Incidental Mutation 'R1884:Vmn2r60'
ID |
209348 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn2r60
|
Ensembl Gene |
ENSMUSG00000090619 |
Gene Name |
vomeronasal 2, receptor 60 |
Synonyms |
Casr-rs3, EG637898, Gprc2a-rs3 |
MMRRC Submission |
039905-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.100)
|
Stock # |
R1884 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
7 |
Chromosomal Location |
41765895-41845200 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 41786094 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Valine to Alanine
at position 299
(V299A)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000128493
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000166447]
|
AlphaFold |
A0A3B2WBC8 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000166447
AA Change: V299A
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
SMART Domains |
Protein: ENSMUSP00000128493 Gene: ENSMUSG00000090619 AA Change: V299A
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
18 |
N/A |
INTRINSIC |
Pfam:ANF_receptor
|
78 |
471 |
1.2e-44 |
PFAM |
Pfam:NCD3G
|
514 |
567 |
5.1e-23 |
PFAM |
Pfam:7tm_3
|
600 |
835 |
1.4e-51 |
PFAM |
|
Meta Mutation Damage Score |
0.6467 |
Coding Region Coverage |
- 1x: 97.3%
- 3x: 96.7%
- 10x: 95.1%
- 20x: 92.3%
|
Validation Efficiency |
99% (94/95) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 78 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Acad11 |
T |
C |
9: 103,991,684 (GRCm39) |
M573T |
probably benign |
Het |
Ank3 |
A |
G |
10: 69,851,422 (GRCm39) |
T1162A |
possibly damaging |
Het |
Anxa2 |
TCCC |
TCC |
9: 69,397,036 (GRCm39) |
|
probably null |
Het |
Arpp21 |
T |
A |
9: 111,972,595 (GRCm39) |
D232V |
probably damaging |
Het |
Atg2a |
T |
C |
19: 6,304,414 (GRCm39) |
Y1144H |
probably damaging |
Het |
Auh |
G |
A |
13: 52,989,532 (GRCm39) |
P308L |
probably benign |
Het |
Brs3 |
T |
C |
X: 56,092,449 (GRCm39) |
I311T |
probably benign |
Het |
Cenpf |
C |
T |
1: 189,379,046 (GRCm39) |
V2915I |
probably benign |
Het |
Cep170 |
G |
T |
1: 176,602,245 (GRCm39) |
T287K |
probably benign |
Het |
Chst2 |
G |
A |
9: 95,287,611 (GRCm39) |
T245I |
probably damaging |
Het |
Cnot4 |
C |
T |
6: 35,055,092 (GRCm39) |
V66I |
probably damaging |
Het |
Cntn4 |
A |
G |
6: 106,656,353 (GRCm39) |
T885A |
probably benign |
Het |
Col20a1 |
C |
T |
2: 180,634,703 (GRCm39) |
T131I |
possibly damaging |
Het |
Coro7 |
G |
T |
16: 4,446,683 (GRCm39) |
|
probably benign |
Het |
Cpne8 |
C |
A |
15: 90,532,831 (GRCm39) |
|
probably benign |
Het |
Dbnl |
G |
A |
11: 5,749,247 (GRCm39) |
G356E |
probably benign |
Het |
Ddx31 |
T |
A |
2: 28,749,002 (GRCm39) |
I266N |
probably damaging |
Het |
Dnah7a |
A |
T |
1: 53,580,159 (GRCm39) |
I1592N |
probably damaging |
Het |
Dok6 |
A |
T |
18: 89,492,130 (GRCm39) |
L149Q |
probably damaging |
Het |
Eri2 |
G |
A |
7: 119,390,346 (GRCm39) |
