Mutagenetix > Incidental Mutation

Incidental Mutation 'R1867:Rai14'

208872

Institutional Source

Beutler Lab

Gene Symbol

Rai14

Ensembl Gene

ENSMUSG00000022246

Gene Name

retinoic acid induced 14

Synonyms

1700020L11Rik, Ankycorbin, 1700008J19Rik, Norpeg

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.639) question?

Stock #

R1867 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

10569055-10714710 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 10633314 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Histidine at position 25 (Q25H)

Ref Sequence

ENSEMBL: ENSMUSP00000126325 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000090339] [ENSMUST00000169385] [ENSMUST00000227506]

AlphaFold

Q9EP71

Predicted Effect

probably damaging
Transcript: ENSMUST00000090339
AA Change: Q25H

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000087815
Gene: ENSMUSG00000022246
AA Change: Q25H

Domain	Start	End	E-Value	Type
Blast:ANK	18	48	4e-10	BLAST
ANK	52	81	1.66e-6	SMART
ANK	85	117	7.02e-5	SMART
ANK	118	147	2.1e-3	SMART
ANK	151	180	2.16e-5	SMART
ANK	184	213	2.85e-5	SMART
ANK	217	247	9.33e2	SMART
low complexity region	343	357	N/A	INTRINSIC
Blast:HAMP	595	646	6e-19	BLAST
low complexity region	897	931	N/A	INTRINSIC
Blast:ANK	944	977	6e-13	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000169385
AA Change: Q25H

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000126325
Gene: ENSMUSG00000022246
AA Change: Q25H

Domain	Start	End	E-Value	Type
Blast:ANK	18	48	4e-10	BLAST
ANK	52	81	1.66e-6	SMART
ANK	85	117	7.02e-5	SMART
ANK	118	147	2.1e-3	SMART
ANK	151	180	2.16e-5	SMART
ANK	184	213	2.85e-5	SMART
ANK	217	247	9.33e2	SMART
low complexity region	343	357	N/A	INTRINSIC
Blast:HAMP	595	646	6e-19	BLAST
low complexity region	897	931	N/A	INTRINSIC
Blast:ANK	944	977	6e-13	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226530

