Mutagenetix > Incidental Mutation

Incidental Mutation 'R1840:Ptpn14'

205661

Institutional Source

Beutler Lab

Gene Symbol

Ptpn14

Ensembl Gene

ENSMUSG00000026604

Gene Name

protein tyrosine phosphatase, non-receptor type 14

Synonyms

C130080N23Rik, OTTMUSG00000022087, PTP36

MMRRC Submission

039866-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1840 (G1)

Quality Score

221

Status

Not validated

Chromosome

Chromosomal Location

189460465-189608892 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 189519048 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Histidine at position 26 (R26H)

Ref Sequence

ENSEMBL: ENSMUSP00000027898 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027898] [ENSMUST00000097442]

AlphaFold

Q62130

Predicted Effect

probably damaging
Transcript: ENSMUST00000027898
AA Change: R26H

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000027898
Gene: ENSMUSG00000026604
AA Change: R26H

Domain	Start	End	E-Value	Type
B41	17	220	3.7e-67	SMART
FERM_C	224	310	3.43e-15	SMART
low complexity region	565	575	N/A	INTRINSIC
low complexity region	633	639	N/A	INTRINSIC
low complexity region	710	718	N/A	INTRINSIC
low complexity region	745	758	N/A	INTRINSIC
low complexity region	817	834	N/A	INTRINSIC
PTPc	910	1184	2.14e-103	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000097442
AA Change: R26H

PolyPhen 2 Score 0.227 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000095051
Gene: ENSMUSG00000026604
AA Change: R26H

Domain	Start	End	E-Value	Type
B41	17	220	3.7e-67	SMART
FERM_C	224	310	3.43e-15	SMART
low complexity region	565	575	N/A	INTRINSIC
low complexity region	633	639	N/A	INTRINSIC
low complexity region	710	718	N/A	INTRINSIC
low complexity region	745	758	N/A	INTRINSIC
low complexity region	817	834	N/A	INTRINSIC
PTPc	910	1184	2.14e-103	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128275

