Mutagenetix > Incidental Mutation

Incidental Mutation 'R0116:Grik3'

20782

Institutional Source

Beutler Lab

Gene Symbol

Grik3

Ensembl Gene

ENSMUSG00000001985

Gene Name

glutamate receptor, ionotropic, kainate 3

Synonyms

Glur7, Glur-7

MMRRC Submission

038402-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.159) question?

Stock #

R0116 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

125384493-125607966 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 125564349 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Lysine at position 444 (E444K)

Ref Sequence

ENSEMBL: ENSMUSP00000030676 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030676]

AlphaFold

B1AS29

Predicted Effect

probably benign
Transcript: ENSMUST00000030676
AA Change: E444K

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000030676
Gene: ENSMUSG00000001985
AA Change: E444K

Domain	Start	End	E-Value	Type
Pfam:ANF_receptor	55	398	7.8e-72	PFAM
PBPe	435	802	4.38e-133	SMART
Lig_chan-Glu_bd	445	509	5.77e-34	SMART
transmembrane domain	823	845	N/A	INTRINSIC

Meta Mutation Damage Score

0.0970

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.7%
20x: 94.2%

Validation Efficiency

94% (95/101)

MGI Phenotype

FUNCTION: Glutamate receptors are the predominant excitatory neurotransmitter receptors in the mammalian brain and are activated in a variety of normal neurophysiologic processes. This gene product belongs to the kainate family of glutamate receptors, which are composed of four subunits and function as ligand-activated ion channels. Transcript variants encoding different isoforms have been described for this gene, however, their full-length nature is not known. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit significantly reduced short- and long-term synaptic potentiation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 95 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931406C07Rik	A	T	9: 15,202,066 (GRCm39)	V152E	probably damaging	Het
Abca5	T	G	11: 110,167,331 (GRCm39)	E1495A	probably damaging	Het
Abcc12	G	A	8: 87,261,627 (GRCm39)	S668F	probably benign	Het
Adgrl4	A	T	3: 151,223,247 (GRCm39)	T608S	probably benign	Het
Angel2	G	A	1: 190,673,187 (GRCm39)	D255N	probably benign	Het
Apob	T	A	12: 8,039,113 (GRCm39)		probably benign	Het
Arfgef2	A	T	2: 166,715,603 (GRCm39)	R1349S	probably damaging	Het
Atp2b2	C	T	6: 113,770,656 (GRCm39)	V418I	probably damaging	Het
Birc6	C	A	17: 74,930,741 (GRCm39)		probably benign	Het
Capn13	T	A	17: 73,658,519 (GRCm39)	Y183F	probably damaging	Het
