Mutagenetix > Incidental Mutation

Incidental Mutation 'R1884:Nol10'

209373

Institutional Source

Beutler Lab

Gene Symbol

Nol10

Ensembl Gene

ENSMUSG00000061458

Gene Name

nucleolar protein 10

Synonyms

LOC217431

MMRRC Submission

039905-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.968) question?

Stock #

R1884 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

17398459-17480096 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to C at 17418390 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000035930 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000046011] [ENSMUST00000046011] [ENSMUST00000046011]

AlphaFold

Q5RJG1

Predicted Effect

probably null
Transcript: ENSMUST00000046011

SMART Domains

Protein: ENSMUSP00000035930
Gene: ENSMUSG00000061458

Domain	Start	End	E-Value	Type
WD40	42	81	1.1e1	SMART
Blast:WD40	84	123	1e-8	BLAST
WD40	165	204	3.3e1	SMART
WD40	223	257	4.42e1	SMART
WD40	260	299	1.19e1	SMART
WD40	302	340	1.97e2	SMART
low complexity region	451	476	N/A	INTRINSIC
Pfam:NUC153	482	509	1.4e-15	PFAM
low complexity region	515	536	N/A	INTRINSIC
low complexity region	542	553	N/A	INTRINSIC
coiled coil region	557	588	N/A	INTRINSIC
low complexity region	650	660	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000046011

SMART Domains

Protein: ENSMUSP00000035930
Gene: ENSMUSG00000061458

Domain	Start	End	E-Value	Type
WD40	42	81	1.1e1	SMART
Blast:WD40	84	123	1e-8	BLAST
WD40	165	204	3.3e1	SMART
WD40	223	257	4.42e1	SMART
WD40	260	299	1.19e1	SMART
WD40	302	340	1.97e2	SMART
low complexity region	451	476	N/A	INTRINSIC
Pfam:NUC153	482	509	1.4e-15	PFAM
low complexity region	515	536	N/A	INTRINSIC
low complexity region	542	553	N/A	INTRINSIC
coiled coil region	557	588	N/A	INTRINSIC
low complexity region	650	660	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000046011

SMART Domains

Protein: ENSMUSP00000035930
Gene: ENSMUSG00000061458

Domain	Start	End	E-Value	Type
WD40	42	81	1.1e1	SMART
Blast:WD40	84	123	1e-8	BLAST
WD40	165	204	3.3e1	SMART
WD40	223	257	4.42e1	SMART
WD40	260	299	1.19e1	SMART
WD40	302	340	1.97e2	SMART
low complexity region	451	476	N/A	INTRINSIC
Pfam:NUC153	482	509	1.4e-15	PFAM
low complexity region	515	536	N/A	INTRINSIC
low complexity region	542	553	N/A	INTRINSIC
coiled coil region	557	588	N/A	INTRINSIC
low complexity region	650	660	N/A	INTRINSIC

Meta Mutation Damage Score

0.9596

Coding Region Coverage

1x: 97.3%
3x: 96.7%
10x: 95.1%
20x: 92.3%

Validation Efficiency

99% (94/95)