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000194127

Coding Region Coverage

1x: 97.5%
3x: 96.8%
10x: 95.2%
20x: 92.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP contains an N-terminal noncatalytic domain similar to that of band 4.1 superfamily cytoskeleton-associated proteins, which suggested the membrane or cytoskeleton localization of this protein. It appears to regulate lymphatic development in mammals, and a loss of function mutation has been found in a kindred with a lymphedema-choanal atresia. [provided by RefSeq, Sep 2010]
PHENOTYPE: Mice homozygous for a gene trap allele exhibit some postnatal growth retardation, decreased body weight, periorbital and limb edema, and lymphatic vessel hyperplasia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 118 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2510009E07Rik	T	A	16: 21,472,236 (GRCm39)	M85L	probably benign	Het
Aatk	T	G	11: 119,904,558 (GRCm39)	D206A	probably damaging	Het
Agap3	A	G	5: 24,705,229 (GRCm39)	D719G	probably damaging	Het
Agrn	G	A	4: 156,251,872 (GRCm39)	R1797C	probably damaging	Het
Ascc3	T	A	10: 50,566,257 (GRCm39)	M734K	probably benign	Het
Asph	T	A	4: 9,601,340 (GRCm39)	M136L	possibly damaging	Het
Atm	A	T	9: 53,367,830 (GRCm39)	V2431E	probably damaging	Het
Atp2b1	A	G	10: 98,858,791 (GRCm39)	H1158R	probably benign	Het
Atxn7l1	A	G	12: 33,421,032 (GRCm39)		probably null	Het
BC024139	G	T	15: 76,004,842 (GRCm39)	S611R	probably benign	Het
Becn1	C	T	11: 101,186,392 (GRCm39)	G105S	probably damaging	Het
Bud13	A	G	9: 46,197,706 (GRCm39)	E70G	probably damaging	Het
Cacul1	A	T	19: 60,522,688 (GRCm39)	L282*	probably null	Het
Catspere2	A	G	1: 177,830,581 (GRCm39)	D30G	possibly damaging	Het
Ccar1	T	A	10: 62,599,289 (GRCm39)	K614M	probably damaging	Het
Cd96	T	C	16: 45,919,455 (GRCm39)	T189A	probably benign	Het
Cdh5	C	A	8: 104,853,248 (GRCm39)	Y189*	probably null	Het
Chka	A	G	19: 3,936,460 (GRCm39)	N284S	probably benign	Het
Cntn6	A	T	6: 104,751,441 (GRCm39)	I366F	probably damaging	Het
Csmd3	C	T	15: 47,470,560 (GRCm39)	G3372E	probably damaging	Het
Cyp4f16	T	C	17: 32,761,980 (GRCm39)		probably null	Het
Dcaf6	A	G	1: 165,227,317 (GRCm39)	V270A	probably damaging	Het
Ddx60	T	A	8: 62,422,587 (GRCm39)	I608N	probably damaging	Het
Dnah9	A	T	11: 65,725,024 (GRCm39)	C1849*	probably null	Het
Eci3	C	A	13: 35,144,024 (GRCm39)	V34L	probably benign	Het
Eif1ad9	T	C	12: 88,296,181 (GRCm39)	V53A	probably benign	Het
Entrep2	C	A	7: 64,408,943 (GRCm39)	V484L	probably benign	Het
Epha1	C	T	6: 42,340,522 (GRCm39)	R583H	probably damaging	Het
Erbin	A	T	13: 103,971,455 (GRCm39)	N720K	probably benign	Het
Eya1	T	A	1: 14,299,728 (GRCm39)	R346*	probably null	Het
