Mutagenetix > Incidental Mutation

Incidental Mutation 'R1939:Slc16a4'

213794

Institutional Source

Beutler Lab

Gene Symbol

Slc16a4

Ensembl Gene

ENSMUSG00000027896

Gene Name

solute carrier family 16 (monocarboxylic acid transporters), member 4

Synonyms

MMRRC Submission

039957-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1939 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

107198546-107219431 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 107208317 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Valine at position 276 (M276V)

Ref Sequence

ENSEMBL: ENSMUSP00000102334 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029502] [ENSMUST00000106723]

AlphaFold

Q8R0M8

Predicted Effect

probably benign
Transcript: ENSMUST00000029502
AA Change: M276V

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000029502
Gene: ENSMUSG00000027896
AA Change: M276V

Domain	Start	End	E-Value	Type
Pfam:MFS_1	27	373	8.2e-26	PFAM
Pfam:MFS_1	305	499	2e-17	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000106723
AA Change: M276V

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000102334
Gene: ENSMUSG00000027896
AA Change: M276V

Domain	Start	End	E-Value	Type
Pfam:MFS_1	27	375	2.1e-28	PFAM
Pfam:MFS_1	327	462	3.6e-11	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153322

Coding Region Coverage

1x: 97.5%
3x: 97.0%
10x: 95.6%
20x: 93.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700020L24Rik	T	A	11: 83,331,130 (GRCm39)	W11R	probably damaging	Het
2700049A03Rik	A	G	12: 71,207,186 (GRCm39)		probably null	Het
4933409G03Rik	T	C	2: 68,419,328 (GRCm39)	S26P	possibly damaging	Het
Ace2	A	T	X: 162,939,524 (GRCm39)	M123L	possibly damaging	Het
Acot3	A	G	12: 84,105,325 (GRCm39)	N264S	probably benign	Het
Acvr1c	A	T	2: 58,173,517 (GRCm39)	N248K	probably damaging	Het
Adam22	A	T	5: 8,380,015 (GRCm39)	F94L	probably damaging	Het
Adarb2	T	C	13: 8,253,358 (GRCm39)		probably null	Het
Aldh1b1	A	G	4: 45,802,755 (GRCm39)	M98V	possibly damaging	Het
Arfgef2	T	A	2: 166,715,548 (GRCm39)	V1331D	probably damaging	Het
Atf2	G	A	2: 73,676,563 (GRCm39)	P184S	probably damaging	Het
Atp8b3	A	T	10: 80,361,220 (GRCm39)	C785*	probably null	Het
Birc6	T	C	17: 74,977,332 (GRCm39)	S4362P	probably damaging	Het
Brd10	A	G	19: 29,731,077 (GRCm39)	F712S	possibly damaging	Het
Chn1	A	G	2: 73,455,245 (GRCm39)	C39R	probably damaging	Het
Cngb1	C	A	8: 96,026,320 (GRCm39)	G154W	probably damaging	Het
Cntnap5b	A	G	1: 99,895,073 (GRCm39)	H115R	probably benign	Het
Col23a1	A	G	11: 51,442,816 (GRCm39)	D159G	unknown	Het
Coro7	T	C	16: 4,446,596 (GRCm39)	E843G	probably benign	Het
Dnase2a	G	T	8: 85,637,524 (GRCm39)	A309S	possibly damaging	Het
Dync2h1	A	G	9: 7,139,159 (GRCm39)		probably null	Het
Engase	T	A	11: 118,370,012 (GRCm39)	N97K	probably damaging	Het
Fam83b	A	T	9: 76,400,362 (GRCm39)	M247K	probably damaging	Het
Fer	T	C	17: 64,280,123 (GRCm39)	S65P	probably damaging	Het
Fgf10	A	G	13: 118,925,688 (GRCm39)	R156G	probably damaging	Het
Gm10608	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	9: 118,989,784 (GRCm39)		probably null	Het
Gm904	T	C	13: 50,798,772 (GRCm39)		probably null	Het
Gpat2	T	A	2: 127,277,879 (GRCm39)	*802K	probably null	Het
Hcfc2	G	T	10: 82,538,284 (GRCm39)	R107L	probably damaging	Het
Itga8	T	G	2: 12,305,657 (GRCm39)	D111A	probably damaging	Het
