Incidental Mutation 'R0116:Papss2'
ID 20853
Institutional Source Beutler Lab
Gene Symbol Papss2
Ensembl Gene ENSMUSG00000024899
Gene Name 3'-phosphoadenosine 5'-phosphosulfate synthase 2
Synonyms Sk2, Atpsk2, 1810018P12Rik
MMRRC Submission 038402-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.180) question?
Stock # R0116 (G1)
Quality Score 225
Status Not validated
Chromosome 19
Chromosomal Location 32573190-32644587 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) C to T at 32615768 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Stop codon at position 167 (R167*)
Ref Sequence ENSEMBL: ENSMUSP00000025833 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000025833]
AlphaFold O88428
Predicted Effect probably null
Transcript: ENSMUST00000025833
AA Change: R167*
SMART Domains Protein: ENSMUSP00000025833
Gene: ENSMUSG00000024899
AA Change: R167*

DomainStartEndE-ValueType
Pfam:APS_kinase 42 200 2.3e-74 PFAM
low complexity region 204 214 N/A INTRINSIC
Pfam:PUA_2 216 382 4e-52 PFAM
Pfam:ATP-sulfurylase 390 613 1.9e-70 PFAM
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.7%
  • 20x: 94.2%
Validation Efficiency 94% (95/101)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Sulfation is a common modification of endogenous (lipids, proteins, and carbohydrates) and exogenous (xenobiotics and drugs) compounds. In mammals, the sulfate source is 3'-phosphoadenosine 5'-phosphosulfate (PAPS), created from ATP and inorganic sulfate. Two different tissue isoforms encoded by different genes synthesize PAPS. This gene encodes one of the two PAPS synthetases. Defects in this gene cause the Pakistani type of spondyloepimetaphyseal dysplasia. Two alternatively spliced transcript variants that encode different isoforms have been described for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for mutation s in this gene display delayed growth and shorter limbs and other abnormalities in bone formation. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 95 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4931406C07Rik A T 9: 15,202,066 (GRCm39) V152E probably damaging Het
Abca5 T G 11: 110,167,331 (GRCm39) E1495A probably damaging Het
Abcc12 G A 8: 87,261,627 (GRCm39) S668F probably benign Het
Adgrl4 A T 3: 151,223,247 (GRCm39) T608S probably benign Het
Angel2 G A 1: 190,673,187 (GRCm39) D255N probably benign Het
Apob T A 12: 8,039,113 (GRCm39) probably benign Het
Arfgef2 A T 2: 166,715,603 (GRCm39) R1349S probably damaging Het
Atp2b2 C T 6: 113,770,656 (GRCm39) V418I probably damaging Het
Birc6 C A 17: 74,930,741 (GRCm39) probably benign Het
Capn13 T A 17: 73,658,519 (GRCm39) Y183F probably damaging Het
Cngb1 A G 8: 95,987,266 (GRCm39) S352P probably damaging Het
Col6a3 A G 1: 90,741,273 (GRCm39) S720P probably damaging Het
Cpa4 C T 6: 30,579,657 (GRCm39) R155W probably damaging Het
Dapk1 A G 13: 60,908,914 (GRCm39) I1176V probably benign Het
Dnah17 T C 11: 117,949,132 (GRCm39) E2959G probably benign Het
Dnah7b T A 1: 46,252,520 (GRCm39) I1734N possibly damaging Het
Dnajb7 A G 15: 81,291,555 (GRCm39) Y261H probably benign Het
Dock2 T C 11: 34,579,392 (GRCm39) probably benign Het
Dyrk3 A T 1: 131,057,576 (GRCm39) V199E probably damaging Het
F2r G T 13: 95,740,994 (GRCm39) C180* probably null Het
F5 A G 1: 164,012,483 (GRCm39) S466G probably benign Het
Fbn2 A T 18: 58,235,445 (GRCm39) C677* probably null Het
Fbxo41 A G 6: 85,454,890 (GRCm39) S673P probably damaging Het