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000227464

Predicted Effect

probably damaging
Transcript: ENSMUST00000227506
AA Change: Q25H

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

Meta Mutation Damage Score

0.1157

Coding Region Coverage

1x: 97.3%
3x: 96.8%
10x: 95.3%
20x: 92.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 102 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9130230L23Rik	A	T	5: 66,157,560 (GRCm39)	M1K	probably null	Het
Abca4	T	A	3: 121,899,010 (GRCm39)	I664N	probably damaging	Het
Acin1	T	C	14: 54,881,718 (GRCm39)	D335G	probably damaging	Het
Acoxl	A	G	2: 127,719,707 (GRCm39)	Y156C	probably damaging	Het
Adamts20	A	G	15: 94,236,340 (GRCm39)	F844L	probably benign	Het
Ago1	A	G	4: 126,335,029 (GRCm39)	Y398H	probably damaging	Het
Aldob	A	G	4: 49,543,835 (GRCm39)	V49A	possibly damaging	Het
Arhgap18	A	G	10: 26,722,026 (GRCm39)	E71G	probably damaging	Het
Asb12	G	T	X: 94,513,950 (GRCm39)	H307N	probably damaging	Het
Atp2b1	T	C	10: 98,832,750 (GRCm39)	V417A	probably damaging	Het
AY358078	T	C	14: 52,037,504 (GRCm39)	M1T	probably null	Het
Bcl2l15	A	G	3: 103,745,914 (GRCm39)		probably null	Het
Brpf3	A	G	17: 29,026,342 (GRCm39)	M472V	probably benign	Het
Bsn	A	G	9: 107,983,918 (GRCm39)	S3379P	unknown	Het
Cap2	T	C	13: 46,793,555 (GRCm39)	V333A	probably damaging	Het
Cd207	T	A	6: 83,652,635 (GRCm39)	D165V	probably damaging	Het
Cfap210	A	T	2: 69,612,181 (GRCm39)		probably null	Het
Cmtr1	A	G	17: 29,893,148 (GRCm39)	T496A	probably benign	Het
Col14a1	T	A	15: 55,310,858 (GRCm39)		probably benign	Het
Cstb	A	G	10: 78,263,273 (GRCm39)	*99W	probably null	Het
Cstdc6	T	G	16: 36,142,148 (GRCm39)	D76A	possibly damaging	Het
Ddx11	G	A	17: 66,442,934 (GRCm39)		probably null	Het
Dip2c	T	C	13: 9,671,985 (GRCm39)	M990T	possibly damaging	Het
Epc2	A	G	2: 49,422,117 (GRCm39)	Y337C	probably damaging	Het
Fmn1	A	G	2: 113,539,783 (GRCm39)	E1326G	probably damaging	Het
Focad	A	T	4: 88,096,326 (GRCm39)	D236V	probably damaging	Het
Fsd1	G	A	17: 56,298,254 (GRCm39)	S193N	probably benign	Het
Gm4922	T	A	10: 18,660,211 (GRCm39)	R170S	possibly damaging	Het
Gm5129	T	C	5: 29,940,654 (GRCm39)		probably benign	Het
Gucy2d	T	A	7: 98,103,268 (GRCm39)	L504H	probably damaging	Het
Hspbap1	A	T	16: 35,621,934 (GRCm39)	Y93F	possibly damaging	Het
Iars2	A	T	1: 185,050,765 (GRCm39)	D441E	probably benign	Het
Il1rap	A	T	16: 26,541,676 (GRCm39)	H639L	probably damaging	Het
Inhbc	A	T	10: 127,193,416 (GRCm39)	V200E	probably benign	Het
Ints8	C	A	4: 11,241,684 (GRCm39)	C253F	probably damaging	Het
Intu	G	T	3: 40,618,765 (GRCm39)	G257V	probably damaging	Het
Kif23	C	A	9: 61,826,243 (GRCm39)	A929S	possibly damaging	Het
Kmt2b	A	T	7: 30,274,083 (GRCm39)	V2207E	possibly damaging	Het
Ksr2	A	C	5: 117,643,594 (GRCm39)	E121A	probably benign	Het
Lce1b	A	G	3: 92,563,318 (GRCm39)	S72P	unknown	Het
Lpl	TGG	TG	8: 69,349,254 (GRCm39)		probably null	Het
Mcmdc2	T	C	1: 10,001,030 (GRCm39)	V435A	probably damaging	Het
Mecom	A	G	3: 30,563,577 (GRCm39)		probably null	Het
Mier2	A	G	10: 79,384,664 (GRCm39)	V150A	probably damaging	Het
Mmp16	A	T	4: 18,116,013 (GRCm39)	D539V	probably benign	Het
Mpp1	A	G	X: 74,168,975 (GRCm39)		probably null	Het
Mpp2	C	T	11: 101,955,493 (GRCm39)	E86K	probably benign	Het
Mtor	T	A	4: 148,539,089 (GRCm39)	F195L	probably damaging	Het
Myo3a	T	C	2: 22,404,657 (GRCm39)	I663T	probably benign	Het