Fhdc1	G	A	3: 84,353,128 (GRCm39)	T699I	possibly damaging	Het
Flvcr2	T	C	12: 85,849,995 (GRCm39)	V427A	possibly damaging	Het
Frey1	T	C	2: 92,213,554 (GRCm39)	S36P	probably benign	Het
Fzd9	T	A	5: 135,278,425 (GRCm39)	T487S	probably benign	Het
Gas2l3	T	C	10: 89,258,113 (GRCm39)	Y160C	possibly damaging	Het
Gm10269	T	C	18: 20,815,866 (GRCm39)	K52R	probably damaging	Het
Gm8674	A	T	13: 50,055,801 (GRCm39)		noncoding transcript	Het
Gpr61	A	G	3: 108,057,797 (GRCm39)	V288A	possibly damaging	Het
Gramd4	T	C	15: 86,014,393 (GRCm39)		probably null	Het
Gtpbp4	A	G	13: 9,029,500 (GRCm39)	L403P	probably benign	Het
H6pd	A	T	4: 150,066,507 (GRCm39)	D626E	possibly damaging	Het
Herc6	T	A	6: 57,635,091 (GRCm39)	L769*	probably null	Het
Hes5	A	G	4: 155,045,711 (GRCm39)	K58R	probably damaging	Het
Heyl	A	G	4: 123,135,183 (GRCm39)	I59V	probably damaging	Het
Hpca	A	G	4: 129,012,393 (GRCm39)	F48L	probably damaging	Het
Ice1	C	T	13: 70,754,337 (GRCm39)	R583Q	probably benign	Het
Ints2	C	T	11: 86,123,911 (GRCm39)	G626R	probably damaging	Het
Kansl1l	T	A	1: 66,817,191 (GRCm39)	I390F	probably damaging	Het
Kat5	C	T	19: 5,659,266 (GRCm39)	V95M	possibly damaging	Het
Kcnh4	T	A	11: 100,636,167 (GRCm39)	I827F	possibly damaging	Het
Kif1b	C	T	4: 149,272,589 (GRCm39)	R138Q	probably damaging	Het
Kirrel1	C	T	3: 86,996,458 (GRCm39)	M380I	probably null	Het
Lats1	T	A	10: 7,586,703 (GRCm39)	L955*	probably null	Het
Ldlrad2	A	C	4: 137,299,495 (GRCm39)	C110G	possibly damaging	Het
Lgi3	G	A	14: 70,772,216 (GRCm39)		probably null	Het
Lingo1	A	G	9: 56,527,842 (GRCm39)	M249T	probably benign	Het
Lrig3	A	T	10: 125,849,258 (GRCm39)	R993*	probably null	Het
Lsm14b	T	A	2: 179,668,521 (GRCm39)	I74N	probably damaging	Het
Lyplal1	T	A	1: 185,832,414 (GRCm39)	I114F	probably damaging	Het
Mmp15	A	G	8: 96,092,048 (GRCm39)	Y86C	probably damaging	Het
Myh2	A	G	11: 67,077,313 (GRCm39)	E816G	probably benign	Het
Myo5c	A	G	9: 75,157,017 (GRCm39)	N151S	probably damaging	Het
Nckap1	T	A	2: 80,332,594 (GRCm39)	E1082V	possibly damaging	Het
Nrg4	A	C	9: 55,189,890 (GRCm39)		probably benign	Het
Nrp2	T	C	1: 62,777,498 (GRCm39)	L101P	probably damaging	Het
Or14j5	A	T	17: 38,161,639 (GRCm39)	D52V	probably damaging	Het
Or2at1	A	T	7: 99,416,803 (GRCm39)	T145S	probably benign	Het
Or4p19	T	C	2: 88,242,411 (GRCm39)	D197G	probably benign	Het
Or51q1c	A	G	7: 103,653,324 (GRCm39)	I281V	probably benign	Het
Or5ak22	G	A	2: 85,230,512 (GRCm39)	R122C	probably benign	Het
Parp14	T	A	16: 35,683,819 (GRCm39)	E169V	probably damaging	Het
Pcolce2	A	T	9: 95,552,256 (GRCm39)	N130Y	probably benign	Het
Pcolce2	G	A	9: 95,552,170 (GRCm39)	R101H	probably damaging	Het
Plscr1	A	T	9: 92,140,127 (GRCm39)	S5C	unknown	Het