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acad11	T	C	9: 103,991,684 (GRCm39)	M573T	probably benign	Het
Ank3	A	G	10: 69,851,422 (GRCm39)	T1162A	possibly damaging	Het
Anxa2	TCCC	TCC	9: 69,397,036 (GRCm39)		probably null	Het
Arpp21	T	A	9: 111,972,595 (GRCm39)	D232V	probably damaging	Het
Atg2a	T	C	19: 6,304,414 (GRCm39)	Y1144H	probably damaging	Het
Auh	G	A	13: 52,989,532 (GRCm39)	P308L	probably benign	Het
Brs3	T	C	X: 56,092,449 (GRCm39)	I311T	probably benign	Het
Cenpf	C	T	1: 189,379,046 (GRCm39)	V2915I	probably benign	Het
Cep170	G	T	1: 176,602,245 (GRCm39)	T287K	probably benign	Het
Chst2	G	A	9: 95,287,611 (GRCm39)	T245I	probably damaging	Het
Cnot4	C	T	6: 35,055,092 (GRCm39)	V66I	probably damaging	Het
Cntn4	A	G	6: 106,656,353 (GRCm39)	T885A	probably benign	Het
Col20a1	C	T	2: 180,634,703 (GRCm39)	T131I	possibly damaging	Het
Coro7	G	T	16: 4,446,683 (GRCm39)		probably benign	Het
Cpne8	C	A	15: 90,532,831 (GRCm39)		probably benign	Het
Dbnl	G	A	11: 5,749,247 (GRCm39)	G356E	probably benign	Het
Ddx31	T	A	2: 28,749,002 (GRCm39)	I266N	probably damaging	Het
Dnah7a	A	T	1: 53,580,159 (GRCm39)	I1592N	probably damaging	Het
Dok6	A	T	18: 89,492,130 (GRCm39)	L149Q	probably damaging	Het
Eri2	G	A	7: 119,390,346 (GRCm39)	T94I	probably benign	Het
Ermp1	A	G	19: 29,594,079 (GRCm39)	V697A	probably benign	Het
Foxc1	C	T	13: 31,991,648 (GRCm39)	T153M	probably damaging	Het
Fry	A	G	5: 150,326,985 (GRCm39)	I1224V	probably benign	Het
Fzd5	G	A	1: 64,774,813 (GRCm39)	T316M	probably damaging	Het
Gcm1	G	T	9: 77,966,861 (GRCm39)	V27L	probably benign	Het
Gm5773	A	T	3: 93,681,348 (GRCm39)	D340V	probably benign	Het
Gucy2d	T	A	7: 98,100,815 (GRCm39)	H379Q	probably benign	Het
Hectd1	T	A	12: 51,847,738 (GRCm39)	M392L	probably benign	Het
Itpr2	A	C	6: 146,287,469 (GRCm39)	D452E	probably benign	Het
Krtap2-4	G	C	11: 99,505,505 (GRCm39)		probably benign	Het
Lrit1	T	C	14: 36,783,710 (GRCm39)	V346A	possibly damaging	Het
Lrrk1	A	G	7: 65,912,185 (GRCm39)	S1792P	probably benign	Het
Marveld2	A	T	13: 100,737,129 (GRCm39)	V168E	probably benign	Het
Ms4a4b	T	A	19: 11,438,629 (GRCm39)	D149E	probably damaging	Het
Myom2	G	A	8: 15,164,278 (GRCm39)	D1058N	probably benign	Het
Ncam2	C	T	16: 81,234,571 (GRCm39)	P142L	probably damaging	Het
Nek9	A	G	12: 85,379,330 (GRCm39)	L192P	probably damaging	Het
Nrcam	T	C	12: 44,591,538 (GRCm39)	V194A	probably damaging	Het
Nudt6	A	G	3: 37,466,549 (GRCm39)	V82A	probably benign	Het
Odf2l	A	T	3: 144,856,809 (GRCm39)	N492I	probably damaging	Het
Or2a12	T	C	6: 42,904,764 (GRCm39)	S200P	probably damaging	Het
Or51f1d	T	C	7: 102,701,189 (GRCm39)	I228T	probably benign	Het
Pkn3	T	C	2: 29,972,840 (GRCm39)	V276A	probably damaging	Het
Prl3b1	T	G	13: 27,431,886 (GRCm39)	L137R	possibly damaging	Het
Rab11fip2	A	G	19: 59,925,762 (GRCm39)	F10L	probably damaging	Het
Rab3b	T	A	4: 108,786,649 (GRCm39)	V133E	probably damaging	Het
Rnf111	A	T	9: 70,383,520 (GRCm39)	S138T	probably damaging	Het
Rsf1	G	A	7: 97,229,117 (GRCm39)		probably benign	Het
Runx1t1	A	G	4: 13,835,767 (GRCm39)	T75A	probably benign	Het
Ryr2	T	G	13: 11,753,242 (GRCm39)	K1693T	probably damaging	Het
Sdha	A	T	13: 74,481,255 (GRCm39)	I317N	probably damaging	Het
Serpina1d	T	A	12: 103,732,037 (GRCm39)	D274V	possibly damaging	Het
Setd2	T	G	9: 110,385,486 (GRCm39)		probably null	Het
Sh3tc2	A	G	18: 62,141,646 (GRCm39)	Y1109C	probably damaging	Het
Sik3	C	G	9: 46,132,387 (GRCm39)	H1276Q	probably benign	Het
Slc22a2	A	G	17: 12,833,713 (GRCm39)		probably benign	Het
Slc35f4	A	T	14: 49,551,091 (GRCm39)	W108R	probably damaging	Het
Slc4a1ap	A	G	5: 31,691,524 (GRCm39)	E440G	probably damaging	Het
Slc6a4	A	G	11: 76,904,201 (GRCm39)	T219A	probably benign	Het
Stxbp5	C	A	10: 9,688,042 (GRCm39)	V420F	possibly damaging	Het
Svil	T	G	18: 5,094,640 (GRCm39)	V1440G	possibly damaging	Het
Tas2r126	A	T	6: 42,411,961 (GRCm39)	T165S	probably benign	Het
Tbck	T	C	3: 132,430,677 (GRCm39)		probably null	Het
Tnxb	T	A	17: 34,908,539 (GRCm39)	D1520E	probably benign	Het
Top1mt	C	T	15: 75,539,750 (GRCm39)	R287H	possibly damaging	Het
Trdn	A	G	10: 33,133,091 (GRCm39)	K314E	probably benign	Het
Troap	T	A	15: 98,975,779 (GRCm39)	C233S	probably benign	Het
Usp28	T	C	9: 48,947,247 (GRCm39)	M571T	probably damaging	Het
Vac14	A	G	8: 111,438,319 (GRCm39)	H644R	probably damaging	Het
Vipr1	C	T	9: 121,494,930 (GRCm39)	P327L	possibly damaging	Het
Vmn1r31	C	T	6: 58,449,029 (GRCm39)	V279I	probably damaging	Het
Vmn1r69	G	A	7: 10,314,678 (GRCm39)	R18W	probably benign	Het
Vmn2r18	G	T	5: 151,499,190 (GRCm39)	Q425K	probably benign	Het
Vmn2r60	T	C	7: 41,786,094 (GRCm39)	V299A	probably damaging	Het
Vps13b	A	T	15: 35,430,437 (GRCm39)		probably benign	Het
Zfp157	A	G	5: 138,443,102 (GRCm39)	D31G	probably damaging	Het
Zfp385c	A	C	11: 100,521,532 (GRCm39)	V176G	probably benign	Het
Zfp831	A	G	2: 174,545,870 (GRCm39)	H1325R	possibly damaging	Het