Fhad1 G T 4: 141,667,406 (GRCm39) H639N probably benign Het
Fmnl3 G C 15: 99,220,619 (GRCm39) probably benign Het
Foxa2 A G 2: 147,885,481 (GRCm39) S270P probably damaging Het
Fxyd7 C T 7: 30,746,793 (GRCm39) probably null Het
Gm5225 A G 17: 24,243,032 (GRCm39) D67G probably benign Het
Grik3 G A 4: 125,564,349 (GRCm39) E444K probably benign Het
Gsdma2 A G 11: 98,540,009 (GRCm39) K44E probably damaging Het
Haus1 T A 18: 77,849,770 (GRCm39) K130* probably null Het
Heg1 A G 16: 33,556,028 (GRCm39) probably benign Het
Hormad2 A G 11: 4,362,206 (GRCm39) probably benign Het
Hsd17b3 G A 13: 64,206,403 (GRCm39) R300C possibly damaging Het
Irf5 T C 6: 29,536,108 (GRCm39) F374S probably damaging Het
Itch A G 2: 155,059,903 (GRCm39) probably benign Het
Jade2 A T 11: 51,722,136 (GRCm39) L139Q probably damaging Het
Kif5c G A 2: 49,642,251 (GRCm39) probably benign Het
Lama1 T C 17: 68,083,918 (GRCm39) Y1387H probably benign Het
Larp4b A G 13: 9,220,724 (GRCm39) R658G probably damaging Het
Mcph1 C T 8: 18,838,264 (GRCm39) L729F probably benign Het
Me1 A T 9: 86,536,720 (GRCm39) N118K probably benign Het
Med13 A G 11: 86,210,723 (GRCm39) L473S probably damaging Het
Mgam T A 6: 40,635,921 (GRCm39) Y359N probably damaging Het
Morc2b A G 17: 33,356,015 (GRCm39) S586P probably damaging Het
Mthfr A G 4: 148,135,980 (GRCm39) D310G probably benign Het
Mtmr7 A T 8: 41,034,447 (GRCm39) probably benign Het
Mtus1 A G 8: 41,451,514 (GRCm39) probably benign Het
Mus81 G T 19: 5,536,552 (GRCm39) A138D probably damaging Het
Myom2 A T 8: 15,167,633 (GRCm39) I1073F probably damaging Het
Nhsl1 A T 10: 18,400,990 (GRCm39) K739* probably null Het
Nlrp4d T A 7: 10,108,818 (GRCm39) K762N probably benign Het
Nrap T C 19: 56,343,978 (GRCm39) Y724C probably damaging Het
Ogn A T 13: 49,774,514 (GRCm39) Y219F possibly damaging Het
Or6c212 T A 10: 129,558,846 (GRCm39) D189V probably damaging Het
Or8b56 T C 9: 38,739,860 (GRCm39) L291P probably damaging Het
Or8g30 A T 9: 39,230,160 (GRCm39) I250N probably damaging Het
Padi2 T C 4: 140,653,550 (GRCm39) V180A probably benign Het
Pcbp2 T C 15: 102,382,670 (GRCm39) probably benign Het
Per1 T A 11: 68,992,706 (GRCm39) probably benign Het
Pik3ca T C 3: 32,514,094 (GRCm39) I860T probably damaging Het
Pkdrej G A 15: 85,701,746 (GRCm39) Q1397* probably null Het
Plce1 T C 19: 38,710,265 (GRCm39) V1133A probably benign Het
Pnma8a T G 7: 16,694,625 (GRCm39) V160G probably damaging Het
Prss12 T C 3: 123,276,423 (GRCm39) C351R probably damaging Het
Qprt A T 7: 126,708,269 (GRCm39) L54Q probably damaging Het
Raf1 C T 6: 115,603,344 (GRCm39) S165N probably damaging Het
Rere A G 4: 150,701,433 (GRCm39) N1271S probably benign Het
Rnasel T A 1: 153,630,258 (GRCm39) L258H probably damaging Het
Ryr2 T C 13: 11,724,807 (GRCm39) D2502G probably damaging Het
Ryr3 G A 2: 112,633,510 (GRCm39) S2081L probably damaging Het
Sc5d G T 9: 42,171,155 (GRCm39) Y11* probably null Het
Slc25a29 A C 12: 108,793,017 (GRCm39) L187R possibly damaging Het
Slc2a7 G A 4: 150,252,721 (GRCm39) V454M probably benign Het
Slco1b2 A T 6: 141,615,114 (GRCm39) T340S probably benign Het
Smarcc1 A G 9: 109,976,172 (GRCm39) N153S possibly damaging Het
Snx1 C A 9: 65,995,821 (GRCm39) E516* probably null Het
Sptlc2 T C 12: 87,403,454 (GRCm39) D115G probably benign Het
Stard9 A G 2: 120,464,736 (GRCm39) N67S probably damaging Het
Styxl2 A C 1: 165,927,270 (GRCm39) S781A probably benign Het
Swap70 G A 7: 109,872,489 (GRCm39) R368H probably benign Het