Plxdc2	T	C	2: 16,674,667 (GRCm39)	V338A	probably benign	Het
Psg23	T	A	7: 18,344,363 (GRCm39)	N364I	possibly damaging	Het
Psmg4	A	G	13: 34,362,039 (GRCm39)	E109G	probably damaging	Het
Ptk2	T	C	15: 73,082,733 (GRCm39)	E908G	probably damaging	Het
Ranbp2	T	A	10: 58,314,588 (GRCm39)	N1769K	probably benign	Het
Rbm14	C	T	19: 4,851,823 (GRCm39)		probably benign	Het
Rgs7	A	T	1: 174,980,714 (GRCm39)	D103E	probably damaging	Het
Rmnd5a	G	A	6: 71,375,439 (GRCm39)	L80F	probably benign	Het
Rock2	T	A	12: 16,978,990 (GRCm39)	D93E	probably benign	Het
Rps6ka6	A	G	X: 110,330,629 (GRCm39)	I246T	possibly damaging	Het
Rubcn	T	C	16: 32,646,542 (GRCm39)	M803V	possibly damaging	Het
Ryr3	T	C	2: 112,581,165 (GRCm39)	Y2889C	probably damaging	Het
Sall2	T	C	14: 52,551,182 (GRCm39)	N671S	probably damaging	Het
Selplg	T	C	5: 113,957,905 (GRCm39)	T134A	possibly damaging	Het
Sez6	C	A	11: 77,844,543 (GRCm39)	T122N	possibly damaging	Het
Slc9b1	T	A	3: 135,063,229 (GRCm39)	D4E	unknown	Het
Smim18	A	G	8: 34,232,376 (GRCm39)	M81T	probably benign	Het
Snap91	A	T	9: 86,697,518 (GRCm39)	H281Q	probably damaging	Het
Sparc	C	A	11: 55,286,692 (GRCm39)	C302F	probably damaging	Het
Spg11	A	G	2: 121,932,237 (GRCm39)	L535P	probably damaging	Het
Spsb1	G	A	4: 149,991,088 (GRCm39)	T160I	probably damaging	Het
Stra6	A	G	9: 58,047,813 (GRCm39)	N128S	probably benign	Het
Strc	T	C	2: 121,209,777 (GRCm39)	E182G	probably damaging	Het
Sult2a6	A	G	7: 13,988,754 (GRCm39)	M2T	probably benign	Het
Sv2c	T	C	13: 96,118,352 (GRCm39)	N499S	probably benign	Het
Szt2	A	T	4: 118,222,854 (GRCm39)		probably benign	Het
Tbx20	A	T	9: 24,636,972 (GRCm39)	S372T	probably benign	Het
Tcp11l2	T	A	10: 84,440,463 (GRCm39)	S289T	probably damaging	Het
Tdrd1	A	G	19: 56,830,744 (GRCm39)	E259G	probably damaging	Het
Thsd7a	T	A	6: 12,330,973 (GRCm39)	I1390L	probably benign	Het
Tln2	G	A	9: 67,249,325 (GRCm39)	R921W	probably damaging	Het
Tmem126a	C	A	7: 90,102,092 (GRCm39)	G36*	probably null	Het
Tmem245	C	T	4: 56,903,947 (GRCm39)	V606I	probably benign	Het
Trpm6	A	G	19: 18,843,631 (GRCm39)	D1665G	probably benign	Het
Ubac2	T	G	14: 122,231,674 (GRCm39)	V200G	probably benign	Het
Ubr5	G	A	15: 37,981,161 (GRCm39)	A2372V	possibly damaging	Het
Ugcg	C	T	4: 59,219,517 (GRCm39)	P285S	probably damaging	Het
Vmn1r9	T	C	6: 57,048,522 (GRCm39)	V199A	probably damaging	Het
Vmn2r118	T	A	17: 55,917,406 (GRCm39)	K369*	probably null	Het
Xpnpep3	G	T	15: 81,311,554 (GRCm39)	A87S	probably benign	Het
Zc3h7a	C	T	16: 10,978,890 (GRCm39)	R95H	probably damaging	Het
Zdhhc11	A	G	13: 74,122,771 (GRCm39)	N169S	probably damaging	Het
Zfp62	T	A	11: 49,107,215 (GRCm39)	D435E	probably damaging	Het
Zfyve16	T	C	13: 92,648,033 (GRCm39)	D1007G	possibly damaging	Het

