Incidental Mutation 'R1872:Kdm5b'
ID |
210799 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Kdm5b
|
Ensembl Gene |
ENSMUSG00000042207 |
Gene Name |
lysine demethylase 5B |
Synonyms |
2010009J12Rik, PLU-1, Rb-Bp2, Jarid1b, D1Ertd202e, Plu1, 2210016I17Rik |
MMRRC Submission |
039894-MU
|
Accession Numbers |
|
Essential gene? |
Possibly non essential
(E-score: 0.451)
|
Stock # |
R1872 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
1 |
Chromosomal Location |
134487916-134560621 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 134552732 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Leucine to Proline
at position 1236
(L1236P)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000107817
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000047714]
[ENSMUST00000112198]
|
AlphaFold |
Q80Y84 |
PDB Structure |
Solution structure of the ARID domain of Jarid1b protein [SOLUTION NMR]
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000047714
AA Change: L1236P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000038138 Gene: ENSMUSG00000042207 AA Change: L1236P
Domain | Start | End | E-Value | Type |
low complexity region
|
7 |
30 |
N/A |
INTRINSIC |
JmjN
|
31 |
72 |
2.87e-20 |
SMART |
ARID
|
94 |
183 |
7.39e-32 |
SMART |
BRIGHT
|
98 |
188 |
1.51e-35 |
SMART |
low complexity region
|
228 |
239 |
N/A |
INTRINSIC |
PHD
|
311 |
357 |
6.15e-14 |
SMART |
JmjC
|
453 |
619 |
2.33e-67 |
SMART |
Pfam:zf-C5HC2
|
692 |
744 |
2.2e-17 |
PFAM |
Pfam:PLU-1
|
757 |
1088 |
5.6e-92 |
PFAM |
low complexity region
|
1097 |
1109 |
N/A |
INTRINSIC |
PHD
|
1178 |
1222 |
6.2e-10 |
SMART |
low complexity region
|
1225 |
1236 |
N/A |
INTRINSIC |
low complexity region
|
1406 |
1417 |
N/A |
INTRINSIC |
low complexity region
|
1470 |
1484 |
N/A |
INTRINSIC |
PHD
|
1486 |
1536 |
1.18e-6 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000112198
AA Change: L1236P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000107817 Gene: ENSMUSG00000042207 AA Change: L1236P
Domain | Start | End | E-Value | Type |
low complexity region
|
7 |
30 |
N/A |
INTRINSIC |
JmjN
|
31 |
72 |
2.87e-20 |
SMART |
ARID
|
94 |
183 |
7.39e-32 |
SMART |
BRIGHT
|
98 |
188 |
1.51e-35 |
SMART |
low complexity region
|
228 |
239 |
N/A |
INTRINSIC |
PHD
|
311 |
357 |
6.15e-14 |
SMART |
JmjC
|
453 |
619 |
2.33e-67 |
SMART |
Pfam:zf-C5HC2
|
692 |
745 |
6.7e-21 |
PFAM |
Pfam:PLU-1
|
756 |
1088 |
6e-94 |
PFAM |
low complexity region
|
1097 |
1109 |
N/A |
INTRINSIC |
PHD
|
1178 |
1222 |
6.2e-10 |
SMART |
low complexity region
|
1225 |
1236 |
N/A |
INTRINSIC |
low complexity region
|
1406 |
1417 |
N/A |
INTRINSIC |
low complexity region
|
1470 |
1484 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000133725
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000191572
|
Meta Mutation Damage Score |
0.9017 |
Coding Region Coverage |
- 1x: 97.3%
- 3x: 96.8%
- 10x: 95.4%
- 20x: 93.0%
|
Validation Efficiency |
97% (113/117) |
MGI Phenotype |
