Mutagenetix > Incidental Mutation

Incidental Mutation 'R1887:Hmgxb3'

209695

Institutional Source

Beutler Lab

Gene Symbol

Hmgxb3

Ensembl Gene

ENSMUSG00000024622

Gene Name

HMG box domain containing 3

Synonyms

2510002C16Rik, A630042L21Rik

MMRRC Submission

039908-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.773) question?

Stock #

R1887 (G1)

Quality Score

144

Status

Not validated

Chromosome

Chromosomal Location

61264349-61310122 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

A to G at 61270473 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000089498 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000091884]

AlphaFold

Q6AXF8

Predicted Effect

probably null
Transcript: ENSMUST00000091884

SMART Domains

Protein: ENSMUSP00000089498
Gene: ENSMUSG00000024622

Domain	Start	End	E-Value	Type
HMG	40	110	6.8e-15	SMART
low complexity region	182	194	N/A	INTRINSIC
internal_repeat_1	307	336	1.98e-9	PROSPERO
internal_repeat_1	583	612	1.98e-9	PROSPERO
low complexity region	817	830	N/A	INTRINSIC
low complexity region	966	977	N/A	INTRINSIC
low complexity region	1239	1254	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000158500

Coding Region Coverage

1x: 97.1%
3x: 96.1%
10x: 93.2%
20x: 86.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is one of the non-canonical high mobility group (HMG) genes. The encoded protein contains an HMG-box domain found in DNA binding proteins such as transcription factors and chromosomal proteins. [provided by RefSeq, Aug 2011]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700034J05Rik	T	C	6: 146,853,909 (GRCm39)	I249M	possibly damaging	Het
1700102P08Rik	T	A	9: 108,270,809 (GRCm39)	D124E	possibly damaging	Het
4930544D05Rik	A	G	11: 70,507,249 (GRCm39)	E98G	probably damaging	Het
Abca8a	A	T	11: 109,980,768 (GRCm39)	M90K	probably damaging	Het
Adamts9	A	G	6: 92,849,769 (GRCm39)		probably null	Het
Adora3	A	C	3: 105,812,152 (GRCm39)	N13H	possibly damaging	Het
Aen	A	T	7: 78,557,073 (GRCm39)	D307V	probably damaging	Het
Akr1c18	T	A	13: 4,193,287 (GRCm39)	N126I	probably benign	Het
Ankmy2	T	A	12: 36,220,467 (GRCm39)	M51K	possibly damaging	Het
Antkmt	C	A	17: 26,010,319 (GRCm39)		probably null	Het
Apc	A	G	18: 34,405,521 (GRCm39)	E159G	probably damaging	Het
Arhgef28	G	T	13: 98,282,081 (GRCm39)	S4R	probably damaging	Het
Atg2b	G	A	12: 105,620,351 (GRCm39)	T784M	probably benign	Het
Atp11a	A	G	8: 12,862,324 (GRCm39)	N59D	probably damaging	Het
Cacna1h	T	C	17: 25,595,861 (GRCm39)	Y1875C	probably benign	Het
Capza1	A	T	3: 104,747,096 (GRCm39)		probably null	Het
Ccdc81	T	C	7: 89,515,819 (GRCm39)	E620G	possibly damaging	Het
Cdcp2	T	C	4: 106,959,899 (GRCm39)	F105L	probably damaging	Het
Cdhr18	A	C	14: 13,828,607 (GRCm38)	Y718D	probably damaging	Het
Cep152	A	T	2: 125,462,225 (GRCm39)	M58K	probably benign	Het
Comtd1	A	G	14: 21,897,809 (GRCm39)	L108P	probably damaging	Het
Cyp2b13	A	G	7: 25,788,075 (GRCm39)	Y401C	probably damaging	Het
Dap3	A	G	3: 88,838,281 (GRCm39)	L86P	probably damaging	Het
Dmxl1	G	A	18: 49,992,202 (GRCm39)	R316H	probably benign	Het
