Incidental Mutation 'R1896:Gzmk'
ID 212007
Institutional Source Beutler Lab
Gene Symbol Gzmk
Ensembl Gene ENSMUSG00000042385
Gene Name granzyme K
Synonyms
MMRRC Submission 039916-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1896 (G1)
Quality Score 221
Status Not validated
Chromosome 13
Chromosomal Location 113308164-113317499 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 113309427 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Proline at position 208 (S208P)
Ref Sequence ENSEMBL: ENSMUSP00000044512 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038212] [ENSMUST00000122399] [ENSMUST00000140324]
AlphaFold O35205
Predicted Effect probably damaging
Transcript: ENSMUST00000038212
AA Change: S208P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000044512
Gene: ENSMUSG00000042385
AA Change: S208P

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Tryp_SPc 25 253 2.12e-87 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000122399
AA Change: S169P

PolyPhen 2 Score 0.165 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000113530
Gene: ENSMUSG00000042385
AA Change: S169P

DomainStartEndE-ValueType
Tryp_SPc 1 214 9.28e-70 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000140324
SMART Domains Protein: ENSMUSP00000114250
Gene: ENSMUSG00000042385

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Pfam:Trypsin 26 69 1.2e-18 PFAM
Meta Mutation Damage Score 0.4192 question?
Coding Region Coverage
  • 1x: 97.3%
  • 3x: 96.7%
  • 10x: 94.9%
  • 20x: 91.4%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene product is a member of a group of related serine proteases from the cytoplasmic granules of cytotoxic lymphocytes. Cytolytic T lymphocytes (CTL) and natural killer (NK) cells share the remarkable ability to recognize, bind, and lyse specific target cells. They are thought to protect their host by lysing cells bearing on their surface 'nonself' antigens, usually peptides or proteins resulting from infection by intracellular pathogens. The protein described here lacks consensus sequences for N-glycosylation present in other granzymes. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abo C A 2: 26,733,609 (GRCm39) D199Y probably damaging Het
Acvr1c A C 2: 58,170,306 (GRCm39) V277G probably damaging Het
Adam23 G A 1: 63,584,731 (GRCm39) A380T probably benign Het
Art2b A G 7: 101,229,236 (GRCm39) V221A probably benign Het
Bcam A G 7: 19,500,640 (GRCm39) S153P probably damaging Het
Bltp1 C T 3: 36,962,380 (GRCm39) Q494* probably null Het
C1qtnf1 G T 11: 118,334,583 (GRCm39) G21V probably damaging Het
Car13 T C 3: 14,710,235 (GRCm39) I59T probably benign Het
Cep97 T C 16: 55,748,107 (GRCm39) N108D probably damaging Het
Cog3 T A 14: 75,979,784 (GRCm39) E182D probably benign Het
Efcab3 A G 11: 104,611,514 (GRCm39) K452R probably benign Het
Endou A G 15: 97,610,873 (GRCm39) Y404H probably damaging Het
F12 T C 13: 55,568,540 (GRCm39) Y373C probably damaging Het
Fam221b T C 4: 43,660,375 (GRCm39) T405A probably damaging Het
Fetub A G 16: 22,751,045 (GRCm39) R131G probably damaging Het
Foxp2 A T 6: 15,379,767 (GRCm39) probably benign Het
Ggt5 T C 10: 75,440,560 (GRCm39) V227A probably damaging Het
Gipr A G 7: 18,897,996 (GRCm39) S79P probably benign Het
Gphn A G 12: 78,459,128 (GRCm39) D72G possibly damaging Het
Itpkc T C 7: 26,907,805 (GRCm39) D633G probably damaging Het
Jarid2 T C 13: 45,038,358 (GRCm39) probably null Het
Kif21b C A 1: 136,075,583 (GRCm39) R237S possibly damaging Het
Lama1 G A 17: 68,098,218 (GRCm39) R1805H probably benign Het
Lpin3 C T 2: 160,747,218 (GRCm39) P815S probably damaging Het
Lrp1 T A 10: 127,395,867 (GRCm39) I2468F possibly damaging Het