FUNCTION: This gene encodes a lysine-specific histone demethylase that belongs to the jumonji/ARID domain-containing family of histone demethylases. The encoded protein is capable of demethylating tri-, di- and monomethylated lysine 4 of histone H3. This protein plays a role in the transcriptional repression or certain tumor suppressor genes and is upregulated in certain cancer cells. This protein may also play a role in genome stability and DNA repair. Homozygous mutant mice display decreased body weight, decreased female fertility, lower uterine weight, and a delay in mammary development. Knockout of this gene has also been associated with embryonic lethality. [provided by RefSeq, Dec 2016] PHENOTYPE: Mice homozygous for a gene trapped allele exhibit decreased body weight, background-sensitive premature mortality, decreased female fertility, delayed mammary gland development, decreased serum estradiol levels, and reduced mammary epithelial cell proliferation in early puberty. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 108 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
1700003H04Rik |
C |
T |
3: 124,350,493 (GRCm39) |
C133Y |
unknown |
Het |
Abce1 |
A |
G |
8: 80,416,880 (GRCm39) |
M377T |
possibly damaging |
Het |
Adam25 |
A |
T |
8: 41,208,263 (GRCm39) |
R510* |
probably null |
Het |
Adamts12 |
G |
T |
15: 11,217,966 (GRCm39) |
E308* |
probably null |
Het |
Adgrg3 |
C |
A |
8: 95,760,070 (GRCm39) |
N96K |
possibly damaging |
Het |
Afdn |
T |
C |
17: 14,101,578 (GRCm39) |
V1022A |
probably damaging |
Het |
Akap9 |
T |
C |
5: 4,051,406 (GRCm39) |
V1391A |
probably damaging |
Het |
Akip1 |
A |
G |
7: 109,310,982 (GRCm39) |
Y174C |
probably damaging |
Het |
Aoc1l1 |
A |
G |
6: 48,952,554 (GRCm39) |
I160V |
probably benign |
Het |
Ap3b2 |
T |
C |
7: 81,113,898 (GRCm39) |
T830A |
unknown |
Het |
Aph1a |
A |
G |
3: 95,802,876 (GRCm39) |
T159A |
probably damaging |
Het |
Ccdc146 |
T |
C |
5: 21,506,288 (GRCm39) |
T718A |
probably benign |
Het |
Cdk5r2 |
T |
C |
1: 74,894,981 (GRCm39) |
L242P |
probably damaging |
Het |
Cep97 |
T |
A |
16: 55,748,229 (GRCm39) |
N67I |
probably damaging |
Het |
Cgas |
T |
C |
9: 78,340,484 (GRCm39) |
D416G |
probably benign |
Het |
Chic2 |
A |
T |
5: 75,172,140 (GRCm39) |
W121R |
possibly damaging |
Het |
Clock |
A |
G |
5: 76,396,309 (GRCm39) |
S147P |
possibly damaging |
Het |
Cntnap5a |
T |
G |
1: 116,016,940 (GRCm39) |
S178A |
probably benign |
Het |
Col11a2 |
C |
A |
17: 34,281,529 (GRCm39) |
|
probably benign |
Het |
Col6a3 |
T |
A |
1: 90,757,936 (GRCm39) |
H6L |
probably damaging |
Het |
Cpne5 |
T |
C |
17: 29,423,667 (GRCm39) |
N154D |
probably benign |
Het |
Ctsz |
T |
G |
2: 174,269,769 (GRCm39) |
K273Q |
probably benign |
Het |
Cybrd1 |
G |
A |
2: 70,960,104 (GRCm39) |
V101M |
probably benign |
Het |
Cyp2c23 |
T |
A |
19: 43,993,990 (GRCm39) |
K459* |
probably null |
Het |
Cyp4a31 |
A |
T |
4: 115,431,933 (GRCm39) |
H419L |
probably damaging |
Het |
