Mutagenetix > Incidental Mutation

Incidental Mutation 'R1818:Shisa9'

204648

Institutional Source

Beutler Lab

Gene Symbol

Shisa9

Ensembl Gene

ENSMUSG00000022494

Gene Name

shisa family member 9

Synonyms

2700045P11Rik, CKAMP44

MMRRC Submission

039846-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.100) question?

Stock #

R1818 (G1)

Quality Score

203

Status

Not validated

Chromosome

Chromosomal Location

11801977-12088766 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 12085426 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Proline at position 329 (Q329P)

Ref Sequence

ENSEMBL: ENSMUSP00000023138 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023138] [ENSMUST00000170672]

AlphaFold

Q9CZN4

Predicted Effect

probably damaging
Transcript: ENSMUST00000023138
AA Change: Q329P

PolyPhen 2 Score 0.961 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000023138
Gene: ENSMUSG00000022494
AA Change: Q329P

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
low complexity region	28	61	N/A	INTRINSIC
Pfam:Shisa	70	254	7.9e-56	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000170672
AA Change: Q345P

PolyPhen 2 Score 0.951 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000132646
Gene: ENSMUSG00000022494
AA Change: Q345P

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
low complexity region	28	61	N/A	INTRINSIC
Pfam:Shisa	71	260	2.1e-55	PFAM