T94I |
probably benign |
Het |
Ermp1 |
A |
G |
19: 29,594,079 (GRCm39) |
V697A |
probably benign |
Het |
Foxc1 |
C |
T |
13: 31,991,648 (GRCm39) |
T153M |
probably damaging |
Het |
Fry |
A |
G |
5: 150,326,985 (GRCm39) |
I1224V |
probably benign |
Het |
Fzd5 |
G |
A |
1: 64,774,813 (GRCm39) |
T316M |
probably damaging |
Het |
Gcm1 |
G |
T |
9: 77,966,861 (GRCm39) |
V27L |
probably benign |
Het |
Gm5773 |
A |
T |
3: 93,681,348 (GRCm39) |
D340V |
probably benign |
Het |
Gucy2d |
T |
A |
7: 98,100,815 (GRCm39) |
H379Q |
probably benign |
Het |
Hectd1 |
T |
A |
12: 51,847,738 (GRCm39) |
M392L |
probably benign |
Het |
Itpr2 |
A |
C |
6: 146,287,469 (GRCm39) |
D452E |
probably benign |
Het |
Krtap2-4 |
G |
C |
11: 99,505,505 (GRCm39) |
|
probably benign |
Het |
Lrit1 |
T |
C |
14: 36,783,710 (GRCm39) |
V346A |
possibly damaging |
Het |
Lrrk1 |
A |
G |
7: 65,912,185 (GRCm39) |
S1792P |
probably benign |
Het |
Marveld2 |
A |
T |
13: 100,737,129 (GRCm39) |
V168E |
probably benign |
Het |
Ms4a4b |
T |
A |
19: 11,438,629 (GRCm39) |
D149E |
probably damaging |
Het |
Myom2 |
G |
A |
8: 15,164,278 (GRCm39) |
D1058N |
probably benign |
Het |
Ncam2 |
C |
T |
16: 81,234,571 (GRCm39) |
P142L |
probably damaging |
Het |
Nek9 |
A |
G |
12: 85,379,330 (GRCm39) |
L192P |
probably damaging |
Het |
Nol10 |
T |
C |
12: 17,418,390 (GRCm39) |
|
probably null |
Het |
Nrcam |
T |
C |
12: 44,591,538 (GRCm39) |
V194A |
probably damaging |
Het |
Nudt6 |
A |
G |
3: 37,466,549 (GRCm39) |
V82A |
probably benign |
Het |
Odf2l |
A |
T |
3: 144,856,809 (GRCm39) |
N492I |
probably damaging |
Het |
Or2a12 |
T |
C |
6: 42,904,764 (GRCm39) |
S200P |
probably damaging |
Het |
Or51f1d |
T |
C |
7: 102,701,189 (GRCm39) |
I228T |
probably benign |
Het |
Pkn3 |
T |
C |
2: 29,972,840 (GRCm39) |
V276A |
probably damaging |
Het |
Prl3b1 |
T |
G |
13: 27,431,886 (GRCm39) |
L137R |
possibly damaging |
Het |
Rab11fip2 |
A |
G |
19: 59,925,762 (GRCm39) |
F10L |
probably damaging |
Het |
Rab3b |
T |
A |
4: 108,786,649 (GRCm39) |
V133E |
probably damaging |
Het |
Rnf111 |
A |
T |
9: 70,383,520 (GRCm39) |
S138T |
probably damaging |
Het |
Rsf1 |
G |
A |
7: 97,229,117 (GRCm39) |
|
probably benign |
Het |
Runx1t1 |
A |
G |
4: 13,835,767 (GRCm39) |
T75A |
probably benign |
Het |
Ryr2 |
T |
G |
13: 11,753,242 (GRCm39) |
K1693T |
probably damaging |
Het |
Sdha |
A |
T |
13: 74,481,255 (GRCm39) |
I317N |
probably damaging |
Het |
Serpina1d |
T |
A |
12: 103,732,037 (GRCm39) |
D274V |
possibly damaging |
Het |
Setd2 |
T |
G |
9: 110,385,486 (GRCm39) |
|
probably null |
Het |
Sh3tc2 |
A |
G |
18: 62,141,646 (GRCm39) |
Y1109C |
probably damaging |
Het |
Sik3 |
C |
G |
9: 46,132,387 (GRCm39) |
H1276Q |
probably benign |
Het |
Slc22a2 |
A |
G |
17: 12,833,713 (GRCm39) |
|
probably benign |
Het |
Slc35f4 |
A |
T |
14: 49,551,091 (GRCm39) |
W108R |
probably damaging |
Het |
Slc4a1ap |
A |