Cngb1	A	G	8: 95,987,266 (GRCm39)	S352P	probably damaging	Het
Col6a3	A	G	1: 90,741,273 (GRCm39)	S720P	probably damaging	Het
Cpa4	C	T	6: 30,579,657 (GRCm39)	R155W	probably damaging	Het
Dapk1	A	G	13: 60,908,914 (GRCm39)	I1176V	probably benign	Het
Dnah17	T	C	11: 117,949,132 (GRCm39)	E2959G	probably benign	Het
Dnah7b	T	A	1: 46,252,520 (GRCm39)	I1734N	possibly damaging	Het
Dnajb7	A	G	15: 81,291,555 (GRCm39)	Y261H	probably benign	Het
Dock2	T	C	11: 34,579,392 (GRCm39)		probably benign	Het
Dyrk3	A	T	1: 131,057,576 (GRCm39)	V199E	probably damaging	Het
F2r	G	T	13: 95,740,994 (GRCm39)	C180*	probably null	Het
F5	A	G	1: 164,012,483 (GRCm39)	S466G	probably benign	Het
Fbn2	A	T	18: 58,235,445 (GRCm39)	C677*	probably null	Het
Fbxo41	A	G	6: 85,454,890 (GRCm39)	S673P	probably damaging	Het
Fhad1	G	T	4: 141,667,406 (GRCm39)	H639N	probably benign	Het
Fmnl3	G	C	15: 99,220,619 (GRCm39)		probably benign	Het
Foxa2	A	G	2: 147,885,481 (GRCm39)	S270P	probably damaging	Het
Fxyd7	C	T	7: 30,746,793 (GRCm39)		probably null	Het
Gm5225	A	G	17: 24,243,032 (GRCm39)	D67G	probably benign	Het
Gsdma2	A	G	11: 98,540,009 (GRCm39)	K44E	probably damaging	Het
Haus1	T	A	18: 77,849,770 (GRCm39)	K130*	probably null	Het
Heg1	A	G	16: 33,556,028 (GRCm39)		probably benign	Het
Hormad2	A	G	11: 4,362,206 (GRCm39)		probably benign	Het
Hsd17b3	G	A	13: 64,206,403 (GRCm39)	R300C	possibly damaging	Het
Irf5	T	C	6: 29,536,108 (GRCm39)	F374S	probably damaging	Het
Itch	A	G	2: 155,059,903 (GRCm39)		probably benign	Het
Jade2	A	T	11: 51,722,136 (GRCm39)	L139Q	probably damaging	Het
Kif5c	G	A	2: 49,642,251 (GRCm39)		probably benign	Het
Lama1	T	C	17: 68,083,918 (GRCm39)	Y1387H	probably benign	Het
Larp4b	A	G	13: 9,220,724 (GRCm39)	R658G	probably damaging	Het
Mcph1	C	T	8: 18,838,264 (GRCm39)	L729F	probably benign	Het
Me1	A	T	9: 86,536,720 (GRCm39)	N118K	probably benign	Het
Med13	A	G	11: 86,210,723 (GRCm39)	L473S	probably damaging	Het
Mgam	T	A	6: 40,635,921 (GRCm39)	Y359N	probably damaging	Het
Morc2b	A	G	17: 33,356,015 (GRCm39)	S586P	probably damaging	Het
Mthfr	A	G	4: 148,135,980 (GRCm39)	D310G	probably benign	Het
Mtmr7	A	T	8: 41,034,447 (GRCm39)		probably benign	Het
Mtus1	A	G	8: 41,451,514 (GRCm39)		probably benign	Het
Mus81	G	T	19: 5,536,552 (GRCm39)	A138D	probably damaging	Het
Myom2	A	T	8: 15,167,633 (GRCm39)	I1073F	probably damaging	Het
Nhsl1	A	T	10: 18,400,990 (GRCm39)	K739*	probably null	Het
Nlrp4d	T	A	7: 10,108,818 (GRCm39)	K762N	probably benign	Het
Nrap	T	C	19: 56,343,978 (GRCm39)	Y724C	probably damaging	Het
Ogn	A	T	13: 49,774,514 (GRCm39)	Y219F	possibly damaging	Het