Coding Region Coverage

1x: 97.3%
3x: 96.6%
10x: 94.5%
20x: 90.4%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced AMPA-mediated synaptic currents in retinogeniculate and corticogeniculate synapses, enhanced paired-pulse facilitation in retinogeniculate synapses and decreased synaptic depression. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 93 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aass	T	A	6: 23,075,857 (GRCm39)		probably null	Het
Adam6b	T	A	12: 113,454,876 (GRCm39)	N564K	probably benign	Het
Ahi1	A	G	10: 20,864,461 (GRCm39)	Y731C	probably damaging	Het
Ankk1	A	G	9: 49,331,725 (GRCm39)	Y190H	probably benign	Het
Ankmy1	T	A	1: 92,814,553 (GRCm39)	D318V	probably benign	Het
Ankrd33b	G	A	15: 31,367,267 (GRCm39)	A91V	probably damaging	Het
Ap3b1	A	G	13: 94,608,212 (GRCm39)	N561S	possibly damaging	Het
Apob	A	G	12: 8,056,834 (GRCm39)	N1739S	probably damaging	Het
Apob	A	G	12: 8,063,064 (GRCm39)	T236A	possibly damaging	Het
Birc6	G	A	17: 74,956,844 (GRCm39)	A3593T	probably damaging	Het
Bnc2	A	G	4: 84,210,111 (GRCm39)	F778L	possibly damaging	Het
Capn2	T	A	1: 182,300,162 (GRCm39)	K609N	probably benign	Het
Car9	G	T	4: 43,512,439 (GRCm39)		probably null	Het
Card11	A	T	5: 140,871,315 (GRCm39)	D729E	probably benign	Het
Ccl20	A	G	1: 83,095,529 (GRCm39)	Y30C	probably damaging	Het
Cd209a	G	A	8: 3,795,576 (GRCm39)	T106I	probably damaging	Het
Cebpz	A	G	17: 79,242,805 (GRCm39)	L283P	probably damaging	Het
Cecr2	A	G	6: 120,708,228 (GRCm39)	T77A	probably damaging	Het
Clec4e	T	A	6: 123,262,452 (GRCm39)	D155V	possibly damaging	Het
Col25a1	G	A	3: 130,379,386 (GRCm39)		probably null	Het
Cyp2j11	A	T	4: 96,185,976 (GRCm39)	V403D	probably damaging	Het
Cyp4v3	G	A	8: 45,768,673 (GRCm39)	R296C	possibly damaging	Het
Ddx59	A	G	1: 136,360,245 (GRCm39)	I420V	probably damaging	Het
Denr	T	A	5: 124,055,283 (GRCm39)	D49E	probably benign	Het
Dnaaf3	A	T	7: 4,526,568 (GRCm39)		probably null	Het
Dnaaf3	G	T	7: 4,526,569 (GRCm39)	L503M	probably benign	Het
Dnah7a	A	C	1: 53,598,307 (GRCm39)	D1409E	probably benign	Het
Dnai4	A	G	4: 102,929,854 (GRCm39)	V56A	possibly damaging	Het
Efcab3	T	A	11: 104,612,333 (GRCm39)	L652Q	probably benign	Het
Ehd4	C	T	2: 119,932,885 (GRCm39)	W180*	probably null	Het
Ephb2	A	G	4: 136,382,647 (GRCm39)	S984P	probably benign	Het
Eva1a	T	C	6: 82,048,125 (GRCm39)	M1T	probably null	Het
Fam90a1a	C	G	8: 22,453,787 (GRCm39)	P381A	possibly damaging	Het
Fam90a1a	C	A	8: 22,453,788 (GRCm39)	P381Q	probably damaging	Het
Flnc	T	C	6: 29,457,447 (GRCm39)	Y2382H	probably damaging	Het
Flrt1	A	T	19: 7,072,711 (GRCm39)	L612Q	probably damaging	Het
Fubp1	T	A	3: 151,927,806 (GRCm39)	N419K	probably damaging	Het
Gin1	A	G	1: 97,712,951 (GRCm39)		probably null	Het
Gm4847	T	A	1: 166,465,788 (GRCm39)	H267L	probably damaging	Het
Golga4	T	G	9: 118,402,055 (GRCm39)	V91G	probably damaging	Het
Hip1r	T	C	5: 124,134,018 (GRCm39)		probably null	Het
Ice2	A	G	9: 69,339,383 (GRCm39)	S967G	probably benign	Het
Il18rap	A	G	1: 40,570,687 (GRCm39)	I210V	probably benign	Het
Impdh2	T	G	9: 108,440,411 (GRCm39)		probably null	Het
Inmt	C	A	6: 55,150,404 (GRCm39)	V78F	possibly damaging	Het
Inpp5e	T	C	2: 26,287,886 (GRCm39)	S637G	probably benign	Het
Kansl1	T	C	11: 104,233,283 (GRCm39)	H748R	possibly damaging	Het
Kif28	T	C	1: 179,533,319 (GRCm39)	K541E	possibly damaging	Het
Kifc1	G	A	17: 34,103,685 (GRCm39)	R195C	probably benign	Het
Kifc2	T	C	15: 76,550,281 (GRCm39)	V480A	probably damaging	Het
Lrrc74a	T	C	12: 86,784,484 (GRCm39)	Y71H	probably damaging	Het
Ly75	T	G	2: 60,142,121 (GRCm39)	T1330P	probably damaging	Het
Macf1	A	G	4: 123,270,210 (GRCm39)	V6647A	probably damaging	Het
Mgat1	T	C	11: 49,152,111 (GRCm39)	I198T	possibly damaging	Het
Morc3	A	G	16: 93,652,398 (GRCm39)	Y367C	probably damaging	Het
Mtfr1	A	G	3: 19,269,837 (GRCm39)	T162A	probably damaging	Het
Myrip	C	T	9: 120,217,228 (GRCm39)	S49L	probably damaging	Het
Nup153	A	T	13: 46,835,113 (GRCm39)	N1397K	possibly damaging	Het
Or5h26	T	C	16: 58,988,243 (GRCm39)	K88E	probably benign	Het
Or6x1	T	C	9: 40,098,558 (GRCm39)	V49A	probably benign	Het
Or8b36	T	C	9: 37,937,803 (GRCm39)	S234P	probably damaging	Het
Or8g21	T	C	9: 38,905,902 (GRCm39)	I276M	possibly damaging	Het
Pabpc2	G	T	18: 39,907,163 (GRCm39)	V143L	probably damaging	Het
Pals2	T	G	6: 50,140,411 (GRCm39)	F144V	probably benign	Het
Panx3	T	C	9: 37,575,322 (GRCm39)	K180R	probably benign	Het
Patj	G	A	4: 98,511,885 (GRCm39)	V144M	possibly damaging	Het
Pde1c	T	A	6: 56,103,877 (GRCm39)	K651*	probably null	Het
Pde4c	A	G	8: 71,179,638 (GRCm39)	H63R	probably benign	Het
Pdha2	T	A	3: 140,916,960 (GRCm39)	K183*	probably null	Het
Pkd1l3	T	A	8: 110,375,038 (GRCm39)	C1504S	probably benign	Het
Plbd2	A	T	5: 120,625,574 (GRCm39)		probably null	Het
Poteg	G	A	8: 27,940,195 (GRCm39)	W121*	probably null	Het
Prf1	C	A	10: 61,138,762 (GRCm39)	T240N	probably damaging	Het
Ptprf	A	G	4: 118,067,068 (GRCm39)	Y1883H	probably damaging	Het
Puf60	T	C	15: 75,943,323 (GRCm39)	T322A	possibly damaging	Het
Rev3l	A	G	10: 39,704,420 (GRCm39)	I281M	probably benign	Het
Rufy1	T	C	11: 50,305,399 (GRCm39)	I305V	probably benign	Het
Siglech	G	A	7: 55,418,332 (GRCm39)	R100Q	probably damaging	Het
Slc13a5	T	A	11: 72,144,169 (GRCm39)	Y303F	probably benign	Het
Snx6	C	T	12: 54,830,259 (GRCm39)	V67I	possibly damaging	Het
Spef2	C	T	15: 9,584,194 (GRCm39)	E1624K	probably damaging	Het
Tecpr2	A	G	12: 110,892,888 (GRCm39)	Y310C	probably damaging	Het
Top1	T	A	2: 160,557,643 (GRCm39)	L575Q	probably damaging	Het
Usp16	C	T	16: 87,276,020 (GRCm39)	R452*	probably null	Het
Utrn	A	G	10: 12,585,708 (GRCm39)		probably null	Het
Vps13b	G	A	15: 35,877,723 (GRCm39)	G2899E	probably benign	Het
Wipi2	T	A	5: 142,643,963 (GRCm39)	L115Q	probably damaging	Het
Zbtb7c	A	C	18: 76,270,596 (GRCm39)	E228A	probably damaging	Het
Zfp26	T	C	9: 20,353,487 (GRCm39)	T101A	probably benign	Het
Zfp593	A	T	4: 133,972,394 (GRCm39)		probably null	Het
Zfp646	G	A	7: 127,482,292 (GRCm39)	G1490S	probably benign	Het
Zfp948	G	A	17: 21,805,069 (GRCm39)	V20M	probably damaging	Het
Zranb3	A	T	1: 127,945,293 (GRCm39)		probably null	Het