D930020B18Rik |
G |
A |
10: 121,477,879 (GRCm39) |
V35M |
probably damaging |
Het |
Depp1 |
G |
A |
6: 116,628,683 (GRCm39) |
V9M |
possibly damaging |
Het |
Dnah9 |
C |
T |
11: 65,928,316 (GRCm39) |
V2118M |
probably benign |
Het |
Dtna |
T |
C |
18: 23,730,617 (GRCm39) |
|
probably null |
Het |
Ednra |
C |
T |
8: 78,447,025 (GRCm39) |
V18I |
possibly damaging |
Het |
Elac1 |
T |
C |
18: 73,875,717 (GRCm39) |
R105G |
probably benign |
Het |
Exoc2 |
A |
G |
13: 31,006,644 (GRCm39) |
S844P |
probably benign |
Het |
Fam185a |
A |
T |
5: 21,685,328 (GRCm39) |
|
probably null |
Het |
Fam204a |
A |
G |
19: 60,187,881 (GRCm39) |
M233T |
possibly damaging |
Het |
Fat1 |
C |
A |
8: 45,406,341 (GRCm39) |
H1031N |
probably benign |
Het |
Fat1 |
T |
A |
8: 45,491,386 (GRCm39) |
Y3816N |
probably damaging |
Het |
Fbxo38 |
C |
T |
18: 62,650,094 (GRCm39) |
R621Q |
probably benign |
Het |
Fhod3 |
C |
A |
18: 25,263,667 (GRCm39) |
R1524S |
probably damaging |
Het |
Fnip1 |
A |
T |
11: 54,378,561 (GRCm39) |
R192W |
probably damaging |
Het |
Frem3 |
T |
A |
8: 81,339,205 (GRCm39) |
H499Q |
probably damaging |
Het |
Gab2 |
C |
T |
7: 96,948,250 (GRCm39) |
T280I |
probably damaging |
Het |
Gdpgp1 |
A |
G |
7: 79,888,172 (GRCm39) |
R68G |
probably benign |
Het |
Gm10382 |
C |
T |
5: 125,466,624 (GRCm39) |
|
probably benign |
Het |
Gmps |
A |
G |
3: 63,908,938 (GRCm39) |
H480R |
probably benign |
Het |
Hecw1 |
G |
A |
13: 14,455,034 (GRCm39) |
R674* |
probably null |
Het |
Herc2 |
T |
A |
7: 55,807,257 (GRCm39) |
F2478L |
probably benign |
Het |
Homer2 |
C |
T |
7: 81,286,150 (GRCm39) |
V21M |
probably damaging |
Het |
Ifna9 |
A |
G |
4: 88,510,492 (GRCm39) |
M44T |
probably damaging |
Het |
Igfl3 |
A |
G |
7: 17,913,821 (GRCm39) |
D57G |
possibly damaging |
Het |
Jcad |
T |
C |
18: 4,673,048 (GRCm39) |
M270T |
probably benign |
Het |
Kif14 |
T |
A |
1: 136,414,096 (GRCm39) |
L724Q |
probably damaging |
Het |
Lhb |
T |
C |
7: 45,070,757 (GRCm39) |
V45A |
probably damaging |
Het |
Lhpp |
A |
G |
7: 132,235,816 (GRCm39) |
N134D |
probably benign |
Het |
Mas1 |
T |
C |
17: 13,061,078 (GRCm39) |
Y115C |
probably damaging |
Het |
Mgam |
A |
T |
6: 40,638,234 (GRCm39) |
K395* |
probably null |
Het |
Mms22l |
A |
G |
4: 24,598,807 (GRCm39) |
N1134S |
probably damaging |
Het |
Mrc1 |
A |
G |
2: 14,330,192 (GRCm39) |
|
probably null |
Het |
Mrgprg |
G |
A |
7: 143,318,281 (GRCm39) |
S277L |
probably damaging |
Het |
Mrpl49 |
G |
T |
19: 6,107,010 (GRCm39) |
P60T |
possibly damaging |
Het |
Mrps10 |
G |
A |
17: 47,683,377 (GRCm39) |
G104D |
possibly damaging |
Het |
Msantd3 |
A |
G |
4: 48,552,771 (GRCm39) |
Y120C |
probably damaging |
Het |
Mtcl2 |
A |
G |
2: 156,882,181 (GRCm39) |
C624R |
possibly damaging |
Het |
N4bp2 |
C |
T |
5: 65,951,861 (GRCm39) |
|
probably benign |
Het |
Nbea |
A |
G |
3: 55,550,310 (GRCm39) |
V2706A |
probably benign |
Het |
Nfic |
T |
A |
10: 81,256,518 (GRCm39) |
M71L |
possibly damaging |
Het |
Ntn4 |
