Mutagenetix > Incidental Mutation

Incidental Mutation 'R1846:Crot'

207715

Institutional Source

Beutler Lab

Gene Symbol

Crot

Ensembl Gene

ENSMUSG00000003623

Gene Name

carnitine O-octanoyltransferase

Synonyms

1200003H03Rik

MMRRC Submission

039871-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.097) question?

Stock #

R1846 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

9016033-9047324 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 9038248 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glutamic Acid at position 93 (V93E)

Ref Sequence

ENSEMBL: ENSMUSP00000003720 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003720]

AlphaFold

Q9DC50

PDB Structure

Crystal Structure of Mouse Carnitine Octanoyltransferase [X-RAY DIFFRACTION]
Crystal structure of mouse carnitine octanoyltransferase in complex with octanoylcarnitine [X-RAY DIFFRACTION]
C323M mutant structure of mouse carnitine octanoyltransferase [X-RAY DIFFRACTION]
M335V mutant structure of mouse carnitine octanoyltransferase [X-RAY DIFFRACTION]

Predicted Effect

probably benign
Transcript: ENSMUST00000003720
AA Change: V93E

PolyPhen 2 Score 0.362 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000003720
Gene: ENSMUSG00000003623
AA Change: V93E

Domain	Start	End	E-Value	Type
Pfam:Carn_acyltransf	20	604	2.3e-167	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000157024