Nlrp5	G	A	7: 23,123,407 (GRCm39)	G756E	possibly damaging	Het
Nudt18	T	C	14: 70,817,335 (GRCm39)	L255P	probably damaging	Het
Nup62	T	A	7: 44,478,472 (GRCm39)	S162R	possibly damaging	Het
Oosp2	C	T	19: 11,626,959 (GRCm39)		probably null	Het
Or52n20	T	A	7: 104,320,524 (GRCm39)	I205N	possibly damaging	Het
Or6c66	A	T	10: 129,461,621 (GRCm39)	I103K	probably damaging	Het
Or7g20	G	A	9: 18,946,562 (GRCm39)	A48T	probably benign	Het
Or8h7	A	G	2: 86,720,956 (GRCm39)	S188P	probably damaging	Het
Pan2	A	G	10: 128,149,050 (GRCm39)	D506G	probably damaging	Het
Pcdh9	G	A	14: 94,125,471 (GRCm39)	S233L	probably damaging	Het
Pcdhgc5	T	G	18: 37,954,471 (GRCm39)	S582A	possibly damaging	Het
Pdik1l	T	C	4: 134,006,222 (GRCm39)	D70G	probably damaging	Het
Peg12	T	C	7: 62,113,416 (GRCm39)	H227R	probably benign	Het
Pms1	C	T	1: 53,228,546 (GRCm39)	V901I	probably benign	Het
Pnisr	C	T	4: 21,874,086 (GRCm39)		probably benign	Het
Pole	A	G	5: 110,482,063 (GRCm39)	E135G	probably benign	Het
Ppp6r2	C	A	15: 89,166,141 (GRCm39)	A715E	probably benign	Het
Prickle4	T	G	17: 48,001,044 (GRCm39)	H174P	possibly damaging	Het
Prl2a1	T	C	13: 27,988,923 (GRCm39)	L16P	probably damaging	Het
Prss32	C	T	17: 24,072,868 (GRCm39)	T33M	probably benign	Het
Psmd13	C	T	7: 140,463,430 (GRCm39)	T38I	probably damaging	Het
Rbbp6	T	C	7: 122,596,252 (GRCm39)	V598A	probably damaging	Het
Rbm34	C	A	8: 127,697,631 (GRCm39)	A27S	probably benign	Het
Rbm4b	A	G	19: 4,812,331 (GRCm39)	T247A	probably benign	Het
Riiad1	G	A	3: 94,380,176 (GRCm39)	P40S	possibly damaging	Het
Sema4f	T	C	6: 82,894,824 (GRCm39)	D457G	possibly damaging	Het
Sema6c	A	T	3: 95,078,099 (GRCm39)	I492F	probably damaging	Het
Serpina3a	A	T	12: 104,084,886 (GRCm39)	I94L	probably benign	Het
Skida1	TTGCTGCTGCTGCTGCTGCTGCTGCTG	TTGCTGCTGCTGCTGCTGCTGCTG	2: 18,051,155 (GRCm39)		probably benign	Het
Slc38a1	G	A	15: 96,485,016 (GRCm39)	T221M	probably damaging	Het
Slc6a17	T	A	3: 107,379,492 (GRCm39)	M559L	probably damaging	Het
Sntg2	T	C	12: 30,286,650 (GRCm39)	N315D	probably benign	Het
Snx10	T	A	6: 51,552,890 (GRCm39)	V11E	probably damaging	Het
Spta1	A	G	1: 174,047,405 (GRCm39)	E1683G	probably benign	Het
Ssc5d	A	T	7: 4,931,506 (GRCm39)	R238W	probably damaging	Het
Ssh1	A	T	5: 114,081,512 (GRCm39)	F617L	probably damaging	Het
Taf1	T	G	X: 100,606,563 (GRCm39)	M1254R	probably damaging	Het
Tcirg1	A	G	19: 3,948,835 (GRCm39)	L450P	probably damaging	Het
Ticam1	C	A	17: 56,578,718 (GRCm39)	A126S	probably benign	Het
Tnxb	T	A	17: 34,890,821 (GRCm39)	V388E	probably damaging	Het
Tomm5	A	G	4: 45,107,939 (GRCm39)	L32P	probably damaging	Het
Ubr5	A	T	15: 38,042,090 (GRCm39)	S169T	probably benign	Het
Usp28	T	G	9: 48,920,494 (GRCm39)	D240E	probably benign	Het
Usp34	T	C	11: 23,311,593 (GRCm39)	Y462H	possibly damaging	Het
Utp14b	C	A	1: 78,643,148 (GRCm39)	Q349K	probably damaging	Het
Utp20	G	T	10: 88,585,305 (GRCm39)	D2586E	probably benign	Het
Vmn1r173	A	G	7: 23,402,660 (GRCm39)	I298M	unknown	Het
Vmn1r37	T	A	6: 66,708,461 (GRCm39)	I29K	probably benign	Het
Vmn2r23	G	A	6: 123,679,874 (GRCm39)	G32D	probably damaging	Het
Xpo7	A	T	14: 70,931,431 (GRCm39)	F296I	probably damaging	Het
Zfhx4	A	G	3: 5,477,774 (GRCm39)	E3463G	probably damaging	Het
Zfp455	G	T	13: 67,355,509 (GRCm39)	R194L	probably benign	Het
Zfp663	T	C	2: 165,194,651 (GRCm39)	T523A	possibly damaging	Het