C |
T |
10: 93,543,215 (GRCm39) |
R314W |
probably damaging |
Het |
Or12e1 |
A |
G |
2: 87,022,222 (GRCm39) |
T64A |
possibly damaging |
Het |
Or14j4 |
G |
T |
17: 37,920,803 (GRCm39) |
P280T |
probably damaging |
Het |
Or4a15 |
A |
G |
2: 89,192,933 (GRCm39) |
L280P |
probably damaging |
Het |
Or4c105 |
T |
A |
2: 88,648,280 (GRCm39) |
V255E |
probably benign |
Het |
Pak5 |
T |
C |
2: 135,927,508 (GRCm39) |
I655V |
possibly damaging |
Het |
Pip5k1c |
A |
G |
10: 81,142,153 (GRCm39) |
N121S |
probably damaging |
Het |
Plce1 |
A |
T |
19: 38,748,521 (GRCm39) |
I1737F |
probably damaging |
Het |
Prrt1 |
T |
C |
17: 34,849,925 (GRCm39) |
L113P |
probably damaging |
Het |
Ptprq |
T |
A |
10: 107,479,860 (GRCm39) |
T1137S |
probably benign |
Het |
Recql5 |
T |
C |
11: 115,814,135 (GRCm39) |
I223V |
probably benign |
Het |
Reg3g |
A |
T |
6: 78,444,836 (GRCm39) |
Y47* |
probably null |
Het |
Rgs12 |
T |
G |
5: 35,123,165 (GRCm39) |
M316R |
probably damaging |
Het |
Ric1 |
T |
C |
19: 29,580,068 (GRCm39) |
S1290P |
probably benign |
Het |
Rpl36al |
A |
G |
12: 69,229,697 (GRCm39) |
C72R |
probably damaging |
Het |
Rplp0 |
T |
A |
5: 115,701,374 (GRCm39) |
F275L |
possibly damaging |
Het |
Rpp30 |
G |
A |
19: 36,064,793 (GRCm39) |
V89I |
probably benign |
Het |
Ryr3 |
A |
G |
2: 112,539,482 (GRCm39) |
F3253L |
possibly damaging |
Het |
Serpina3n |
A |
T |
12: 104,375,203 (GRCm39) |
N92Y |
probably benign |
Het |
Setd7 |
G |
T |
3: 51,450,252 (GRCm39) |
T58N |
probably benign |
Het |
Sh3tc2 |
T |
A |
18: 62,144,954 (GRCm39) |
L1136Q |
probably damaging |
Het |
Slc35b4 |
G |
A |
6: 34,135,440 (GRCm39) |
Q291* |
probably null |
Het |
Sort1 |
A |
G |
3: 108,248,011 (GRCm39) |
N452S |
probably benign |
Het |
Sympk |
A |
G |
7: 18,763,070 (GRCm39) |
I46V |
probably benign |
Het |
Syngr2 |
T |
C |
11: 117,703,364 (GRCm39) |
V60A |
probably damaging |
Het |
Syt17 |
A |
T |
7: 118,007,341 (GRCm39) |
F318I |
probably benign |
Het |
Tdpoz8 |
T |
A |
3: 92,981,729 (GRCm39) |
L249H |
probably damaging |
Het |
Tgfb1 |
T |
A |
7: 25,391,891 (GRCm39) |
L149M |
probably damaging |
Het |
Ticam1 |
A |
T |
17: 56,578,897 (GRCm39) |
M66K |
probably benign |
Het |
Tmem131 |
G |
T |
1: 36,847,008 (GRCm39) |
D1363E |
probably benign |
Het |
Tns4 |
A |
C |
11: 98,970,926 (GRCm39) |
D261E |
probably damaging |
Het |
Trim30a |
T |
C |
7: 104,078,417 (GRCm39) |
N220D |
probably benign |
Het |
Trmt10a |
T |
C |
3: 137,862,481 (GRCm39) |
L257P |
probably damaging |
Het |
Troap |
G |
T |
15: 98,973,233 (GRCm39) |
|
probably benign |
Het |
Ttc6 |
T |
C |
12: 57,751,338 (GRCm39) |
|
probably null |
Het |
Ttn |
A |
T |
2: 76,641,587 (GRCm39) |
L5176Q |
possibly damaging |
Het |
Vav1 |
A |
C |
17: 57,631,750 (GRCm39) |
K775T |
probably damaging |
Het |
Vmn1r236 |
A |
G |
17: 21,507,673 (GRCm39) |
K264E |
possibly damaging |
Het |
Vmn1r84 |
A |
G |
7: 12,096,555 (GRCm39) |
V46A |
probably benign |
Het |
Wdr59 |
A |
T |
8: 112,185,649 (GRCm39) |