Other mutations in Nol10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00916:Nol10	APN	12	17,411,130 (GRCm39)	splice site	probably benign
R1769:Nol10	UTSW	12	17,466,709 (GRCm39)	splice site	probably benign
R1930:Nol10	UTSW	12	17,398,555 (GRCm39)	start codon destroyed	probably null	0.99
R1931:Nol10	UTSW	12	17,398,555 (GRCm39)	start codon destroyed	probably null	0.99
R2010:Nol10	UTSW	12	17,466,102 (GRCm39)	missense	probably benign	0.00
R2037:Nol10	UTSW	12	17,411,152 (GRCm39)	missense	probably benign	0.01
R2168:Nol10	UTSW	12	17,423,585 (GRCm39)	missense	probably damaging	1.00
R3729:Nol10	UTSW	12	17,474,674 (GRCm39)	missense	probably benign	0.42
R3731:Nol10	UTSW	12	17,474,674 (GRCm39)	missense	probably benign	0.42
R4368:Nol10	UTSW	12	17,429,293 (GRCm39)	missense	probably damaging	1.00
R4618:Nol10	UTSW	12	17,398,562 (GRCm39)	missense	probably damaging	0.98
R4736:Nol10	UTSW	12	17,405,288 (GRCm39)	missense	probably damaging	1.00
R5342:Nol10	UTSW	12	17,419,621 (GRCm39)	splice site	probably null
R5451:Nol10	UTSW	12	17,409,103 (GRCm39)	nonsense	probably null
R5536:Nol10	UTSW	12	17,466,138 (GRCm39)	nonsense	probably null
R5586:Nol10	UTSW	12	17,466,829 (GRCm39)	missense	possibly damaging	0.73
R6045:Nol10	UTSW	12	17,398,479 (GRCm39)	start gained	probably benign
R6833:Nol10	UTSW	12	17,402,728 (GRCm39)	missense	probably benign	0.03
R7039:Nol10	UTSW	12	17,479,185 (GRCm39)	missense	possibly damaging	0.94
R7189:Nol10	UTSW	12	17,423,562 (GRCm39)	critical splice acceptor site	probably null
R7251:Nol10	UTSW	12	17,452,108 (GRCm39)	missense	probably damaging	1.00
R7399:Nol10	UTSW	12	17,452,174 (GRCm39)	missense	probably damaging	1.00
R7600:Nol10	UTSW	12	17,419,481 (GRCm39)	missense	probably damaging	0.99
R7650:Nol10	UTSW	12	17,412,683 (GRCm39)	critical splice donor site	probably null
R7729:Nol10	UTSW	12	17,474,676 (GRCm39)	missense	possibly damaging	0.62
R7772:Nol10	UTSW	12	17,398,586 (GRCm39)	missense	probably damaging	1.00
R7869:Nol10	UTSW	12	17,408,239 (GRCm39)	missense	probably null	0.93
R7972:Nol10	UTSW	12	17,402,648 (GRCm39)	missense	probably benign	0.15
R8686:Nol10	UTSW	12	17,419,772 (GRCm39)	intron	probably benign
R8926:Nol10	UTSW	12	17,466,871 (GRCm39)	missense	probably benign	0.00
R8936:Nol10	UTSW	12	17,466,863 (GRCm39)	missense	probably benign	0.08
R8966:Nol10	UTSW	12	17,419,507 (GRCm39)	missense	possibly damaging	0.64
R8994:Nol10	UTSW	12	17,402,717 (GRCm39)	missense	probably damaging	1.00
R9002:Nol10	UTSW	12	17,408,134 (GRCm39)	missense	probably damaging	1.00
R9096:Nol10	UTSW	12	17,466,199 (GRCm39)	missense	probably benign
R9196:Nol10	UTSW	12	17,455,316 (GRCm39)	missense	probably benign	0.04
R9548:Nol10	UTSW	12	17,466,144 (GRCm39)	missense	possibly damaging	0.49
Z1177:Nol10	UTSW	12	17,409,089 (GRCm39)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- TCCTGGAGAAGTTTCTGAAAACAG -3'
(R):5'- ACTGTTCCAAACCCCTATCAGG -3'

Sequencing Primer
(F):5'- GGAGAAGTTTCTGAAAACAGTGTTC -3'
(R):5'- TCAGGAATGTCTGAAGACTACCTCG -3'

Posted On

2014-06-30