G |
5: 31,691,524 (GRCm39) |
E440G |
probably damaging |
Het |
Slc6a4 |
A |
G |
11: 76,904,201 (GRCm39) |
T219A |
probably benign |
Het |
Stxbp5 |
C |
A |
10: 9,688,042 (GRCm39) |
V420F |
possibly damaging |
Het |
Svil |
T |
G |
18: 5,094,640 (GRCm39) |
V1440G |
possibly damaging |
Het |
Tas2r126 |
A |
T |
6: 42,411,961 (GRCm39) |
T165S |
probably benign |
Het |
Tbck |
T |
C |
3: 132,430,677 (GRCm39) |
|
probably null |
Het |
Tnxb |
T |
A |
17: 34,908,539 (GRCm39) |
D1520E |
probably benign |
Het |
Top1mt |
C |
T |
15: 75,539,750 (GRCm39) |
R287H |
possibly damaging |
Het |
Trdn |
A |
G |
10: 33,133,091 (GRCm39) |
K314E |
probably benign |
Het |
Troap |
T |
A |
15: 98,975,779 (GRCm39) |
C233S |
probably benign |
Het |
Usp28 |
T |
C |
9: 48,947,247 (GRCm39) |
M571T |
probably damaging |
Het |
Vac14 |
A |
G |
8: 111,438,319 (GRCm39) |
H644R |
probably damaging |
Het |
Vipr1 |
C |
T |
9: 121,494,930 (GRCm39) |
P327L |
possibly damaging |
Het |
Vmn1r31 |
C |
T |
6: 58,449,029 (GRCm39) |
V279I |
probably damaging |
Het |
Vmn1r69 |
G |
A |
7: 10,314,678 (GRCm39) |
R18W |
probably benign |
Het |
Vmn2r18 |
G |
T |
5: 151,499,190 (GRCm39) |
Q425K |
probably benign |
Het |
Vps13b |
A |
T |
15: 35,430,437 (GRCm39) |
|
probably benign |
Het |
Zfp157 |
A |
G |
5: 138,443,102 (GRCm39) |
D31G |
probably damaging |
Het |
Zfp385c |
A |
C |
11: 100,521,532 (GRCm39) |
V176G |
probably benign |
Het |
Zfp831 |
A |
G |
2: 174,545,870 (GRCm39) |
H1325R |
possibly damaging |
Het |
|
Other mutations in Vmn2r60 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01622:Vmn2r60
|
APN |
7 |
41,785,910 (GRCm39) |
missense |
probably benign |
0.09 |
IGL01623:Vmn2r60
|
APN |
7 |
41,785,910 (GRCm39) |
missense |
probably benign |
0.09 |
IGL02363:Vmn2r60
|
APN |
7 |
41,844,578 (GRCm39) |
missense |
probably benign |
0.02 |
IGL02485:Vmn2r60
|
APN |
7 |
41,844,890 (GRCm39) |
missense |
possibly damaging |
0.54 |
IGL02651:Vmn2r60
|
APN |
7 |
41,845,010 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02660:Vmn2r60
|
APN |
7 |
41,791,720 (GRCm39) |
nonsense |
probably null |
|
IGL03135:Vmn2r60
|
APN |
7 |
41,786,018 (GRCm39) |
missense |
probably benign |
0.13 |
IGL03307:Vmn2r60
|
APN |
7 |
41,765,971 (GRCm39) |
missense |
probably benign |
0.14 |
R0310:Vmn2r60
|
UTSW |
7 |
41,844,564 (GRCm39) |
missense |
possibly damaging |
0.54 |
R0314:Vmn2r60
|
UTSW |
7 |
41,784,985 (GRCm39) |
splice site |
probably benign |
|
R0328:Vmn2r60
|
UTSW |
7 |
41,791,744 (GRCm39) |
splice site |
probably benign |
|
R0464:Vmn2r60
|
UTSW |
7 |
41,785,255 (GRCm39) |
missense |
probably damaging |
0.99 |
R0755:Vmn2r60
|
UTSW |
7 |
41,844,869 (GRCm39) |
missense |
probably damaging |
1.00 |
R1119:Vmn2r60
|
UTSW |
7 |
41,844,365 (GRCm39) |
missense |
possibly damaging |
0.68 |
R1162:Vmn2r60
|
UTSW |
7 |
41,845,195 (GRCm39) |
missense |
probably benign |
0.29 |
R1241:Vmn2r60
|
UTSW |