W835R |
probably damaging |
Het |
Zfp513 |
T |
G |
5: 31,357,767 (GRCm39) |
K202T |
probably damaging |
Het |
Zfp7 |
T |
G |
15: 76,775,977 (GRCm39) |
I673S |
probably benign |
Het |
Zmynd11 |
A |
G |
13: 9,748,737 (GRCm39) |
I108T |
possibly damaging |
Het |
|
Other mutations in Kdm5b |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00230:Kdm5b
|
APN |
1 |
134,548,693 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01458:Kdm5b
|
APN |
1 |
134,549,724 (GRCm39) |
missense |
possibly damaging |
0.53 |
IGL01567:Kdm5b
|
APN |
1 |
134,530,278 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01625:Kdm5b
|
APN |
1 |
134,545,706 (GRCm39) |
missense |
possibly damaging |
0.74 |
IGL01970:Kdm5b
|
APN |
1 |
134,528,465 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02183:Kdm5b
|
APN |
1 |
134,552,669 (GRCm39) |
missense |
probably benign |
0.09 |
IGL02592:Kdm5b
|
APN |
1 |
134,552,591 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02695:Kdm5b
|
APN |
1 |
134,532,223 (GRCm39) |
missense |
possibly damaging |
0.94 |
IGL02697:Kdm5b
|
APN |
1 |
134,516,511 (GRCm39) |
splice site |
probably benign |
|
IGL03036:Kdm5b
|
APN |
1 |
134,536,675 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03056:Kdm5b
|
APN |
1 |
134,515,717 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL03206:Kdm5b
|
APN |
1 |
134,555,055 (GRCm39) |
missense |
probably benign |
|
IGL03342:Kdm5b
|
APN |
1 |
134,530,314 (GRCm39) |
missense |
probably benign |
0.00 |
IGL03388:Kdm5b
|
APN |
1 |
134,555,060 (GRCm39) |
missense |
probably benign |
|
amaryllis
|
UTSW |
1 |
134,536,799 (GRCm39) |
critical splice donor site |
probably null |
|
PIT4486001:Kdm5b
|
UTSW |
1 |
134,556,423 (GRCm39) |
missense |
probably damaging |
1.00 |
R0233:Kdm5b
|
UTSW |
1 |
134,532,372 (GRCm39) |
splice site |
probably benign |
|
R0334:Kdm5b
|
UTSW |
1 |
134,532,260 (GRCm39) |
missense |
probably damaging |
0.99 |
R0504:Kdm5b
|
UTSW |
1 |
134,548,761 (GRCm39) |
critical splice donor site |
probably null |
|
R0505:Kdm5b
|
UTSW |
1 |
134,530,309 (GRCm39) |
missense |
probably damaging |
0.96 |
R0521:Kdm5b
|
UTSW |
1 |
134,545,771 (GRCm39) |
missense |
possibly damaging |
0.65 |
R1004:Kdm5b
|
UTSW |
1 |
134,516,642 (GRCm39) |
missense |
possibly damaging |
0.71 |
R1087:Kdm5b
|
UTSW |
1 |
134,528,375 (GRCm39) |
missense |
probably damaging |
1.00 |
R1126:Kdm5b
|
UTSW |
1 |
134,541,729 (GRCm39) |
missense |
possibly damaging |
0.90 |
R1221:Kdm5b
|
UTSW |
1 |
134,526,829 (GRCm39) |
missense |
probably damaging |
0.98 |
R1230:Kdm5b
|
UTSW |
1 |
134,540,992 (GRCm39) |
missense |
probably damaging |
1.00 |
R1345:Kdm5b
|
UTSW |
1 |
134,558,288 (GRCm39) |
missense |
possibly damaging |
0.94 |
R1482:Kdm5b
|
UTSW |
1 |
134,552,635 (GRCm39) |
missense |
probably damaging |
1.00 |
R1582:Kdm5b
|
UTSW |
1 |
134,552,591 (GRCm39) |
missense |
probably damaging |
0.99 |
R1653:Kdm5b
|
UTSW |
1 |
134,530,219 (GRCm39) |
missense |
probably damaging |
1.00 |
R1693:Kdm5b