Or6c212	T	A	10: 129,558,846 (GRCm39)	D189V	probably damaging	Het
Or8b56	T	C	9: 38,739,860 (GRCm39)	L291P	probably damaging	Het
Or8g30	A	T	9: 39,230,160 (GRCm39)	I250N	probably damaging	Het
Padi2	T	C	4: 140,653,550 (GRCm39)	V180A	probably benign	Het
Papss2	C	T	19: 32,615,768 (GRCm39)	R167*	probably null	Het
Pcbp2	T	C	15: 102,382,670 (GRCm39)		probably benign	Het
Per1	T	A	11: 68,992,706 (GRCm39)		probably benign	Het
Pik3ca	T	C	3: 32,514,094 (GRCm39)	I860T	probably damaging	Het
Pkdrej	G	A	15: 85,701,746 (GRCm39)	Q1397*	probably null	Het
Plce1	T	C	19: 38,710,265 (GRCm39)	V1133A	probably benign	Het
Pnma8a	T	G	7: 16,694,625 (GRCm39)	V160G	probably damaging	Het
Prss12	T	C	3: 123,276,423 (GRCm39)	C351R	probably damaging	Het
Qprt	A	T	7: 126,708,269 (GRCm39)	L54Q	probably damaging	Het
Raf1	C	T	6: 115,603,344 (GRCm39)	S165N	probably damaging	Het
Rere	A	G	4: 150,701,433 (GRCm39)	N1271S	probably benign	Het
Rnasel	T	A	1: 153,630,258 (GRCm39)	L258H	probably damaging	Het
Ryr2	T	C	13: 11,724,807 (GRCm39)	D2502G	probably damaging	Het
Ryr3	G	A	2: 112,633,510 (GRCm39)	S2081L	probably damaging	Het
Sc5d	G	T	9: 42,171,155 (GRCm39)	Y11*	probably null	Het
Slc25a29	A	C	12: 108,793,017 (GRCm39)	L187R	possibly damaging	Het
Slc2a7	G	A	4: 150,252,721 (GRCm39)	V454M	probably benign	Het
Slco1b2	A	T	6: 141,615,114 (GRCm39)	T340S	probably benign	Het
Smarcc1	A	G	9: 109,976,172 (GRCm39)	N153S	possibly damaging	Het
Snx1	C	A	9: 65,995,821 (GRCm39)	E516*	probably null	Het
Sptlc2	T	C	12: 87,403,454 (GRCm39)	D115G	probably benign	Het
Stard9	A	G	2: 120,464,736 (GRCm39)	N67S	probably damaging	Het
Styxl2	A	C	1: 165,927,270 (GRCm39)	S781A	probably benign	Het
Swap70	G	A	7: 109,872,489 (GRCm39)	R368H	probably benign	Het
Tcaf3	T	C	6: 42,568,284 (GRCm39)	K691E	probably benign	Het
Tmco4	T	C	4: 138,781,231 (GRCm39)	F465S	probably damaging	Het
Tmem245	A	G	4: 56,926,213 (GRCm39)	S290P	probably benign	Het
Top2a	T	C	11: 98,894,416 (GRCm39)	T972A	probably benign	Het
Tpr	T	A	1: 150,285,898 (GRCm39)	S527R	probably damaging	Het
Traf2	T	C	2: 25,409,621 (GRCm39)	D443G	probably damaging	Het
Trim40	A	T	17: 37,194,039 (GRCm39)		probably null	Het
Trim42	A	T	9: 97,245,456 (GRCm39)	I448N	possibly damaging	Het
Ttll9	G	A	2: 152,825,054 (GRCm39)	V78M	probably damaging	Het
Vav1	C	T	17: 57,603,039 (GRCm39)	L88F	probably damaging	Het
Vps13b	A	G	15: 35,423,301 (GRCm39)	D207G	probably damaging	Het
Wdsub1	A	G	2: 59,707,009 (GRCm39)		probably null	Het
Zfp799	A	G	17: 33,040,009 (GRCm39)	W85R	possibly damaging	Het
Zfp839	A	T	12: 110,825,203 (GRCm39)		probably benign	Het