Other mutations in Rai14

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01107:Rai14	APN	15	10,599,797 (GRCm39)	splice site	probably benign
IGL01625:Rai14	APN	15	10,572,460 (GRCm39)	missense	probably benign	0.30
IGL01925:Rai14	APN	15	10,595,948 (GRCm39)	missense	possibly damaging	0.88
IGL02053:Rai14	APN	15	10,633,242 (GRCm39)	missense	probably benign	0.00
IGL02531:Rai14	APN	15	10,574,868 (GRCm39)	missense	probably damaging	1.00
IGL02748:Rai14	APN	15	10,589,421 (GRCm39)	missense	probably benign	0.14
IGL02945:Rai14	APN	15	10,574,795 (GRCm39)	missense	probably benign	0.00
PIT4618001:Rai14	UTSW	15	10,575,242 (GRCm39)	missense	probably damaging	1.00
R1400:Rai14	UTSW	15	10,571,634 (GRCm39)	missense	probably damaging	0.98
R1583:Rai14	UTSW	15	10,588,002 (GRCm39)	missense	probably damaging	1.00
R1686:Rai14	UTSW	15	10,592,282 (GRCm39)	missense	probably damaging	0.98
R1721:Rai14	UTSW	15	10,633,314 (GRCm39)	missense	probably damaging	1.00
R1868:Rai14	UTSW	15	10,633,314 (GRCm39)	missense	probably damaging	1.00
R1998:Rai14	UTSW	15	10,595,067 (GRCm39)	splice site	probably null
R2118:Rai14	UTSW	15	10,575,252 (GRCm39)	missense	probably benign	0.00
R3161:Rai14	UTSW	15	10,633,250 (GRCm39)	missense	possibly damaging	0.74
R3162:Rai14	UTSW	15	10,633,250 (GRCm39)	missense	possibly damaging	0.74
R3162:Rai14	UTSW	15	10,633,250 (GRCm39)	missense	possibly damaging	0.74
R4049:Rai14	UTSW	15	10,592,298 (GRCm39)	missense	probably benign	0.30
R4611:Rai14	UTSW	15	10,592,224 (GRCm39)	missense	probably damaging	1.00
R4760:Rai14	UTSW	15	10,575,776 (GRCm39)	missense	possibly damaging	0.60
R4863:Rai14	UTSW	15	10,572,556 (GRCm39)	missense	probably damaging	0.99
R5022:Rai14	UTSW	15	10,574,592 (GRCm39)	missense	probably damaging	0.96
R5110:Rai14	UTSW	15	10,690,496 (GRCm39)	start gained	probably benign
R5410:Rai14	UTSW	15	10,575,024 (GRCm39)	missense	probably damaging	1.00
R5643:Rai14	UTSW	15	10,593,137 (GRCm39)	missense	probably benign	0.03
R5644:Rai14	UTSW	15	10,593,137 (GRCm39)	missense	probably benign	0.03
R5681:Rai14	UTSW	15	10,575,206 (GRCm39)	missense	probably damaging	1.00
R5934:Rai14	UTSW	15	10,575,245 (GRCm39)	missense	probably damaging	0.98
R6333:Rai14	UTSW	15	10,575,022 (GRCm39)	nonsense	probably null
R6338:Rai14	UTSW	15	10,575,062 (GRCm39)	missense	probably damaging	1.00
R6864:Rai14	UTSW	15	10,633,254 (GRCm39)	missense	possibly damaging	0.95
R7015:Rai14	UTSW	15	10,589,401 (GRCm39)	nonsense	probably null
R7155:Rai14	UTSW	15	10,595,089 (GRCm39)	missense	possibly damaging	0.53
R7480:Rai14	UTSW	15	10,571,622 (GRCm39)	missense	probably benign	0.02
R7574:Rai14	UTSW	15	10,593,189 (GRCm39)	missense	probably damaging	1.00
R7578:Rai14	UTSW	15	10,593,189 (GRCm39)	missense	probably damaging	1.00
R7578:Rai14	UTSW	15	10,574,914 (GRCm39)	missense	probably benign
R7597:Rai14	UTSW	15	10,574,937 (GRCm39)	missense	possibly damaging	0.94
R7658:Rai14	UTSW	15	10,593,189 (GRCm39)	missense	probably damaging	1.00
R7779:Rai14	UTSW	15	10,593,112 (GRCm39)	missense	probably damaging	1.00
R7946:Rai14	UTSW	15	10,574,287 (GRCm39)	splice site	probably null
R8171:Rai14	UTSW	15	10,633,249 (GRCm39)	missense	probably damaging	1.00
R8195:Rai14	UTSW	15	10,575,302 (GRCm39)	missense	probably benign
R8471:Rai14	UTSW	15	10,575,245 (GRCm39)	missense	probably benign	0.01
R8485:Rai14	UTSW	15	10,575,122 (GRCm39)	missense	probably damaging	1.00
R9075:Rai14	UTSW	15	10,589,403 (GRCm39)	missense	probably damaging	1.00
R9287:Rai14	UTSW	15	10,592,204 (GRCm39)	missense	probably benign	0.14
R9502:Rai14	UTSW	15	10,587,947 (GRCm39)	missense	possibly damaging	0.50
R9603:Rai14	UTSW	15	10,595,116 (GRCm39)	nonsense	probably null
R9665:Rai14	UTSW	15	10,574,803 (GRCm39)	missense	probably damaging	1.00
R9767:Rai14	UTSW	15	10,610,127 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- CTCCCCTTGATGAATAAGTCAGC -3'
(R):5'- TGGGAAAGCTAGCCTTCTTGG -3'

Sequencing Primer
(F):5'- TGAATAAGTCAGCATTTCGGGG -3'
(R):5'- GAAAGCTAGCCTTCTTGGTTGTTCC -3'

Posted On

2014-06-30