|
UTSW |
1 |
134,525,314 (GRCm39) |
splice site |
probably benign |
|
R1721:Kdm5b
|
UTSW |
1 |
134,540,919 (GRCm39) |
splice site |
probably benign |
|
R1741:Kdm5b
|
UTSW |
1 |
134,545,755 (GRCm39) |
missense |
possibly damaging |
0.82 |
R1762:Kdm5b
|
UTSW |
1 |
134,532,205 (GRCm39) |
nonsense |
probably null |
|
R1820:Kdm5b
|
UTSW |
1 |
134,525,408 (GRCm39) |
missense |
possibly damaging |
0.87 |
R1966:Kdm5b
|
UTSW |
1 |
134,541,611 (GRCm39) |
splice site |
probably null |
|
R2056:Kdm5b
|
UTSW |
1 |
134,540,952 (GRCm39) |
missense |
probably benign |
0.05 |
R2059:Kdm5b
|
UTSW |
1 |
134,540,952 (GRCm39) |
missense |
probably benign |
0.05 |
R2405:Kdm5b
|
UTSW |
1 |
134,536,754 (GRCm39) |
missense |
probably damaging |
0.97 |
R3417:Kdm5b
|
UTSW |
1 |
134,515,715 (GRCm39) |
missense |
probably damaging |
1.00 |
R3771:Kdm5b
|
UTSW |
1 |
134,541,083 (GRCm39) |
missense |
probably damaging |
1.00 |
R3783:Kdm5b
|
UTSW |
1 |
134,558,280 (GRCm39) |
missense |
probably benign |
|
R3803:Kdm5b
|
UTSW |
1 |
134,543,679 (GRCm39) |
missense |
probably benign |
0.07 |
R3980:Kdm5b
|
UTSW |
1 |
134,547,408 (GRCm39) |
missense |
probably benign |
0.11 |
R3983:Kdm5b
|
UTSW |
1 |
134,559,042 (GRCm39) |
missense |
possibly damaging |
0.91 |
R4013:Kdm5b
|
UTSW |
1 |
134,555,067 (GRCm39) |
missense |
possibly damaging |
0.86 |
R4162:Kdm5b
|
UTSW |
1 |
134,552,899 (GRCm39) |
missense |
probably benign |
0.01 |
R4701:Kdm5b
|
UTSW |
1 |
134,533,750 (GRCm39) |
intron |
probably benign |
|
R4791:Kdm5b
|
UTSW |
1 |
134,558,538 (GRCm39) |
missense |
possibly damaging |
0.82 |
R4836:Kdm5b
|
UTSW |
1 |
134,521,053 (GRCm39) |
splice site |
probably null |
|
R4924:Kdm5b
|
UTSW |
1 |
134,559,089 (GRCm39) |
missense |
probably benign |
0.00 |
R5135:Kdm5b
|
UTSW |
1 |
134,516,484 (GRCm39) |
intron |
probably benign |
|
R5248:Kdm5b
|
UTSW |
1 |
134,548,735 (GRCm39) |
missense |
probably benign |
0.11 |
R5290:Kdm5b
|
UTSW |
1 |
134,549,837 (GRCm39) |
splice site |
probably null |
|
R5358:Kdm5b
|
UTSW |
1 |
134,535,432 (GRCm39) |
nonsense |
probably null |
|
R5388:Kdm5b
|
UTSW |
1 |
134,536,635 (GRCm39) |
nonsense |
probably null |
|
R5396:Kdm5b
|
UTSW |
1 |
134,549,836 (GRCm39) |
splice site |
probably null |
|
R5397:Kdm5b
|
UTSW |
1 |
134,549,836 (GRCm39) |
splice site |
probably null |
|
R5398:Kdm5b
|
UTSW |
1 |
134,549,836 (GRCm39) |
splice site |
probably null |
|
R5399:Kdm5b
|
UTSW |
1 |
134,549,836 (GRCm39) |
splice site |
probably null |
|
R5529:Kdm5b
|
UTSW |
1 |
134,515,741 (GRCm39) |
missense |
probably damaging |
1.00 |
R5540:Kdm5b
|
UTSW |
1 |
134,558,979 (GRCm39) |
missense |
probably damaging |
0.98 |
R5661:Kdm5b
|
UTSW |
1 |
134,526,811 (GRCm39) |
missense |
probably benign |
0.01 |
R5663:Kdm5b
|
UTSW |
1 |
134,558,373 (GRCm39) |
missense |
probably benign |
|
R5822:Kdm5b
|
UTSW |
1 |
134,516,511 (GRCm39) |
splice site |
probably benign |
|
R6226:Kdm5b
|
UTSW |
1 |
134,536,616 (GRCm39) |
missense |
probably damaging |
0.99 |