7 |
41,786,476 (GRCm39) |
missense |
probably benign |
0.01 |
R1404:Vmn2r60
|
UTSW |
7 |
41,786,211 (GRCm39) |
missense |
probably damaging |
0.99 |
R1404:Vmn2r60
|
UTSW |
7 |
41,786,211 (GRCm39) |
missense |
probably damaging |
0.99 |
R1488:Vmn2r60
|
UTSW |
7 |
41,786,137 (GRCm39) |
missense |
probably benign |
0.17 |
R1623:Vmn2r60
|
UTSW |
7 |
41,785,279 (GRCm39) |
nonsense |
probably null |
|
R1628:Vmn2r60
|
UTSW |
7 |
41,785,830 (GRCm39) |
nonsense |
probably null |
|
R1883:Vmn2r60
|
UTSW |
7 |
41,786,094 (GRCm39) |
missense |
probably damaging |
0.99 |
R2182:Vmn2r60
|
UTSW |
7 |
41,844,931 (GRCm39) |
missense |
probably benign |
0.06 |
R2275:Vmn2r60
|
UTSW |
7 |
41,786,251 (GRCm39) |
nonsense |
probably null |
|
R2847:Vmn2r60
|
UTSW |
7 |
41,785,857 (GRCm39) |
missense |
probably benign |
0.07 |
R2885:Vmn2r60
|
UTSW |
7 |
41,790,403 (GRCm39) |
missense |
possibly damaging |
0.91 |
R2894:Vmn2r60
|
UTSW |
7 |
41,785,220 (GRCm39) |
missense |
probably benign |
|
R2921:Vmn2r60
|
UTSW |
7 |
41,790,459 (GRCm39) |
missense |
probably damaging |
0.98 |
R2922:Vmn2r60
|
UTSW |
7 |
41,790,459 (GRCm39) |
missense |
probably damaging |
0.98 |
R3772:Vmn2r60
|
UTSW |
7 |
41,765,980 (GRCm39) |
missense |
probably benign |
0.35 |
R3820:Vmn2r60
|
UTSW |
7 |
41,785,125 (GRCm39) |
missense |
probably damaging |
0.98 |
R3822:Vmn2r60
|
UTSW |
7 |
41,785,125 (GRCm39) |
missense |
probably damaging |
0.98 |
R3872:Vmn2r60
|
UTSW |
7 |
41,785,878 (GRCm39) |
missense |
probably benign |
0.19 |
R4222:Vmn2r60
|
UTSW |
7 |
41,765,952 (GRCm39) |
missense |
probably benign |
0.08 |
R4223:Vmn2r60
|
UTSW |
7 |
41,765,952 (GRCm39) |
missense |
probably benign |
0.08 |
R4224:Vmn2r60
|
UTSW |
7 |
41,765,952 (GRCm39) |
missense |
probably benign |
0.08 |
R4526:Vmn2r60
|
UTSW |
7 |
41,844,667 (GRCm39) |
missense |
probably damaging |
0.96 |
R4547:Vmn2r60
|
UTSW |
7 |
41,785,087 (GRCm39) |
missense |
probably null |
0.54 |
R4840:Vmn2r60
|
UTSW |
7 |
41,785,285 (GRCm39) |
missense |
probably damaging |
1.00 |
R5173:Vmn2r60
|
UTSW |
7 |
41,844,935 (GRCm39) |
missense |
probably damaging |
0.97 |
R5231:Vmn2r60
|
UTSW |
7 |
41,786,448 (GRCm39) |
missense |
possibly damaging |
0.93 |
R5480:Vmn2r60
|
UTSW |
7 |
41,785,154 (GRCm39) |
missense |
probably damaging |
0.98 |
R5521:Vmn2r60
|
UTSW |
7 |
41,845,049 (GRCm39) |
missense |
probably damaging |
0.99 |
R5834:Vmn2r60
|
UTSW |
7 |
41,765,932 (GRCm39) |
missense |
probably benign |
0.17 |
R6038:Vmn2r60
|
UTSW |
7 |
41,844,386 (GRCm39) |
missense |
probably benign |
0.04 |
R6038:Vmn2r60
|
UTSW |
7 |
41,844,386 (GRCm39) |
missense |
probably benign |
0.04 |
R6112:Vmn2r60
|
UTSW |
7 |
41,844,847 (GRCm39) |
missense |
probably damaging |
1.00 |
R6149:Vmn2r60
|
UTSW |
7 |
41,786,400 (GRCm39) |
missense |
probably damaging |
1.00 |
R6170:Vmn2r60
|
UTSW |
7 |
41,785,045 (GRCm39) |
missense |
possibly damaging |
0.94 |