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.4%
20x: 92.6%

Validation Efficiency

99% (75/76)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the carnitine/choline acetyltransferase family. The encoded protein converts 4,8-dimethylnonanoyl-CoA to its corresponding carnitine ester. This transesterification occurs in the peroxisome and is necessary for transport of medium- and long- chain acyl-CoA molecules out of the peroxisome to the cytosol and mitochondria. The protein thus plays a role in lipid metabolism and fatty acid beta-oxidation. Alternatively spliced transcript variants have been described.[provided by RefSeq, Jan 2009]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900092C05Rik	G	A	7: 12,246,809 (GRCm39)	R63Q	probably benign	Het
Adamts20	A	T	15: 94,243,871 (GRCm39)	C619S	probably damaging	Het
Alx1	T	C	10: 102,861,165 (GRCm39)	D121G	possibly damaging	Het
Anks3	A	C	16: 4,771,748 (GRCm39)	M215R	probably benign	Het
Anxa4	T	A	6: 86,718,893 (GRCm39)		probably null	Het
Arhgef25	A	G	10: 127,021,733 (GRCm39)	V222A	probably damaging	Het
Bglap2	A	G	3: 88,285,932 (GRCm39)		probably benign	Het
Cars2	A	G	8: 11,564,674 (GRCm39)	V22A	probably benign	Het
Ccdc198	G	T	14: 49,473,420 (GRCm39)	L102I	probably damaging	Het
Cenpe	T	A	3: 134,945,606 (GRCm39)	I1040N	probably damaging	Het
Cep170	C	T	1: 176,583,335 (GRCm39)	D1015N	probably damaging	Het
Chia1	T	A	3: 106,038,181 (GRCm39)	I359N	probably damaging	Het
Dab1	C	T	4: 104,588,948 (GRCm39)	A524V	probably benign	Het
Dnmbp	T	C	19: 43,891,186 (GRCm39)	I194V	probably damaging	Het
Dock4	T	A	12: 40,783,267 (GRCm39)	C734S	probably benign	Het
Eif4e3	T	C	6: 99,617,662 (GRCm39)	S70G	probably benign	Het
Entpd3	G	A	9: 120,387,441 (GRCm39)	D213N	probably benign	Het
Ern2	T	G	7: 121,775,759 (GRCm39)	Y445S	probably benign	Het
Fasn	A	G	11: 120,704,133 (GRCm39)	S1429P	probably benign	Het
Fat4	A	G	3: 39,036,532 (GRCm39)	I3395V	probably benign	Het
Fbln2	C	A	6: 91,233,399 (GRCm39)	Q628K	possibly damaging	Het
Fbxo28	T	C	1: 182,153,845 (GRCm39)	N164D	probably benign	Het
Fez1	T	C	9: 36,779,063 (GRCm39)	S247P	probably damaging	Het
Gars1	A	G	6: 55,040,153 (GRCm39)	D360G	probably benign	Het
Gcfc2	A	T	6: 81,933,873 (GRCm39)	Q710L	probably damaging	Het
Ggt5	A	G	10: 75,446,376 (GRCm39)		probably null	Het
Glp1r	A	G	17: 31,148,909 (GRCm39)		probably null	Het
Hspa14	T	C	2: 3,492,697 (GRCm39)	D356G	possibly damaging	Het
Htt	T	A	5: 35,006,288 (GRCm39)	I1399N	probably damaging	Het
Kmt2e	G	A	5: 23,704,484 (GRCm39)		probably benign	Het
Krt36	C	A	11: 99,996,374 (GRCm39)	G17C	probably damaging	Het
Lama2	T	C	10: 27,088,092 (GRCm39)	E895G	probably damaging	Het
Lamb2	G	A	9: 108,364,586 (GRCm39)	R1142H	probably benign	Het
Lhcgr	C	T	17: 89,072,575 (GRCm39)		probably null	Het
Lpin2	A	G	17: 71,532,064 (GRCm39)	T140A	probably benign	Het
Metap1	A	G	3: 138,186,443 (GRCm39)		probably benign	Het
Mpeg1	T	C	19: 12,440,486 (GRCm39)	V648A	probably benign	Het
Mroh2a	A	G	1: 88,186,386 (GRCm39)	S64G	probably benign	Het
Muc4	T	A	16: 32,752,369 (GRCm38)	I749N	probably benign	Het
N4bp2	T	C	5: 65,965,862 (GRCm39)	F1304L	probably damaging	Het
Nup85	A	G	11: 115,459,239 (GRCm39)	E114G	probably benign	Het
Or2a5	A	G	6: 42,874,254 (GRCm39)	S290G	probably damaging	Het
Or4c10	A	G	2: 89,761,010 (GRCm39)	T286A	possibly damaging	Het
Or6b2b	A	T	1: 92,418,822 (GRCm39)	Y218*	probably null	Het
Pafah2	GCCCC	GCCCCC	4: 134,152,852 (GRCm39)		probably null	Het
Parp2	T	A	14: 51,052,843 (GRCm39)	C145*	probably null	Het
Plpp6	T	C	19: 28,941,680 (GRCm39)	S94P	probably benign	Het
Polr1a	T	C	6: 71,953,172 (GRCm39)	I1580T	probably damaging	Het
Polrmt	A	T	10: 79,574,043 (GRCm39)	V860E	probably damaging	Het
Ppp1r17	A	G	6: 55,999,412 (GRCm39)	E15G	possibly damaging	Het
Prl7b1	A	T	13: 27,786,831 (GRCm39)	W133R	probably damaging	Het
Ptk7	A	G	17: 46,887,416 (GRCm39)		probably null	Het
Rad23b	C	T	4: 55,383,637 (GRCm39)	Q290*	probably null	Het
Rorb	C	T	19: 18,932,445 (GRCm39)	E369K	probably damaging	Het
Rusc1	T	C	3: 88,999,452 (GRCm39)	D110G	probably damaging	Het
Smg7	A	G	1: 152,724,601 (GRCm39)	S527P	probably damaging	Het
Ssbp2	C	T	13: 91,812,268 (GRCm39)	P105L	probably damaging	Het
Stt3a	C	T	9: 36,674,681 (GRCm39)	R34H	probably damaging	Het
Sufu	T	A	19: 46,439,386 (GRCm39)	I202N	possibly damaging	Het
Thsd7b	G	A	1: 129,540,993 (GRCm39)	R289Q	probably damaging	Het
Tph1	A	T	7: 46,309,863 (GRCm39)	S130T	probably damaging	Het
Ttn	A	G	2: 76,776,030 (GRCm39)	S1671P	probably damaging	Het
Usp4	A	G	9: 108,249,935 (GRCm39)	I441V	probably benign	Het
Vmn1r8	A	G	6: 57,013,413 (GRCm39)	N155D	probably benign	Het
Vmn2r115	A	C	17: 23,578,357 (GRCm39)	K610T	probably damaging	Het
Vmn2r62	G	A	7: 42,438,546 (GRCm39)	P97S	probably damaging	Het
Zbtb40	T	C	4: 136,735,150 (GRCm39)	D297G	probably benign	Het
Zfp174	C	A	16: 3,672,599 (GRCm39)	Q383K	probably benign	Het
Zfp318	T	A	17: 46,724,592 (GRCm39)	D2198E	probably benign	Het
Zfp628	C	T	7: 4,923,866 (GRCm39)	P696L	possibly damaging	Het
Zgrf1	T	A	3: 127,409,112 (GRCm39)	N1695K	probably damaging	Het