Other mutations in Shisa9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01981:Shisa9	APN	16	12,062,522 (GRCm39)	missense	probably benign	0.04
IGL02011:Shisa9	APN	16	12,062,502 (GRCm39)	missense	possibly damaging	0.87
IGL02884:Shisa9	APN	16	11,814,907 (GRCm39)	splice site	probably benign
PIT4508001:Shisa9	UTSW	16	12,085,344 (GRCm39)	missense	probably benign	0.00
R0194:Shisa9	UTSW	16	11,802,818 (GRCm39)	missense	probably damaging	1.00
R0309:Shisa9	UTSW	16	11,814,987 (GRCm39)	missense	probably damaging	1.00
R0588:Shisa9	UTSW	16	12,085,638 (GRCm39)	missense	probably damaging	0.99
R1469:Shisa9	UTSW	16	11,802,935 (GRCm39)	missense	probably damaging	1.00
R1469:Shisa9	UTSW	16	11,802,935 (GRCm39)	missense	probably damaging	1.00
R1781:Shisa9	UTSW	16	12,085,521 (GRCm39)	missense	probably benign	0.00
R1943:Shisa9	UTSW	16	12,085,620 (GRCm39)	missense	probably benign	0.06
R2263:Shisa9	UTSW	16	11,802,631 (GRCm39)	missense	possibly damaging	0.53
R3742:Shisa9	UTSW	16	12,085,528 (GRCm39)	missense	probably damaging	1.00
R5068:Shisa9	UTSW	16	12,085,412 (GRCm39)	missense	possibly damaging	0.48
R5977:Shisa9	UTSW	16	12,085,292 (GRCm39)	missense	probably benign	0.01
R6032:Shisa9	UTSW	16	11,802,772 (GRCm39)	missense	possibly damaging	0.76
R6032:Shisa9	UTSW	16	11,802,772 (GRCm39)	missense	possibly damaging	0.76
R6487:Shisa9	UTSW	16	12,062,475 (GRCm39)	missense	probably benign	0.01
R6773:Shisa9	UTSW	16	11,802,892 (GRCm39)	missense	probably damaging	1.00
R8341:Shisa9	UTSW	16	11,815,015 (GRCm39)	missense	possibly damaging	0.60
R9035:Shisa9	UTSW	16	11,802,902 (GRCm39)	missense	probably damaging	1.00
R9390:Shisa9	UTSW	16	12,085,408 (GRCm39)	missense	possibly damaging	0.73
R9454:Shisa9	UTSW	16	11,802,523 (GRCm39)	missense	probably benign	0.00
R9658:Shisa9	UTSW	16	12,062,520 (GRCm39)	missense	possibly damaging	0.95
R9665:Shisa9	UTSW	16	12,085,446 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- AGTTGGCTTGCCTAACTCCC -3'
(R):5'- GACAGTCACTTCTGTTTTGCTG -3'

Sequencing Primer
(F):5'- GGCTTGCCTAACTCCCTAACTC -3'
(R):5'- AAGTGCTGGGTGCGAGTCC -3'

Posted On

2014-06-23