGATATGGACATGTTGGCTAGAC -3'
(R):5'- AGTAGGGATCACTGTAGGGC -3'

Sequencing Primer
(F):5'- TGTTGGCTAGACTAAGAAATTTCAG -3'
(R):5'- AAGCCGTAACTGGATTTCCG -3'
Posted On2014-06-23