Other mutations in Crot

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00756:Crot	APN	5	9,026,072 (GRCm39)	missense	probably damaging	1.00
IGL01013:Crot	APN	5	9,043,575 (GRCm39)	missense	probably benign	0.06
IGL01085:Crot	APN	5	9,023,955 (GRCm39)	missense	probably damaging	1.00
IGL02017:Crot	APN	5	9,020,046 (GRCm39)	splice site	probably benign
IGL02306:Crot	APN	5	9,018,701 (GRCm39)	missense	possibly damaging	0.94
IGL02612:Crot	APN	5	9,019,945 (GRCm39)	missense	probably damaging	1.00
IGL02884:Crot	APN	5	9,028,197 (GRCm39)	critical splice donor site	probably null
IGL03091:Crot	APN	5	9,016,897 (GRCm39)	missense	probably benign
IGL03356:Crot	APN	5	9,038,295 (GRCm39)	splice site	probably benign
ouray	UTSW	5	9,043,504 (GRCm39)	critical splice donor site	probably null
R0383:Crot	UTSW	5	9,018,734 (GRCm39)	missense	probably damaging	1.00
R0396:Crot	UTSW	5	9,019,959 (GRCm39)	missense	probably damaging	1.00
R0502:Crot	UTSW	5	9,026,075 (GRCm39)	missense	possibly damaging	0.66
R0503:Crot	UTSW	5	9,026,075 (GRCm39)	missense	possibly damaging	0.66
R0676:Crot	UTSW	5	9,043,622 (GRCm39)	utr 5 prime	probably benign
R1079:Crot	UTSW	5	9,043,504 (GRCm39)	critical splice donor site	probably null
R1472:Crot	UTSW	5	9,016,941 (GRCm39)	missense	probably damaging	1.00
R1595:Crot	UTSW	5	9,024,186 (GRCm39)	missense	probably benign	0.00
R1757:Crot	UTSW	5	9,037,828 (GRCm39)	missense	probably damaging	1.00
R1828:Crot	UTSW	5	9,019,080 (GRCm39)	missense	probably benign	0.01
R2142:Crot	UTSW	5	9,037,780 (GRCm39)	missense	possibly damaging	0.94
R3973:Crot	UTSW	5	9,027,541 (GRCm39)	missense	probably benign
R3974:Crot	UTSW	5	9,027,541 (GRCm39)	missense	probably benign
R3975:Crot	UTSW	5	9,027,541 (GRCm39)	missense	probably benign
R4445:Crot	UTSW	5	9,023,643 (GRCm39)	missense	probably damaging	1.00
R4446:Crot	UTSW	5	9,023,643 (GRCm39)	missense	probably damaging	1.00
R4995:Crot	UTSW	5	9,024,000 (GRCm39)	missense	probably damaging	1.00
R5084:Crot	UTSW	5	9,019,994 (GRCm39)	missense	probably damaging	1.00
R5464:Crot	UTSW	5	9,033,690 (GRCm39)	splice site	probably null
R5673:Crot	UTSW	5	9,038,131 (GRCm39)	missense	probably benign	0.00
R5814:Crot	UTSW	5	9,023,996 (GRCm39)	missense	probably damaging	0.99
R5935:Crot	UTSW	5	9,024,192 (GRCm39)	missense	probably benign
R5951:Crot	UTSW	5	9,019,120 (GRCm39)	nonsense	probably null
R6862:Crot	UTSW	5	9,039,641 (GRCm39)	missense	probably damaging	0.99
R6885:Crot	UTSW	5	9,023,635 (GRCm39)	missense	probably benign	0.00
R6983:Crot	UTSW	5	9,028,280 (GRCm39)	missense	probably benign	0.06
R7150:Crot	UTSW	5	9,037,878 (GRCm39)	missense	probably damaging	0.99
R7228:Crot	UTSW	5	9,026,051 (GRCm39)	missense	probably damaging	1.00
R7361:Crot	UTSW	5	9,027,534 (GRCm39)	missense	probably damaging	1.00
R7662:Crot	UTSW	5	9,019,072 (GRCm39)	missense	probably damaging	1.00
R7747:Crot	UTSW	5	9,018,869 (GRCm39)	critical splice donor site	probably null
R8002:Crot	UTSW	5	9,043,599 (GRCm39)	missense	probably benign	0.36
R8105:Crot	UTSW	5	9,027,505 (GRCm39)	missense	probably damaging	0.99
R8233:Crot	UTSW	5	9,026,027 (GRCm39)	missense	possibly damaging	0.77
R8474:Crot	UTSW	5	9,043,518 (GRCm39)	missense	probably damaging	1.00
R8519:Crot	UTSW	5	9,023,629 (GRCm39)	missense	probably benign
R8734:Crot	UTSW	5	9,028,208 (GRCm39)	missense	probably benign	0.02
R9528:Crot	UTSW	5	9,043,575 (GRCm39)	missense	possibly damaging	0.46
R9649:Crot	UTSW	5	9,024,170 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- CCTAGTTAAATTGACAGCATCTGC -3'
(R):5'- GATGGCGGAGTTAATGGTCC -3'

Sequencing Primer
(F):5'- TTGGGCAAGCTCACCTCTCAG -3'
(R):5'- CGGAGTTAATGGTCCCAAAAGTG -3'

Posted On

2014-06-23