Other mutations in Ptpn14

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01014:Ptpn14	APN	1	189,554,830 (GRCm39)	missense	probably damaging	1.00
IGL02501:Ptpn14	APN	1	189,582,587 (GRCm39)	missense	probably benign	0.14
IGL03011:Ptpn14	APN	1	189,571,754 (GRCm39)	missense	probably damaging	1.00
jelly	UTSW	1	189,554,872 (GRCm39)	nonsense	probably null
Rubens	UTSW	1	189,564,997 (GRCm39)	critical splice donor site	probably null
R0724:Ptpn14	UTSW	1	189,583,144 (GRCm39)	missense	possibly damaging	0.52
R0791:Ptpn14	UTSW	1	189,568,637 (GRCm39)	splice site	probably benign
R1363:Ptpn14	UTSW	1	189,530,825 (GRCm39)	missense	probably damaging	1.00
R1605:Ptpn14	UTSW	1	189,597,709 (GRCm39)	missense	probably benign	0.00
R1845:Ptpn14	UTSW	1	189,571,699 (GRCm39)	missense	possibly damaging	0.96
R1891:Ptpn14	UTSW	1	189,530,850 (GRCm39)	missense	probably damaging	1.00
R2187:Ptpn14	UTSW	1	189,595,425 (GRCm39)	nonsense	probably null
R2288:Ptpn14	UTSW	1	189,597,695 (GRCm39)	missense	probably damaging	1.00
R3686:Ptpn14	UTSW	1	189,583,596 (GRCm39)	missense	probably damaging	1.00
R3895:Ptpn14	UTSW	1	189,582,743 (GRCm39)	missense	probably benign	0.31
R3898:Ptpn14	UTSW	1	189,582,728 (GRCm39)	missense	probably benign	0.35
R4004:Ptpn14	UTSW	1	189,582,707 (GRCm39)	missense	probably benign	0.00
R4816:Ptpn14	UTSW	1	189,588,997 (GRCm39)	missense	probably damaging	1.00
R4883:Ptpn14	UTSW	1	189,582,997 (GRCm39)	missense	probably damaging	0.99
R4928:Ptpn14	UTSW	1	189,554,839 (GRCm39)	missense	probably damaging	1.00
R4931:Ptpn14	UTSW	1	189,583,474 (GRCm39)	missense	probably benign
R4957:Ptpn14	UTSW	1	189,583,469 (GRCm39)	missense	probably benign	0.02
R5009:Ptpn14	UTSW	1	189,582,731 (GRCm39)	missense	probably benign
R5038:Ptpn14	UTSW	1	189,519,083 (GRCm39)	missense	probably damaging	1.00
R5264:Ptpn14	UTSW	1	189,564,997 (GRCm39)	critical splice donor site	probably null
R5373:Ptpn14	UTSW	1	189,583,160 (GRCm39)	missense	probably benign
R5441:Ptpn14	UTSW	1	189,530,767 (GRCm39)	missense	probably damaging	1.00
R5540:Ptpn14	UTSW	1	189,578,561 (GRCm39)	missense	probably benign	0.05
R5638:Ptpn14	UTSW	1	189,519,038 (GRCm39)	missense	probably damaging	1.00
R5746:Ptpn14	UTSW	1	189,578,610 (GRCm39)	critical splice donor site	probably null
R5872:Ptpn14	UTSW	1	189,583,229 (GRCm39)	missense	probably benign	0.00
R5988:Ptpn14	UTSW	1	189,582,584 (GRCm39)	missense	probably damaging	1.00
R6139:Ptpn14	UTSW	1	189,583,362 (GRCm39)	missense	probably benign	0.01
R6295:Ptpn14	UTSW	1	189,582,997 (GRCm39)	missense	probably damaging	0.99
R6770:Ptpn14	UTSW	1	189,564,970 (GRCm39)	missense	probably damaging	1.00
R7097:Ptpn14	UTSW	1	189,595,595 (GRCm39)	nonsense	probably null
R7320:Ptpn14	UTSW	1	189,564,956 (GRCm39)	missense	probably benign	0.11
R7324:Ptpn14	UTSW	1	189,595,621 (GRCm39)	missense	possibly damaging	0.46
R7599:Ptpn14	UTSW	1	189,582,942 (GRCm39)	missense	probably benign	0.39
R7699:Ptpn14	UTSW	1	189,597,608 (GRCm39)	missense	probably benign	0.08
R7700:Ptpn14	UTSW	1	189,597,608 (GRCm39)	missense	probably benign	0.08
R8379:Ptpn14	UTSW	1	189,565,598 (GRCm39)	missense	possibly damaging	0.95
R8889:Ptpn14	UTSW	1	189,554,872 (GRCm39)	nonsense	probably null
R9659:Ptpn14	UTSW	1	189,587,174 (GRCm39)	missense	probably benign	0.00
R9719:Ptpn14	UTSW	1	189,583,484 (GRCm39)	missense	probably benign	0.00
Z1177:Ptpn14	UTSW	1	189,592,667 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- CATACCTTAGTGTGACCACGC -3'
(R):5'- AGCAGGTTCTTTTAAACACACGC -3'

Sequencing Primer
(F):5'- TTAGTGTGACCACGCCGACAG -3'
(R):5'- GGTTCTTTTAAACACACGCTTAGGC -3'

Posted On

2014-06-23