Jag1	C	G	2: 136,925,393 (GRCm39)	V1070L	possibly damaging	Het
Lama5	T	C	2: 179,832,714 (GRCm39)	N1646S	probably benign	Het
Lgals8	T	G	13: 12,474,069 (GRCm39)	I10L	probably benign	Het
Lrp1b	A	G	2: 40,587,601 (GRCm39)	S116P	unknown	Het
Mcpt1	A	T	14: 56,256,546 (GRCm39)	K94I	possibly damaging	Het
Mpnd	T	C	17: 56,322,920 (GRCm39)	F384S	probably damaging	Het
Mrgprb5	A	T	7: 47,818,686 (GRCm39)	N16K	probably benign	Het
Myo15b	A	G	11: 115,778,529 (GRCm39)	T1139A	probably benign	Het
Nat8f5	A	C	6: 85,794,801 (GRCm39)	I53R	possibly damaging	Het
Nav1	A	T	1: 135,393,636 (GRCm39)	L1034Q	probably damaging	Het
Nudt6	T	C	3: 37,459,379 (GRCm39)	Y54C	probably damaging	Het
Or10j3b	G	T	1: 173,043,499 (GRCm39)	A94S	probably benign	Het
Or5p58	A	G	7: 107,694,348 (GRCm39)	V143A	probably benign	Het
Or6c217	A	C	10: 129,737,970 (GRCm39)	M203R	probably damaging	Het
Or8b35	A	G	9: 37,904,385 (GRCm39)	N199S	probably benign	Het
Or8c15	T	A	9: 38,120,725 (GRCm39)	Y72*	probably null	Het
Osbpl8	A	T	10: 111,125,672 (GRCm39)	H784L	probably benign	Het
Osr1	T	G	12: 9,629,687 (GRCm39)	S187A	probably damaging	Het
Pcdhgc5	A	G	18: 37,955,003 (GRCm39)	Y759C	probably damaging	Het
Pkd1l2	G	T	8: 117,772,921 (GRCm39)	Y1035*	probably null	Het
Pla2g15	A	G	8: 106,889,927 (GRCm39)	T400A	probably damaging	Het
Pms1	A	C	1: 53,236,135 (GRCm39)	L715R	probably damaging	Het
Prkd1	T	C	12: 50,441,777 (GRCm39)	N254S	probably benign	Het
Prkdc	T	C	16: 15,653,777 (GRCm39)	V3868A	possibly damaging	Het
Ptprt	T	C	2: 161,769,560 (GRCm39)	N435S	probably benign	Het
Purb	T	C	11: 6,424,943 (GRCm39)	E315G	unknown	Het
Rap1b	A	T	10: 117,654,491 (GRCm39)	N116K	probably damaging	Het
Rmc1	T	C	18: 12,313,562 (GRCm39)	L15P	probably damaging	Het
Rp1l1	A	G	14: 64,267,042 (GRCm39)	N876S	probably benign	Het
Rps6ka4	T	A	19: 6,816,834 (GRCm39)	I114F	probably damaging	Het
Semp2l1	T	C	1: 32,584,627 (GRCm39)	I428V	probably damaging	Het
Sh3bp2	A	G	5: 34,708,963 (GRCm39)	N19D	probably damaging	Het
Slc17a1	A	G	13: 24,059,864 (GRCm39)	T172A	probably benign	Het
Slc4a7	C	T	14: 14,748,581 (GRCm38)	A320V	probably damaging	Het
Slco1a6	T	A	6: 142,078,956 (GRCm39)	Y113F	probably damaging	Het
Srsf6	C	T	2: 162,776,403 (GRCm39)		probably benign	Het
St3gal6	A	T	16: 58,293,924 (GRCm39)		probably null	Het
Tdp2	A	G	13: 25,025,260 (GRCm39)	D343G	probably benign	Het
Tecpr2	T	A	12: 110,899,603 (GRCm39)	L657Q	probably damaging	Het
Tet2	T	C	3: 133,194,399 (GRCm39)	T12A	possibly damaging	Het
Trappc6a	T	A	7: 19,248,426 (GRCm39)	F28I	probably damaging	Het
Trim32	G	A	4: 65,532,303 (GRCm39)	V287I	probably benign	Het
Trpd52l3	T	C	19: 29,981,289 (GRCm39)	S15P	probably damaging	Het
Tsnaxip1	A	G	8: 106,566,670 (GRCm39)	I169V	probably benign	Het
Ttc34	G	A	4: 154,950,139 (GRCm39)	A1031T	possibly damaging	Het
Ttll11	T	A	2: 35,830,765 (GRCm39)	Q18L	probably null	Het
Ttll8	A	T	15: 88,799,689 (GRCm39)	I584N	probably damaging	Het
Ubiad1	A	G	4: 148,528,468 (GRCm39)	L147P	probably damaging	Het
Ucp3	T	C	7: 100,129,871 (GRCm39)	V171A	probably benign	Het
Vmn1r174	T	A	7: 23,453,532 (GRCm39)	I66N	probably damaging	Het
Vmn2r13	T	C	5: 109,339,852 (GRCm39)	D41G	possibly damaging	Het
Vmn2r4	T	C	3: 64,305,976 (GRCm39)	D393G	probably benign	Het
Wipf2	C	T	11: 98,783,236 (GRCm39)	R221*	probably null	Het
Zfp976	C	A	7: 42,263,105 (GRCm39)	C244F	unknown	Het
Zmym5	A	G	14: 57,036,577 (GRCm39)	V190A	probably damaging	Het

