Incidental Mutation 'R1943:Chst15'
ID 216378
Institutional Source Beutler Lab
Gene Symbol Chst15
Ensembl Gene ENSMUSG00000030930
Gene Name carbohydrate sulfotransferase 15
Synonyms 4631426J05Rik, GalNAcS-6ST, MAd5, MAd5
MMRRC Submission 039961-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.076) question?
Stock # R1943 (G1)
Quality Score 192
Status Not validated
Chromosome 7
Chromosomal Location 131837509-131918957 bp(-) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) A to T at 131864579 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000079105 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000077472] [ENSMUST00000080215] [ENSMUST00000124096]
AlphaFold Q91XQ5
Predicted Effect probably null
Transcript: ENSMUST00000077472
SMART Domains Protein: ENSMUSP00000076682
Gene: ENSMUSG00000030930

DomainStartEndE-ValueType
transmembrane domain 80 102 N/A INTRINSIC
Pfam:Sulfotransfer_3 254 502 4.2e-10 PFAM
Pfam:Sulfotransfer_1 369 524 1.1e-12 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000080215
SMART Domains Protein: ENSMUSP00000079105
Gene: ENSMUSG00000030930

DomainStartEndE-ValueType
transmembrane domain 80 102 N/A INTRINSIC
Pfam:Sulfotransfer_3 254 499 7.9e-9 PFAM
Pfam:Sulfotransfer_1 369 524 1.2e-12 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000124096
SMART Domains Protein: ENSMUSP00000130971
Gene: ENSMUSG00000030849