R6368:Kdm5b
|
UTSW |
1 |
134,526,945 (GRCm39) |
missense |
probably damaging |
1.00 |
R6681:Kdm5b
|
UTSW |
1 |
134,541,007 (GRCm39) |
missense |
possibly damaging |
0.90 |
R6715:Kdm5b
|
UTSW |
1 |
134,536,799 (GRCm39) |
critical splice donor site |
probably null |
|
R7132:Kdm5b
|
UTSW |
1 |
134,526,844 (GRCm39) |
missense |
probably damaging |
1.00 |
R7202:Kdm5b
|
UTSW |
1 |
134,552,497 (GRCm39) |
missense |
probably benign |
|
R7258:Kdm5b
|
UTSW |
1 |
134,548,759 (GRCm39) |
missense |
probably damaging |
1.00 |
R7335:Kdm5b
|
UTSW |
1 |
134,488,177 (GRCm39) |
missense |
probably damaging |
1.00 |
R7420:Kdm5b
|
UTSW |
1 |
134,532,235 (GRCm39) |
missense |
probably benign |
0.14 |
R7426:Kdm5b
|
UTSW |
1 |
134,523,571 (GRCm39) |
missense |
probably benign |
0.02 |
R7452:Kdm5b
|
UTSW |
1 |
134,552,686 (GRCm39) |
missense |
probably damaging |
1.00 |
R7595:Kdm5b
|
UTSW |
1 |
134,536,704 (GRCm39) |
missense |
probably benign |
0.00 |
R7612:Kdm5b
|
UTSW |
1 |
134,552,656 (GRCm39) |
nonsense |
probably null |
|
R7704:Kdm5b
|
UTSW |
1 |
134,515,669 (GRCm39) |
missense |
probably damaging |
1.00 |
R7846:Kdm5b
|
UTSW |
1 |
134,545,578 (GRCm39) |
missense |
probably damaging |
1.00 |
R8115:Kdm5b
|
UTSW |
1 |
134,547,411 (GRCm39) |
missense |
possibly damaging |
0.83 |
R8146:Kdm5b
|
UTSW |
1 |
134,552,864 (GRCm39) |
missense |
probably benign |
0.05 |
R8160:Kdm5b
|
UTSW |
1 |
134,541,657 (GRCm39) |
missense |
probably damaging |
1.00 |
R8527:Kdm5b
|
UTSW |
1 |
134,533,512 (GRCm39) |
missense |
possibly damaging |
0.78 |
R8542:Kdm5b
|
UTSW |
1 |
134,533,512 (GRCm39) |
missense |
possibly damaging |
0.78 |
R8930:Kdm5b
|
UTSW |
1 |
134,544,010 (GRCm39) |
missense |
probably damaging |
1.00 |
R8932:Kdm5b
|
UTSW |
1 |
134,544,010 (GRCm39) |
missense |
probably damaging |
1.00 |
R8950:Kdm5b
|
UTSW |
1 |
134,541,664 (GRCm39) |
missense |
possibly damaging |
0.84 |
R9089:Kdm5b
|
UTSW |
1 |
134,535,506 (GRCm39) |
missense |
probably damaging |
0.98 |
R9109:Kdm5b
|
UTSW |
1 |
134,528,493 (GRCm39) |
critical splice donor site |
probably null |
|
R9133:Kdm5b
|
UTSW |
1 |
134,530,323 (GRCm39) |
missense |
probably benign |
|
R9298:Kdm5b
|
UTSW |
1 |
134,528,493 (GRCm39) |
critical splice donor site |
probably null |
|
R9423:Kdm5b
|
UTSW |
1 |
134,515,705 (GRCm39) |
missense |
possibly damaging |
0.85 |
R9630:Kdm5b
|
UTSW |
1 |
134,512,971 (GRCm39) |
critical splice donor site |
probably null |
|
R9670:Kdm5b
|
UTSW |
1 |
134,558,240 (GRCm39) |
nonsense |
probably null |
|
X0063:Kdm5b
|
UTSW |
1 |
134,516,614 (GRCm39) |
missense |
probably benign |
0.07 |
Z1176:Kdm5b
|
UTSW |
1 |
134,552,773 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1177:Kdm5b
|
UTSW |
1 |
134,523,536 (GRCm39) |
frame shift |
probably null |
|
|
Predicted Primers |
PCR Primer
(F):5'- CTGCTTGTGTCAGAAGACTCC -3'
(R):5'- GTATCCCACAAAGTGCAGGC -3'
Sequencing Primer
(F):5'- TTGTGTCAGAAGACTCCAGCCAC -3'
(R):5'- CTGATGCCTGTCCTGCTGAG -3'
|
Posted On |
2014-06-30 |