Other mutations in Grik3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01135:Grik3	APN	4	125,526,208 (GRCm39)	missense	probably benign
IGL01534:Grik3	APN	4	125,579,983 (GRCm39)	missense	probably damaging	1.00
IGL01538:Grik3	APN	4	125,587,829 (GRCm39)	missense	possibly damaging	0.90
IGL02276:Grik3	APN	4	125,517,295 (GRCm39)	missense	possibly damaging	0.86
IGL02323:Grik3	APN	4	125,579,783 (GRCm39)	splice site	probably benign
IGL02475:Grik3	APN	4	125,544,310 (GRCm39)	missense	probably benign
IGL03198:Grik3	APN	4	125,553,555 (GRCm39)	missense	probably benign	0.25
IGL03307:Grik3	APN	4	125,535,347 (GRCm39)	missense	possibly damaging	0.91
R0054:Grik3	UTSW	4	125,517,368 (GRCm39)	missense	probably damaging	1.00
R0054:Grik3	UTSW	4	125,517,368 (GRCm39)	missense	probably damaging	1.00
R0208:Grik3	UTSW	4	125,579,958 (GRCm39)	missense	probably damaging	1.00
R0497:Grik3	UTSW	4	125,517,303 (GRCm39)	missense	possibly damaging	0.82
R1295:Grik3	UTSW	4	125,598,357 (GRCm39)	splice site	probably benign
R1296:Grik3	UTSW	4	125,598,357 (GRCm39)	splice site	probably benign
R1515:Grik3	UTSW	4	125,564,521 (GRCm39)	missense	probably benign	0.37
R1559:Grik3	UTSW	4	125,601,790 (GRCm39)	missense	probably benign	0.16
R1617:Grik3	UTSW	4	125,584,985 (GRCm39)	missense	probably benign
R1848:Grik3	UTSW	4	125,587,931 (GRCm39)	missense	probably damaging	1.00
R2903:Grik3	UTSW	4	125,564,437 (GRCm39)	missense	probably damaging	1.00
R3440:Grik3	UTSW	4	125,587,764 (GRCm39)	missense	probably damaging	1.00
R3440:Grik3	UTSW	4	125,587,763 (GRCm39)	missense	probably damaging	1.00
R3442:Grik3	UTSW	4	125,587,764 (GRCm39)	missense	probably damaging	1.00
R3442:Grik3	UTSW	4	125,587,763 (GRCm39)	missense	probably damaging	1.00
R3842:Grik3	UTSW	4	125,587,747 (GRCm39)	splice site	probably benign
R4649:Grik3	UTSW	4	125,544,278 (GRCm39)	missense	probably damaging	1.00
R4841:Grik3	UTSW	4	125,584,969 (GRCm39)	missense	probably damaging	1.00
R4842:Grik3	UTSW	4	125,584,969 (GRCm39)	missense	probably damaging	1.00
R5093:Grik3	UTSW	4	125,564,382 (GRCm39)	missense	probably benign
R5318:Grik3	UTSW	4	125,587,929 (GRCm39)	missense	probably damaging	0.96
R5549:Grik3	UTSW	4	125,579,838 (GRCm39)	missense	possibly damaging	0.95
R6221:Grik3	UTSW	4	125,598,916 (GRCm39)	missense	probably damaging	0.99
R6226:Grik3	UTSW	4	125,553,582 (GRCm39)	missense	probably benign	0.04
R6306:Grik3	UTSW	4	125,526,205 (GRCm39)	missense	probably benign	0.01
R6672:Grik3	UTSW	4	125,517,309 (GRCm39)	missense	probably benign	0.08
R6682:Grik3	UTSW	4	125,544,259 (GRCm39)	missense	probably damaging	1.00
R6783:Grik3	UTSW	4	125,526,093 (GRCm39)	missense	probably benign	0.01
R7390:Grik3	UTSW	4	125,543,532 (GRCm39)	missense	probably damaging	1.00
R7604:Grik3	UTSW	4	125,517,428 (GRCm39)	missense	probably damaging	0.97
R7790:Grik3	UTSW	4	125,579,812 (GRCm39)	missense	probably damaging	1.00
R7822:Grik3	UTSW	4	125,550,190 (GRCm39)	critical splice donor site	probably null
R7952:Grik3	UTSW	4	125,598,340 (GRCm39)	missense	probably damaging	1.00
R8418:Grik3	UTSW	4	125,579,835 (GRCm39)	missense	possibly damaging	0.95
R8769:Grik3	UTSW	4	125,550,166 (GRCm39)	missense	probably damaging	1.00
R9030:Grik3	UTSW	4	125,526,185 (GRCm39)	missense	probably benign	0.24
R9243:Grik3	UTSW	4	125,601,690 (GRCm39)	missense	probably benign	0.00
R9792:Grik3	UTSW	4	125,526,315 (GRCm39)	missense	probably damaging	0.97
R9793:Grik3	UTSW	4	125,526,315 (GRCm39)	missense	probably damaging	0.97
Z1177:Grik3	UTSW	4	125,544,299 (GRCm39)	missense	possibly damaging	0.92

Predicted Primers

PCR Primer
(F):5'- TAGACCTCTAGCCTCCACATGAGC -3'
(R):5'- TGGCACTTCACTAGAACCGTCCAC -3'

Sequencing Primer
(F):5'- cacacacacacacatgcc -3'
(R):5'- GTCAATGAGTTCCTTGACCATGC -3'

Posted On

2013-04-11