DomainStartEndE-ValueType
Pfam:Pkinase 1 118 4.8e-19 PFAM
Pfam:Pkinase_Tyr 1 118 1.7e-50 PFAM
low complexity region 146 160 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 94.3%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Chondroitin sulfate (CS) is a glycosaminoglycan which is an important structural component of the extracellular matrix and which links to proteins to form proteoglycans. Chondroitin sulfate E (CS-E) is an isomer of chondroitin sulfate in which the C-4 and C-6 hydroxyl groups are sulfated. This gene encodes a type II transmembrane glycoprotein that acts as a sulfotransferase to transfer sulfate to the C-6 hydroxal group of chondroitin sulfate. This gene has also been identified as being co-expressed with RAG1 in B-cells and as potentially acting as a B-cell surface signaling receptor. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2012]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased litter size and abnormal bone marrow-derived mast cell morphology. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 62 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A2m A G 6: 121,645,506 (GRCm39) N1017S possibly damaging Het
Abca8a T C 11: 109,960,689 (GRCm39) I610V probably benign Het
Acp5 C T 9: 22,040,900 (GRCm39) V108M probably damaging Het
Adam23 T C 1: 63,516,916 (GRCm39) probably null Het
Adam34 T A 8: 44,103,864 (GRCm39) T594S possibly damaging Het
Adam34 A T 8: 44,104,852 (GRCm39) N264K probably damaging Het
Arsa G A 15: 89,357,742 (GRCm39) T407I probably damaging Het
Bicc1 A G 10: 70,995,353 (GRCm39) S32P probably damaging Het
Cacna1i T A 15: 80,279,245 (GRCm39) D1995E probably benign Het
Cemip2 G A 19: 21,825,404 (GRCm39) probably null Het
Cntnap4 T A 8: 113,542,128 (GRCm39) F754I probably benign Het
Cpz C T 5: 35,669,772 (GRCm39) E302K probably damaging Het
Daw1 A T 1: 83,186,987 (GRCm39) I371F possibly damaging Het
Dennd1b C A 1: 139,096,690 (GRCm39) probably benign Het
Dhtkd1 T G 2: 5,937,293 (GRCm39) Q73P probably benign Het
Dmgdh T C 13: 93,847,878 (GRCm39) I525T probably benign Het
Dst C A 1: 34,267,450 (GRCm39) T4964K possibly damaging Het
Ercc3 A G 18: 32,379,663 (GRCm39) Y290C probably damaging Het
Fh1 C T 1: 175,437,344 (GRCm39) V252I probably benign Het
Gm13199 C T 2: 5,867,517 (GRCm39) probably benign Het
Il1rn T C 2: 24,238,611 (GRCm39) S82P possibly damaging Het
Lama4 T C 10: 38,973,134 (GRCm39) V1567A possibly damaging Het
Lamtor4 A G 5: 138,254,054 (GRCm39) probably null Het
Llgl1 A G 11: 60,596,842 (GRCm39) N148D probably benign Het
Lmo7 G T 14: 102,139,738 (GRCm39) G774V probably damaging Het
Luzp2 A T 7: 54,914,050 (GRCm39) K293M possibly damaging Het
Mknk1 T C 4: 115,720,223 (GRCm39) V83A probably damaging Het
Mug2 T C 6: 122,056,598 (GRCm39) V1181A probably benign Het
Myo16 G A 8: 10,644,905 (GRCm39) D1746N possibly damaging Het
Or1ad8 A G 11: 50,898,502 (GRCm39) I234M probably benign Het
Or2aj4 A T 16: 19,385,187 (GRCm39) W149R probably benign Het
Osbpl3 A G 6: 50,297,054 (GRCm39) I548T probably benign Het
Parp14 A G 16: 35,656,499 (GRCm39) Y1676H probably damaging Het
Phtf1 A T 3: 103,901,198 (GRCm39) K416* probably null Het
Pmp2 T C 3: 10,247,570 (GRCm39) T40A probably benign Het
Ptpra T C 2: 130,386,024 (GRCm39) M541T probably damaging Het
Rapgef6 A G 11: 54,548,089 (GRCm39) I753V possibly damaging Het
Rdh14 T C 12: 10,441,162 (GRCm39) V108A probably benign Het
Rnf38 A T 4: 44,138,748 (GRCm39) H248Q probably damaging Het
Rsph6a A C 7: 18,808,001 (GRCm39) Y388S probably damaging Het
Ryr2 T C 13: 11,746,609 (GRCm39) D1981G probably benign Het
Sf3a3 A G 4: 124,609,694 (GRCm39) K97E possibly damaging Het
Shisa9 A G 16: 12,085,620 (GRCm39) T394A probably benign Het
Slc43a2 T A 11: 75,436,567 (GRCm39) probably null Het
Slc45a1 A G 4: 150,728,734 (GRCm39) F23S probably benign Het
Slc7a10 T A 7: 34,899,723 (GRCm39) V435E probably benign Het
Snx15 A G 19: 6,178,096 (GRCm39) Y28H probably damaging Het
Spef2 T G 15: 9,663,280 (GRCm39) K834Q possibly damaging Het
Tdpoz2 G T 3: 93,559,230 (GRCm39) Y247* probably null Het
Tedc2 G A 17: 24,436,923 (GRCm39) R271W possibly damaging Het
Tfr2 C A 5: 137,577,183 (GRCm39) H378Q probably benign Het
Tigit T A 16: 43,469,581 (GRCm39) H170L probably benign Het
Tmem62 A T 2: 120,817,107 (GRCm39) Q91L probably benign Het
Tmtc1 G T 6: 148,327,416 (GRCm39) C32* probably null Het
Txndc12 G A 4: 108,713,407 (GRCm39) V90I probably benign Het
Vmn2r93 C A 17: 18,546,063 (GRCm39) T645K probably benign Het
Vmn2r96 C T 17: 18,806,664 (GRCm39) T345I probably benign Het
Vps13d A T 4: 144,882,427 (GRCm39) D1055E probably benign Het
Xirp2 A G 2: 67,342,959 (GRCm39) I1733M probably benign Het
Zfp512b T C 2: 181,230,208 (GRCm39) H516R probably damaging Het
Zfp606 T C 7: 12,227,615 (GRCm39) S521P probably damaging Het
Zfp715 A T 7: 42,949,054 (GRCm39) V302E possibly damaging Het
Other mutations in Chst15
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01710:Chst15 APN 7 131,872,236 (GRCm39) missense probably benign 0.22
IGL01879:Chst15 APN 7 131,871,994 (GRCm39) missense possibly damaging 0.94
IGL02355:Chst15 APN 7 131,868,401 (GRCm39) missense probably benign 0.26
IGL02362:Chst15 APN 7 131,868,401 (GRCm39) missense probably benign 0.26
IGL02826:Chst15 APN 7 131,868,475 (GRCm39) missense probably damaging 1.00
IGL02860:Chst15 APN 7 131,870,831 (GRCm39) missense probably benign
IGL02972:Chst15 APN 7 131,870,902 (GRCm39) missense probably damaging 1.00
IGL03266:Chst15 APN 7 131,871,805 (GRCm39) missense probably damaging 1.00
IGL03331:Chst15 APN 7 131,864,442 (GRCm39) missense probably damaging 1.00
IGL03375:Chst15 APN 7 131,872,186 (GRCm39) nonsense probably null
R1476:Chst15 UTSW 7 131,872,002 (GRCm39) missense possibly damaging 0.95
R1501:Chst15 UTSW 7 131,870,798 (GRCm39) nonsense probably null
R1518:Chst15 UTSW 7 131,871,855 (GRCm39) missense probably damaging 1.00
R2164:Chst15 UTSW 7 131,872,114 (GRCm39) missense probably damaging 0.97
R3947:Chst15 UTSW 7 131,849,604 (GRCm39) missense probably damaging 1.00
R4921:Chst15 UTSW 7 131,849,613 (GRCm39) missense probably benign 0.01
R5817:Chst15 UTSW 7 131,870,876 (GRCm39) missense probably damaging 0.99
R5817:Chst15 UTSW 7 131,870,873 (GRCm39) missense probably damaging 0.99
R5917:Chst15 UTSW 7 131,872,246 (GRCm39) missense probably benign
R6930:Chst15 UTSW 7 131,870,759 (GRCm39) missense possibly damaging 0.95
R7159:Chst15 UTSW 7 131,871,987 (GRCm39) missense probably damaging 1.00
R7911:Chst15 UTSW 7 131,872,251 (GRCm39) missense probably benign 0.12
R8282:Chst15 UTSW 7 131,871,879 (GRCm39) missense probably benign
R8342:Chst15 UTSW 7 131,849,615 (GRCm39) missense probably benign 0.15
R9011:Chst15 UTSW 7 131,872,246 (GRCm39) missense probably benign
R9093:Chst15 UTSW 7 131,870,646 (GRCm39) critical splice donor site probably null
R9329:Chst15 UTSW 7 131,868,520 (GRCm39) missense possibly damaging 0.46
R9352:Chst15 UTSW 7 131,872,257 (GRCm39) missense probably damaging 1.00
Predicted Primers
Posted On 2014-08-01