Eea1	T	A	10: 95,854,073 (GRCm39)		probably null	Het
Eeig1	T	A	2: 32,450,140 (GRCm39)	N129K	possibly damaging	Het
Ezhip	GTCATCATCATCATC	GTCATCATCATCATCATC	X: 5,994,645 (GRCm39)		probably benign	Het
Fam171a1	T	C	2: 3,221,380 (GRCm39)	V157A	probably damaging	Het
Fat3	T	A	9: 15,878,357 (GRCm39)	I3375F	probably damaging	Het
Fmod	A	G	1: 133,968,551 (GRCm39)	E197G	possibly damaging	Het
Fsd1l	T	C	4: 53,696,984 (GRCm39)		probably null	Het
Gbp2b	A	G	3: 142,314,063 (GRCm39)	T448A	probably benign	Het
Gpatch1	A	T	7: 35,002,813 (GRCm39)	N232K	probably damaging	Het
H2-Q4	A	G	17: 35,599,113 (GRCm39)	R128G	possibly damaging	Het
Hc	T	C	2: 34,924,623 (GRCm39)	I435V	probably benign	Het
Il23r	A	T	6: 67,450,785 (GRCm39)	D231E	possibly damaging	Het
Irag1	A	G	7: 110,523,740 (GRCm39)		probably null	Het
Kcnt2	T	A	1: 140,511,985 (GRCm39)	S1023T	probably damaging	Het
Klc2	A	G	19: 5,158,640 (GRCm39)	V618A	probably benign	Het
Lzts1	T	C	8: 69,591,485 (GRCm39)	D221G	probably damaging	Het
Mdn1	G	C	4: 32,742,540 (GRCm39)	R3926P	probably damaging	Het
Med24	A	G	11: 98,609,642 (GRCm39)		probably benign	Het
Mga	T	A	2: 119,754,098 (GRCm39)	L869Q	probably damaging	Het
Mob3a	G	A	10: 80,527,068 (GRCm39)	Q86*	probably null	Het
Ncoa7	T	C	10: 30,524,448 (GRCm39)	N823S	possibly damaging	Het
Nlrp5	T	A	7: 23,116,909 (GRCm39)	V211D	probably damaging	Het
Nr1h4	A	T	10: 89,290,729 (GRCm39)	M433K	possibly damaging	Het
Ofcc1	T	C	13: 40,360,100 (GRCm39)	S310G	possibly damaging	Het
Or4k49	G	T	2: 111,495,099 (GRCm39)	S176I	probably damaging	Het
Or5p57	T	C	7: 107,665,985 (GRCm39)	N7D	probably benign	Het
Or8k22	A	G	2: 86,163,617 (GRCm39)	F28L	possibly damaging	Het
Pdlim7	C	T	13: 55,653,981 (GRCm39)	G212D	probably benign	Het
Pdzd4	G	A	X: 72,839,052 (GRCm39)	R419C	probably damaging	Het
Pik3cd	T	A	4: 149,737,091 (GRCm39)	I902F	probably damaging	Het
Pip5kl1	A	G	2: 32,468,517 (GRCm39)	T198A	probably damaging	Het
Prkdc	T	C	16: 15,647,499 (GRCm39)	V3641A	probably benign	Het
Rp1l1	T	C	14: 64,265,839 (GRCm39)	V475A	probably benign	Het
Rpl37	C	T	15: 5,148,072 (GRCm39)	T83M	possibly damaging	Het
Scml4	A	G	10: 42,788,223 (GRCm39)	Y51C	probably damaging	Het
Serinc5	A	T	13: 92,838,214 (GRCm39)	D340V	possibly damaging	Het
Stambpl1	A	G	19: 34,213,808 (GRCm39)	I346V	probably benign	Het
Syna	G	A	5: 134,588,106 (GRCm39)	S281L	probably benign	Het
Tcstv2a	G	T	13: 120,725,604 (GRCm39)	K89N	probably damaging	Het
Tet2	T	C	3: 133,193,094 (GRCm39)	T447A	possibly damaging	Het
Tgfbr3	A	G	5: 107,284,874 (GRCm39)	F592L	probably damaging	Het
Tmc7	A	T	7: 118,160,310 (GRCm39)	F176I	possibly damaging	Het
Trip4	T	A	9: 65,782,163 (GRCm39)	I190F	probably null	Het
Ttc6	T	A	12: 57,720,044 (GRCm39)	S872T	probably benign	Het
Ttc7b	C	T	12: 100,381,389 (GRCm39)		probably null	Het
Ubap2	C	T	4: 41,199,872 (GRCm39)	A752T	probably benign	Het
Ubr4	T	C	4: 139,182,871 (GRCm39)	L419P	probably damaging	Het
Ush2a	C	A	1: 188,132,177 (GRCm39)	Q800K	probably benign	Het
Vmn2r115	T	C	17: 23,565,007 (GRCm39)	I298T	possibly damaging	Het
Vmn2r28	T	C	7: 5,491,288 (GRCm39)	T320A	possibly damaging	Het
Zfp804b	T	C	5: 6,820,376 (GRCm39)	R860G	probably damaging	Het

