Mutagenetix > Incidental Mutation

Incidental Mutation 'R1898:Odc1'

212148

Institutional Source

Beutler Lab

Gene Symbol

Odc1

Ensembl Gene

ENSMUSG00000011179

Gene Name

ornithine decarboxylase, structural 1

Synonyms

ODC

MMRRC Submission

039918-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1898 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

17594906-17601503 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 17598842 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 241 (S241T)

Ref Sequence

ENSEMBL: ENSMUSP00000128661 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000171737] [ENSMUST00000222617]

AlphaFold

P00860

PDB Structure

CRYSTAL STRUCTURE ORNITHINE DECARBOXYLASE FROM MOUSE, TRUNCATED 37 RESIDUES FROM THE C-TERMINUS, TO 1.6 ANGSTROM RESOLUTION [X-RAY DIFFRACTION]

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000082493

Predicted Effect

probably damaging
Transcript: ENSMUST00000171737
AA Change: S241T

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000128661
Gene: ENSMUSG00000011179
AA Change: S241T

Domain	Start	End	E-Value	Type
Pfam:Orn_Arg_deC_N	44	282	2.2e-93	PFAM
Pfam:Orn_DAP_Arg_deC	286	407	1.7e-37	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000220849

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000220947

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000221354

Predicted Effect

probably benign
Transcript: ENSMUST00000221613

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000221701

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000222758

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000222250

Predicted Effect

probably benign
Transcript: ENSMUST00000222617

Coding Region Coverage

1x: 97.3%
3x: 96.8%
10x: 95.3%
20x: 92.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the rate-limiting enzyme of the polyamine biosynthesis pathway which catalyzes ornithine to putrescine. The activity level for the enzyme varies in response to growth-promoting stimuli and exhibits a high turnover rate in comparison to other mammalian proteins. Originally localized to both chromosomes 2 and 7, the gene encoding this enzyme has been determined to be located on 2p25, with a pseudogene located on 7q31-qter. Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified. [provided by RefSeq, Dec 2013]
PHENOTYPE: Homozygous null embryos die prior to gastrulation. [provided by MGI curators]

Allele List at MGI

All alleles(9) : Targeted, other(3) Gene trapped(6)

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca1	C	A	4: 53,071,977 (GRCm39)	R1195L	probably benign	Het
Abca14	A	G	7: 119,850,392 (GRCm39)	Y748C	probably damaging	Het
Abca6	A	G	11: 110,099,625 (GRCm39)	F974S	probably damaging	Het
Acyp1	T	C	12: 85,335,114 (GRCm39)	K2E	probably benign	Het
Ahcy	T	A	2: 154,904,173 (GRCm39)	S355C	probably benign	Het
AI182371	A	G	2: 34,990,661 (GRCm39)	V12A	probably damaging	Het
Ankrd36	T	C	11: 5,525,683 (GRCm39)	I215T	probably benign	Het
Aox1	C	T	1: 58,117,601 (GRCm39)	R828C	probably damaging	Het
Atp1a4	T	A	1: 172,062,615 (GRCm39)	I631F	probably damaging	Het
Brd10	T	C	19: 29,712,532 (GRCm39)	N789S	possibly damaging	Het
Brinp3	T	G	1: 146,776,987 (GRCm39)	V478G	possibly damaging	Het
Cadm2	G	A	16: 66,612,271 (GRCm39)	S106L	probably damaging	Het
Celf2	C	T	2: 6,608,975 (GRCm39)	V95M	probably damaging	Het
Chka	A	T	19: 3,942,205 (GRCm39)	E404D	probably damaging	Het
Clec5a	A	C	6: 40,558,870 (GRCm39)	V72G	probably benign	Het
Cnn1	T	C	9: 22,012,560 (GRCm39)		probably null	Het
Coq6	A	G	12: 84,413,737 (GRCm39)	E89G	probably benign	Het
Cpne6	A	T	14: 55,754,485 (GRCm39)	I538F	possibly damaging	Het
Crx	G	A	7: 15,602,148 (GRCm39)	P177S	probably damaging	Het
Cysltr2	G	T	14: 73,266,973 (GRCm39)	P246T	probably damaging	Het
Decr1	A	G	4: 15,929,801 (GRCm39)	I164T	probably damaging	Het
Dmtf1	A	T	5: 9,178,091 (GRCm39)	V315E	probably damaging	Het
Dnah7b	A	G	1: 46,275,874 (GRCm39)	N2587S	probably benign	Het
E2f6	C	A	12: 16,874,581 (GRCm39)	T221K	probably benign	Het
Fat3	T	G	9: 15,871,426 (GRCm39)	D3655A	probably damaging	Het
Fbxw28	G	A	9: 109,152,452 (GRCm39)	T384I	probably benign	Het
Fes	T	A	7: 80,029,659 (GRCm39)	I608F	probably damaging	Het
Flnc	G	A	6: 29,438,665 (GRCm39)	W186*	probably null	Het
Gabrb2	A	G	11: 42,484,659 (GRCm39)	K239E	possibly damaging	Het
Gen1	T	C	12: 11,291,609 (GRCm39)	R727G	probably benign	Het
Glb1	T	A	9: 114,253,103 (GRCm39)	V184E	probably damaging	Het
Gngt1	A	T	6: 3,996,724 (GRCm39)	I57F	possibly damaging	Het
Ice1	T	C	13: 70,750,426 (GRCm39)	I87V	possibly damaging	Het
Itih1	A	G	14: 30,654,244 (GRCm39)	Y674H	probably benign	Het
Itsn1	T	A	16: 91,696,468 (GRCm39)	C24S	probably damaging	Het
Loxl1	A	G	9: 58,204,961 (GRCm39)	V418A	probably damaging	Het
Myh10	A	G	11: 68,662,732 (GRCm39)	N595S	probably damaging	Het
Myo5c	C	T	9: 75,204,908 (GRCm39)	T1587I	probably damaging	Het
Npat	T	A	9: 53,474,937 (GRCm39)	F910I	probably damaging	Het
Nradd	T	C	9: 110,450,676 (GRCm39)	Y167C	probably damaging	Het
Nt5dc1	T	C	10: 34,189,631 (GRCm39)	E352G	probably benign	Het
Numa1	T	C	7: 101,641,927 (GRCm39)		probably null	Het
Or11g2	A	T	14: 50,856,231 (GRCm39)	D184V	probably damaging	Het
Or14j7	A	T	17: 38,234,516 (GRCm39)	N20Y	possibly damaging	Het
Pcnx3	T	C	19: 5,722,615 (GRCm39)	D951G	probably damaging	Het
Pigg	T	C	5: 108,484,408 (GRCm39)	F685L	probably benign	Het
Pnpla7	T	A	2: 24,943,796 (GRCm39)		probably benign	Het
Pramel16	C	T	4: 143,677,298 (GRCm39)	V94M	probably damaging	Het
Rcsd1	C	T	1: 165,486,998 (GRCm39)	A72T	probably benign	Het
Rp1l1	A	T	14: 64,269,039 (GRCm39)	T1542S	probably benign	Het
Sct	A	T	7: 140,858,761 (GRCm39)	L57Q	probably damaging	Het
Serpinb3b	T	C	1: 107,082,317 (GRCm39)	S316G	possibly damaging	Het
Shprh	T	C	10: 11,062,613 (GRCm39)	L1240S	probably damaging	Het
Slc4a1	C	T	11: 102,241,133 (GRCm39)	E924K	probably damaging	Het
Sp7	A	T	15: 102,267,453 (GRCm39)	Y118N	possibly damaging	Het
Srebf2	A	G	15: 82,087,936 (GRCm39)	T219A	probably damaging	Het
Tenm3	G	T	8: 48,763,796 (GRCm39)	P753T	probably damaging	Het
Tonsl	A	T	15: 76,523,053 (GRCm39)		probably null	Het
Trio	A	T	15: 27,742,466 (GRCm39)	S2675T	possibly damaging	Het
Tspan12	T	C	6: 21,795,693 (GRCm39)	T166A	probably damaging	Het
Ttll4	A	G	1: 74,736,641 (GRCm39)	D1122G	probably benign	Het
Vmn1r77	G	A	7: 11,775,550 (GRCm39)	A41T	probably damaging	Het
Xpo7	A	T	14: 70,933,064 (GRCm39)	F276Y	probably benign	Het
Zdhhc1	A	T	8: 106,205,378 (GRCm39)		probably null	Het
Zfp319	C	A	8: 96,055,417 (GRCm39)	C262F	probably damaging	Het
Zfp442	C	T	2: 150,250,582 (GRCm39)	C383Y	probably damaging	Het
Zfp57	G	T	17: 37,320,650 (GRCm39)	R168L	possibly damaging	Het