Tcaf3 T C 6: 42,568,284 (GRCm39) K691E probably benign Het
Tmco4 T C 4: 138,781,231 (GRCm39) F465S probably damaging Het
Tmem245 A G 4: 56,926,213 (GRCm39) S290P probably benign Het
Top2a T C 11: 98,894,416 (GRCm39) T972A probably benign Het
Tpr T A 1: 150,285,898 (GRCm39) S527R probably damaging Het
Traf2 T C 2: 25,409,621 (GRCm39) D443G probably damaging Het
Trim40 A T 17: 37,194,039 (GRCm39) probably null Het
Trim42 A T 9: 97,245,456 (GRCm39) I448N possibly damaging Het
Ttll9 G A 2: 152,825,054 (GRCm39) V78M probably damaging Het
Vav1 C T 17: 57,603,039 (GRCm39) L88F probably damaging Het
Vps13b A G 15: 35,423,301 (GRCm39) D207G probably damaging Het
Wdsub1 A G 2: 59,707,009 (GRCm39) probably null Het
Zfp799 A G 17: 33,040,009 (GRCm39) W85R possibly damaging Het
Zfp839 A T 12: 110,825,203 (GRCm39) probably benign Het
Other mutations in Papss2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01597:Papss2 APN 19 32,615,658 (GRCm39) missense probably damaging 1.00
IGL01646:Papss2 APN 19 32,629,482 (GRCm39) missense probably benign
IGL02052:Papss2 APN 19 32,637,983 (GRCm39) missense possibly damaging 0.92
IGL02631:Papss2 APN 19 32,611,404 (GRCm39) splice site probably benign
diablo UTSW 19 32,615,760 (GRCm39) missense probably damaging 1.00
R0091:Papss2 UTSW 19 32,611,302 (GRCm39) missense possibly damaging 0.94
R0708:Papss2 UTSW 19 32,614,616 (GRCm39) missense probably damaging 0.97
R1336:Papss2 UTSW 19 32,615,715 (GRCm39) missense possibly damaging 0.73
R1488:Papss2 UTSW 19 32,614,490 (GRCm39) missense probably benign 0.02
R1931:Papss2 UTSW 19 32,616,368 (GRCm39) nonsense probably null
R4025:Papss2 UTSW 19 32,629,323 (GRCm39) missense probably damaging 0.98
R4369:Papss2 UTSW 19 32,618,791 (GRCm39) missense probably damaging 1.00
R4762:Papss2 UTSW 19 32,616,378 (GRCm39) missense probably benign 0.05
R5235:Papss2 UTSW 19 32,616,619 (GRCm39) missense probably benign 0.00
R5294:Papss2 UTSW 19 32,616,400 (GRCm39) missense probably benign 0.03
R5320:Papss2 UTSW 19 32,615,787 (GRCm39) missense probably damaging 1.00
R5721:Papss2 UTSW 19 32,638,064 (GRCm39) missense probably damaging 1.00
R5768:Papss2 UTSW 19 32,638,119 (GRCm39) splice site probably null
R5982:Papss2 UTSW 19 32,616,636 (GRCm39) missense probably benign
R6124:Papss2 UTSW 19 32,614,528 (GRCm39) missense probably damaging 1.00
R6395:Papss2 UTSW 19 32,641,876 (GRCm39) missense probably damaging 1.00
R6546:Papss2 UTSW 19 32,640,548 (GRCm39) missense possibly damaging 0.78
R6571:Papss2 UTSW 19 32,629,342 (GRCm39) splice site probably null
R7055:Papss2 UTSW 19 32,641,827 (GRCm39) missense probably damaging 1.00
R7315:Papss2 UTSW 19 32,616,625 (GRCm39) missense possibly damaging 0.60
R7726:Papss2 UTSW 19 32,611,403 (GRCm39) splice site probably null
R7753:Papss2 UTSW 19 32,597,579 (GRCm39) missense probably benign 0.00
R7991:Papss2 UTSW 19 32,629,403 (GRCm39) missense possibly damaging 0.93
R8155:Papss2 UTSW 19 32,618,742 (GRCm39) missense probably benign 0.24
R8275:Papss2 UTSW 19 32,615,760 (GRCm39) missense probably damaging 1.00
R9135:Papss2 UTSW 19 32,618,764 (GRCm39) missense probably damaging 1.00
R9425:Papss2 UTSW 19 32,615,750 (GRCm39) missense possibly damaging 0.61
X0028:Papss2 UTSW 19 32,615,795 (GRCm39) splice site probably null
Predicted Primers PCR Primer
(F):5'- TGTGCCTATGAGAGGGACATCTCTG -3'
(R):5'- CGACCATTCTGAACACACTGAGCG -3'

Sequencing Primer
(F):5'- tctcttcatcctgcttctactttc -3'
(R):5'- TAACTTTCAGAGGCGCTGCT -3'
Posted On 2013-04-11