Other mutations in Slc16a4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01065:Slc16a4	APN	3	107,210,416 (GRCm39)	missense	possibly damaging	0.67
IGL01311:Slc16a4	APN	3	107,199,821 (GRCm39)	missense	possibly damaging	0.83
IGL01509:Slc16a4	APN	3	107,218,750 (GRCm39)	critical splice acceptor site	probably null
IGL01780:Slc16a4	APN	3	107,210,415 (GRCm39)	missense	probably benign	0.00
IGL02294:Slc16a4	APN	3	107,208,384 (GRCm39)	missense	probably benign	0.00
IGL02350:Slc16a4	APN	3	107,210,415 (GRCm39)	missense	probably benign	0.00
IGL02357:Slc16a4	APN	3	107,210,415 (GRCm39)	missense	probably benign	0.00
IGL02792:Slc16a4	APN	3	107,206,193 (GRCm39)	missense	probably benign
IGL02873:Slc16a4	APN	3	107,208,111 (GRCm39)	missense	probably benign	0.00
IGL03001:Slc16a4	APN	3	107,218,858 (GRCm39)	missense	possibly damaging	0.91
IGL03002:Slc16a4	APN	3	107,208,102 (GRCm39)	missense	probably benign	0.07
R0370:Slc16a4	UTSW	3	107,208,413 (GRCm39)	missense	possibly damaging	0.66
R0525:Slc16a4	UTSW	3	107,205,255 (GRCm39)	splice site	probably benign
R1192:Slc16a4	UTSW	3	107,206,189 (GRCm39)	missense	probably benign	0.07
R1458:Slc16a4	UTSW	3	107,208,248 (GRCm39)	missense	probably benign	0.00
R2061:Slc16a4	UTSW	3	107,208,027 (GRCm39)	missense	probably benign	0.00
R2098:Slc16a4	UTSW	3	107,208,163 (GRCm39)	nonsense	probably null
R2102:Slc16a4	UTSW	3	107,211,819 (GRCm39)	splice site	probably null
R3411:Slc16a4	UTSW	3	107,208,188 (GRCm39)	missense	probably benign
R4983:Slc16a4	UTSW	3	107,208,176 (GRCm39)	missense	probably benign	0.00
R5394:Slc16a4	UTSW	3	107,199,758 (GRCm39)	missense	probably benign
R5804:Slc16a4	UTSW	3	107,206,280 (GRCm39)	missense	probably benign	0.04
R6077:Slc16a4	UTSW	3	107,208,381 (GRCm39)	missense	possibly damaging	0.91
R6626:Slc16a4	UTSW	3	107,208,512 (GRCm39)	missense	possibly damaging	0.95
R6693:Slc16a4	UTSW	3	107,210,380 (GRCm39)	missense	probably damaging	1.00
R6811:Slc16a4	UTSW	3	107,206,233 (GRCm39)	missense	probably benign	0.06
R6823:Slc16a4	UTSW	3	107,218,814 (GRCm39)	missense	probably benign	0.02
R6982:Slc16a4	UTSW	3	107,206,589 (GRCm39)	missense	probably benign	0.01
R7050:Slc16a4	UTSW	3	107,208,148 (GRCm39)	missense	probably benign
R7103:Slc16a4	UTSW	3	107,218,787 (GRCm39)	missense	probably damaging	1.00
R7608:Slc16a4	UTSW	3	107,210,443 (GRCm39)	missense	probably damaging	1.00
R7623:Slc16a4	UTSW	3	107,205,297 (GRCm39)	missense	possibly damaging	0.71
R8013:Slc16a4	UTSW	3	107,218,794 (GRCm39)	missense	probably damaging	1.00
R8014:Slc16a4	UTSW	3	107,218,794 (GRCm39)	missense	probably damaging	1.00
R8713:Slc16a4	UTSW	3	107,218,901 (GRCm39)	makesense	probably null
R8876:Slc16a4	UTSW	3	107,208,101 (GRCm39)	missense	probably benign	0.12
R9266:Slc16a4	UTSW	3	107,199,788 (GRCm39)	missense	probably benign	0.10
R9661:Slc16a4	UTSW	3	107,213,359 (GRCm39)	missense	probably benign
X0018:Slc16a4	UTSW	3	107,208,131 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- CTGCAACTGAACCAGAGGCATC -3'
(R):5'- CCAGCTACAGACACAAGGTAGG -3'

Sequencing Primer
(F):5'- TGAACCAGAGGCATCATACAAG -3'
(R):5'- GGAGGCATCCATTACGTCAATC -3'

Posted On

2014-07-14