Other mutations in Odc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02135:Odc1	APN	12	17,597,674 (GRCm39)	missense	probably damaging	1.00
IGL02234:Odc1	APN	12	17,598,621 (GRCm39)	missense	possibly damaging	0.95
IGL03007:Odc1	APN	12	17,598,811 (GRCm39)	missense	probably benign	0.01
F5426:Odc1	UTSW	12	17,599,424 (GRCm39)	critical splice acceptor site	probably null
H8562:Odc1	UTSW	12	17,598,038 (GRCm39)	missense	probably benign	0.11
R1648:Odc1	UTSW	12	17,598,538 (GRCm39)	splice site	probably benign
R2224:Odc1	UTSW	12	17,597,336 (GRCm39)	missense	probably benign	0.05
R2274:Odc1	UTSW	12	17,598,425 (GRCm39)	missense	probably benign	0.01
R3932:Odc1	UTSW	12	17,598,801 (GRCm39)	missense	probably benign	0.38
R4883:Odc1	UTSW	12	17,597,386 (GRCm39)	missense	possibly damaging	0.82
R4956:Odc1	UTSW	12	17,597,958 (GRCm39)	missense	probably damaging	1.00
R5036:Odc1	UTSW	12	17,598,020 (GRCm39)	missense	probably damaging	1.00
R6112:Odc1	UTSW	12	17,599,473 (GRCm39)	missense	probably benign	0.23
R6261:Odc1	UTSW	12	17,600,655 (GRCm39)	missense	probably benign	0.00
R7092:Odc1	UTSW	12	17,598,314 (GRCm39)	missense	possibly damaging	0.90
R7101:Odc1	UTSW	12	17,597,319 (GRCm39)	missense	probably benign
R7243:Odc1	UTSW	12	17,600,058 (GRCm39)	nonsense	probably null
R7638:Odc1	UTSW	12	17,600,003 (GRCm39)	missense	probably damaging	0.99
R8496:Odc1	UTSW	12	17,598,396 (GRCm39)	missense	probably damaging	1.00
R8924:Odc1	UTSW	12	17,598,329 (GRCm39)	missense	possibly damaging	0.93
R9218:Odc1	UTSW	12	17,598,312 (GRCm39)	nonsense	probably null
R9647:Odc1	UTSW	12	17,598,614 (GRCm39)	missense	possibly damaging	0.93
Z1177:Odc1	UTSW	12	17,600,723 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TTTGACATGGCAGTGAGTACAC -3'
(R):5'- GCTACCGTACACCAGTCAATG -3'

Sequencing Primer
(F):5'- TACACGGGACTTGTTCAAGG -3'
(R):5'- CCAGTCAATGGGATTGCAGC -3'

Posted On

2014-06-30