Nav1 T C 1: 135,388,475 (GRCm39) N1118S probably benign Het
Ncoa3 T A 2: 165,890,384 (GRCm39) I90N probably benign Het
Notch3 T C 17: 32,362,402 (GRCm39) T1408A probably benign Het
Nwd2 A G 5: 63,962,753 (GRCm39) D779G probably benign Het
Obox6 A T 7: 15,568,770 (GRCm39) H35Q possibly damaging Het
Pkd1l3 C A 8: 110,350,831 (GRCm39) P559T possibly damaging Het
Pou2af2 A G 9: 51,203,098 (GRCm39) S19P probably damaging Het
Pramel23 C G 4: 143,424,714 (GRCm39) G243A probably benign Het
Prex1 T A 2: 166,428,574 (GRCm39) I716F probably benign Het
Psap C T 10: 60,130,826 (GRCm39) Q219* probably null Het
Rab5if C T 2: 156,707,252 (GRCm39) P64S probably damaging Het
Shisa5 T A 9: 108,885,108 (GRCm39) I126N probably damaging Het
Slc11a1 T C 1: 74,414,931 (GRCm39) L21P probably benign Het
Slc4a4 A G 5: 89,194,167 (GRCm39) T172A probably damaging Het
Sned1 C T 1: 93,192,769 (GRCm39) P352L probably benign Het
Sox4 T C 13: 29,136,127 (GRCm39) Y293C probably damaging Het
Srgap3 T A 6: 112,715,958 (GRCm39) H654L probably benign Het
Stra6 A T 9: 58,059,166 (GRCm39) M510L probably benign Het
Syna C A 5: 134,588,006 (GRCm39) M314I probably benign Het
Taf5l A G 8: 124,730,152 (GRCm39) L144P probably damaging Het
Tll2 A G 19: 41,101,498 (GRCm39) F379L probably benign Het
Traf3ip3 A G 1: 192,858,042 (GRCm39) V492A probably benign Het
Uba2 A G 7: 33,850,455 (GRCm39) F364S probably damaging Het
Unc50 T A 1: 37,476,323 (GRCm39) L161Q probably damaging Het
Ush2a T C 1: 188,282,206 (GRCm39) V1907A probably benign Het
Uso1 A T 5: 92,348,992 (GRCm39) probably null Het
Utf1 C A 7: 139,524,213 (GRCm39) L143I probably damaging Het
Vmn1r158 C T 7: 22,490,143 (GRCm39) C22Y probably damaging Het
Vmn1r36 T A 6: 66,693,756 (GRCm39) M40L probably benign Het
Vmn2r43 A G 7: 8,258,055 (GRCm39) V386A possibly damaging Het
Vps9d1 C A 8: 123,973,778 (GRCm39) R335L probably damaging Het
Zbtb26 A G 2: 37,326,347 (GRCm39) S230P possibly damaging Het
Zfp74 A T 7: 29,634,569 (GRCm39) C380S probably damaging Het
Zfyve1 A C 12: 83,602,388 (GRCm39) V469G probably damaging Het
Other mutations in Gzmk
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00563:Gzmk APN 13 113,309,658 (GRCm39) missense probably benign 0.09
IGL01702:Gzmk APN 13 113,317,084 (GRCm39) missense probably damaging 1.00
IGL02869:Gzmk APN 13 113,308,560 (GRCm39) missense probably damaging 1.00
R1687:Gzmk UTSW 13 113,310,462 (GRCm39) missense probably benign 0.32
R1813:Gzmk UTSW 13 113,309,427 (GRCm39) missense probably damaging 1.00
R2113:Gzmk UTSW 13 113,310,489 (GRCm39) missense probably benign 0.33
R2128:Gzmk UTSW 13 113,308,548 (GRCm39) missense probably damaging 0.99
R2993:Gzmk UTSW 13 113,317,011 (GRCm39) missense probably damaging 1.00
R3936:Gzmk UTSW 13 113,309,559 (GRCm39) missense probably damaging 1.00
R4619:Gzmk UTSW 13 113,309,657 (GRCm39) missense probably damaging 0.99
R4838:Gzmk UTSW 13 113,309,555 (GRCm39) missense probably damaging 1.00
R5131:Gzmk UTSW 13 113,310,482 (GRCm39) missense probably benign
R5892:Gzmk UTSW 13 113,310,456 (GRCm39) critical splice donor site probably null
R6582:Gzmk UTSW 13 113,317,045 (GRCm39) missense probably damaging 1.00
R7491:Gzmk UTSW 13 113,308,535 (GRCm39) missense probably benign 0.36
R8027:Gzmk UTSW 13 113,308,434 (GRCm39) nonsense probably null
R8145:Gzmk UTSW 13 113,308,430 (GRCm39) missense probably damaging 1.00
X0025:Gzmk UTSW 13 113,317,367 (GRCm39) splice site probably null
Predicted Primers PCR Primer
(F):5'- CCTGTGACCATTTGCTGACTGG -3'
(R):5'- ATGTCCAACTGCTTCACCTG -3'

Sequencing Primer
(F):5'- CTGACTGGCGTGACTTCAGAG -3'
(R):5'- CTATCTTAGAGATGGGACCAAATGCC -3'
Posted On 2014-06-30