Other mutations in Hmgxb3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00594:Hmgxb3	APN	18	61,290,811 (GRCm39)	missense	probably benign	0.00
IGL01325:Hmgxb3	APN	18	61,267,078 (GRCm39)	missense	probably damaging	1.00
IGL01364:Hmgxb3	APN	18	61,279,506 (GRCm39)	missense	probably damaging	0.96
IGL02160:Hmgxb3	APN	18	61,304,308 (GRCm39)	missense	probably damaging	1.00
IGL02271:Hmgxb3	APN	18	61,265,285 (GRCm39)	missense	probably damaging	1.00
IGL02755:Hmgxb3	APN	18	61,305,260 (GRCm39)	missense	probably damaging	1.00
R0309:Hmgxb3	UTSW	18	61,288,200 (GRCm39)	splice site	probably benign
R0828:Hmgxb3	UTSW	18	61,304,426 (GRCm39)	missense	probably damaging	1.00
R1276:Hmgxb3	UTSW	18	61,298,576 (GRCm39)	missense	probably benign	0.04
R1429:Hmgxb3	UTSW	18	61,283,505 (GRCm39)	missense	probably damaging	0.98
R1491:Hmgxb3	UTSW	18	61,266,980 (GRCm39)	missense	probably benign	0.04
R1675:Hmgxb3	UTSW	18	61,268,631 (GRCm39)	missense	probably damaging	1.00
R1886:Hmgxb3	UTSW	18	61,270,473 (GRCm39)	critical splice donor site	probably null
R2070:Hmgxb3	UTSW	18	61,304,431 (GRCm39)	missense	probably damaging	1.00
R2084:Hmgxb3	UTSW	18	61,288,095 (GRCm39)	splice site	probably benign
R2110:Hmgxb3	UTSW	18	61,288,458 (GRCm39)	missense	possibly damaging	0.54
R2112:Hmgxb3	UTSW	18	61,288,458 (GRCm39)	missense	possibly damaging	0.54
R2149:Hmgxb3	UTSW	18	61,290,746 (GRCm39)	missense	probably benign	0.08
R2342:Hmgxb3	UTSW	18	61,296,063 (GRCm39)	missense	possibly damaging	0.89
R2436:Hmgxb3	UTSW	18	61,280,566 (GRCm39)	missense	probably benign
R2898:Hmgxb3	UTSW	18	61,288,368 (GRCm39)	missense	probably benign	0.00
R2975:Hmgxb3	UTSW	18	61,296,038 (GRCm39)	nonsense	probably null
R3110:Hmgxb3	UTSW	18	61,280,454 (GRCm39)	missense	probably damaging	1.00
R3111:Hmgxb3	UTSW	18	61,280,454 (GRCm39)	missense	probably damaging	1.00
R3112:Hmgxb3	UTSW	18	61,280,454 (GRCm39)	missense	probably damaging	1.00
R4327:Hmgxb3	UTSW	18	61,300,611 (GRCm39)	missense	probably benign	0.11
R4710:Hmgxb3	UTSW	18	61,270,547 (GRCm39)	missense	probably damaging	1.00
R4750:Hmgxb3	UTSW	18	61,300,568 (GRCm39)	missense	probably benign
R4876:Hmgxb3	UTSW	18	61,279,606 (GRCm39)	missense	possibly damaging	0.94
R5177:Hmgxb3	UTSW	18	61,305,266 (GRCm39)	missense	probably damaging	1.00
R5490:Hmgxb3	UTSW	18	61,296,049 (GRCm39)	missense	probably damaging	0.99
R5601:Hmgxb3	UTSW	18	61,270,694 (GRCm39)	missense	probably damaging	1.00
R5718:Hmgxb3	UTSW	18	61,273,909 (GRCm39)	missense	probably benign	0.05
R6011:Hmgxb3	UTSW	18	61,296,096 (GRCm39)	missense	probably damaging	0.97
R6034:Hmgxb3	UTSW	18	61,265,594 (GRCm39)	missense	probably damaging	1.00
R6034:Hmgxb3	UTSW	18	61,265,594 (GRCm39)	missense	probably damaging	1.00
R6092:Hmgxb3	UTSW	18	61,270,672 (GRCm39)	missense	possibly damaging	0.56
R6142:Hmgxb3	UTSW	18	61,269,309 (GRCm39)	missense	probably benign	0.00
R6419:Hmgxb3	UTSW	18	61,285,296 (GRCm39)	missense	possibly damaging	0.71
R6675:Hmgxb3	UTSW	18	61,270,648 (GRCm39)	missense	possibly damaging	0.86
R7130:Hmgxb3	UTSW	18	61,265,450 (GRCm39)	missense	probably benign
R7431:Hmgxb3	UTSW	18	61,280,517 (GRCm39)	missense	probably damaging	1.00
R8265:Hmgxb3	UTSW	18	61,300,410 (GRCm39)	missense	possibly damaging	0.77
R8559:Hmgxb3	UTSW	18	61,288,491 (GRCm39)	missense	probably benign	0.19
R8674:Hmgxb3	UTSW	18	61,269,303 (GRCm39)	missense	probably benign	0.37
R8711:Hmgxb3	UTSW	18	61,290,721 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- CACATGCTGGAGTGTAGGTG -3'
(R):5'- TTTGGACCACAATGGAGACGG -3'

Sequencing Primer
(F):5'- CAGTTTTGGAGACAGGGTTTATCAC -3'
(R):5'- CGGAAGTGATTGAGCAGGTTGC -3'

Posted On

2014-06-30