R6383:Vmn2r60
|
UTSW |
7 |
41,765,895 (GRCm39) |
start codon destroyed |
probably null |
0.04 |
R6811:Vmn2r60
|
UTSW |
7 |
41,844,310 (GRCm39) |
missense |
probably damaging |
1.00 |
R6876:Vmn2r60
|
UTSW |
7 |
41,785,087 (GRCm39) |
missense |
probably null |
0.54 |
R6997:Vmn2r60
|
UTSW |
7 |
41,791,716 (GRCm39) |
missense |
probably benign |
0.00 |
R7040:Vmn2r60
|
UTSW |
7 |
41,791,666 (GRCm39) |
missense |
probably benign |
0.00 |
R7116:Vmn2r60
|
UTSW |
7 |
41,786,487 (GRCm39) |
missense |
probably benign |
0.00 |
R7128:Vmn2r60
|
UTSW |
7 |
41,844,536 (GRCm39) |
missense |
probably damaging |
0.96 |
R7232:Vmn2r60
|
UTSW |
7 |
41,786,166 (GRCm39) |
missense |
possibly damaging |
0.83 |
R7296:Vmn2r60
|
UTSW |
7 |
41,785,826 (GRCm39) |
missense |
probably benign |
0.01 |
R7376:Vmn2r60
|
UTSW |
7 |
41,844,631 (GRCm39) |
missense |
probably damaging |
1.00 |
R7526:Vmn2r60
|
UTSW |
7 |
41,845,158 (GRCm39) |
frame shift |
probably null |
|
R7527:Vmn2r60
|
UTSW |
7 |
41,845,158 (GRCm39) |
frame shift |
probably null |
|
R7528:Vmn2r60
|
UTSW |
7 |
41,845,158 (GRCm39) |
frame shift |
probably null |
|
R7764:Vmn2r60
|
UTSW |
7 |
41,844,535 (GRCm39) |
missense |
probably damaging |
0.99 |
R7843:Vmn2r60
|
UTSW |
7 |
41,844,511 (GRCm39) |
missense |
probably benign |
0.00 |
R8080:Vmn2r60
|
UTSW |
7 |
41,790,521 (GRCm39) |
missense |
probably benign |
0.30 |
R8290:Vmn2r60
|
UTSW |
7 |
41,791,690 (GRCm39) |
missense |
probably damaging |
1.00 |
R8342:Vmn2r60
|
UTSW |
7 |
41,790,494 (GRCm39) |
missense |
possibly damaging |
0.63 |
R8362:Vmn2r60
|
UTSW |
7 |
41,844,954 (GRCm39) |
missense |
probably damaging |
1.00 |
R8418:Vmn2r60
|
UTSW |
7 |
41,844,850 (GRCm39) |
missense |
probably damaging |
0.97 |
R8848:Vmn2r60
|
UTSW |
7 |
41,786,169 (GRCm39) |
missense |
probably damaging |
1.00 |
R8860:Vmn2r60
|
UTSW |
7 |
41,791,654 (GRCm39) |
missense |
probably damaging |
0.99 |
R8882:Vmn2r60
|
UTSW |
7 |
41,790,518 (GRCm39) |
missense |
probably benign |
0.00 |
R8913:Vmn2r60
|
UTSW |
7 |
41,785,778 (GRCm39) |
missense |
probably benign |
0.27 |
R9190:Vmn2r60
|
UTSW |
7 |
41,844,935 (GRCm39) |
missense |
probably damaging |
0.99 |
R9229:Vmn2r60
|
UTSW |
7 |
41,791,723 (GRCm39) |
missense |
possibly damaging |
0.95 |
R9295:Vmn2r60
|
UTSW |
7 |
41,785,955 (GRCm39) |
missense |
probably benign |
0.01 |
R9335:Vmn2r60
|
UTSW |
7 |
41,844,332 (GRCm39) |
missense |
probably damaging |
1.00 |
R9796:Vmn2r60
|
UTSW |
7 |
41,785,172 (GRCm39) |
missense |
probably benign |
|
RF024:Vmn2r60
|
UTSW |
7 |
41,790,363 (GRCm39) |
missense |
probably benign |
0.01 |
X0023:Vmn2r60
|
UTSW |
7 |
41,790,538 (GRCm39) |
missense |
probably benign |
0.01 |
|
Predicted Primers |
PCR Primer
(F):5'- TGAAAATGATCTCTGGCACATG -3'
(R):5'- GTTGGCAGTTCTCCAAAAGCTG -3'
Sequencing Primer
(F):5'- ATCTCTGGCACATGGAATGC -3'
(R):5'- GGCAGTTCTCCAAAAGCTGACAATC -3'
|
Posted On |
2014-06-30 |