Incidental Mutation 'R1951:Irx5'
ID 217304
Institutional Source Beutler Lab
Gene Symbol Irx5
Ensembl Gene ENSMUSG00000031737
Gene Name Iroquois homeobox 5
Synonyms
MMRRC Submission 039965-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1951 (G1)
Quality Score 225
Status Validated
Chromosome 8
Chromosomal Location 93084424-93088084 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 93086438 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Aspartic acid at position 174 (N174D)
Ref Sequence ENSEMBL: ENSMUSP00000147339 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000034184] [ENSMUST00000210246]
AlphaFold Q9JKQ4
Predicted Effect noncoding transcript
Transcript: ENSMUST00000034183
Predicted Effect probably damaging
Transcript: ENSMUST00000034184
AA Change: N174D

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000034184
Gene: ENSMUSG00000031737
AA Change: N174D

DomainStartEndE-ValueType
HOX 112 177 1.14e-12 SMART
low complexity region 185 202 N/A INTRINSIC
low complexity region 245 257 N/A INTRINSIC
low complexity region 307 327 N/A INTRINSIC
IRO 328 345 2.28e-5 SMART
low complexity region 351 369 N/A INTRINSIC
low complexity region 375 389 N/A INTRINSIC
low complexity region 417 439 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000179029
Predicted Effect noncoding transcript
Transcript: ENSMUST00000179222
Predicted Effect noncoding transcript
Transcript: ENSMUST00000179421
Predicted Effect noncoding transcript
Transcript: ENSMUST00000180102
Predicted Effect probably damaging
Transcript: ENSMUST00000210246
AA Change: N174D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Meta Mutation Damage Score 0.3238 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 94.2%
Validation Efficiency 98% (84/86)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced body size, narrow eye opening, and impaired retinal cone bipolar cell development. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 82 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca15 C T 7: 119,960,655 (GRCm39) R706C probably damaging Het
Adcy3 T C 12: 4,258,624 (GRCm39) F847S probably benign Het
Alyref C G 11: 120,486,758 (GRCm39) V168L probably damaging Het
Arhgap28 G A 17: 68,208,336 (GRCm39) A44V probably benign Het
Asap3 C T 4: 135,954,767 (GRCm39) R60* probably null Het
Baz1b T A 5: 135,245,593 (GRCm39) N347K probably benign Het
Best2 T A 8: 85,737,858 (GRCm39) N179I possibly damaging Het
Bfar C T 16: 13,519,970 (GRCm39) S276L probably damaging Het
Bloc1s3 A G 7: 19,241,483 (GRCm39) V15A possibly damaging Het
Borcs5 A G 6: 134,687,230 (GRCm39) H196R unknown Het
Calhm3 A G 19: 47,140,256 (GRCm39) L279P probably benign Het
Cand1 A T 10: 119,043,925 (GRCm39) probably benign Het
Car15 T C 16: 17,655,269 (GRCm39) D57G possibly damaging Het
Casp12 G A 9: 5,348,959 (GRCm39) probably null Het
Cd93 T C 2: 148,283,778 (GRCm39) T523A probably benign Het
Ces4a G A 8: 105,864,729 (GRCm39) G69S probably damaging Het
Ckap5 A G 2: 91,386,837 (GRCm39) probably benign Het
Col6a5 G A 9: 105,814,156 (GRCm39) R619W unknown Het
Colec12 G A 18: 9,859,975 (GRCm39) probably null Het
Crmp1 G A 5: 37,430,699 (GRCm39) V222I possibly damaging Het
Crnkl1 G A 2: 145,770,120 (GRCm39) A241V probably damaging Het
Ctbp2 A G 7: 132,616,756 (GRCm39) S60P probably benign Het
Cyp2c68 T C 19: 39,700,972 (GRCm39) Y282C probably benign Het
Dhx36 T C 3: 62,391,694 (GRCm39) I551V probably damaging Het
Dlg5 T A 14: 24,206,537 (GRCm39) probably benign Het
Dlgap1 A T 17: 71,068,306 (GRCm39) I300F probably damaging Het
Dmd T A X: 82,874,123 (GRCm39) I1342N probably damaging Het
Dnah6 T A 6: 73,061,704 (GRCm39) R2794* probably null Het
Fcgr1 G A 3: 96,194,386 (GRCm39) T167I probably damaging Het
Fgl1 G T 8: 41,650,387 (GRCm39) F187L probably benign Het
Fras1 T A 5: 96,860,242 (GRCm39) V2096E probably benign Het
Gm10647 A G 9: 66,705,762 (GRCm39) probably benign Het
Gm14226 G A 2: 154,866,255 (GRCm39) D71N possibly damaging Het
Grip2 A T 6: 91,760,829 (GRCm39) I284N probably damaging Het
Hirip3 A G 7: 126,462,038 (GRCm39) R19G probably damaging Het
Ift70b A G 2: 75,767,586 (GRCm39) L389P probably damaging Het
Itgal A G 7: 126,929,317 (GRCm39) D1078G probably damaging Het
Khdc3 T C 9: 73,010,519 (GRCm39) V123A possibly damaging Het
Klhl13 A G X: 23,127,820 (GRCm39) probably benign Het
Klhl42 T C 6: 146,993,321 (GRCm39) S98P probably damaging Het
Lrp5 T C 19: 3,670,298 (GRCm39) N602S possibly damaging Het
Lrrd1 A T 5: 3,901,488 (GRCm39) I598F probably damaging Het
Ltbp1 A G 17: 75,458,372 (GRCm39) T318A probably benign Het
Mfsd6 A G 1: 52,748,517 (GRCm39) F116S probably damaging Het
Ncam1 T C 9: 49,456,492 (GRCm39) I486V probably benign Het
Nptx1 A G 11: 119,434,006 (GRCm39) probably null Het
Nrg1 T C 8: 32,408,221 (GRCm39) Y4C probably damaging Het
Nsf G A 11: 103,773,702 (GRCm39) R271* probably null Het
Or5d39 A G 2: 87,979,641 (GRCm39) S241P possibly damaging Het
Or8g24 T A 9: 38,989,580 (GRCm39) I154F probably benign Het
Or8k18 G C 2: 86,085,440 (GRCm39) T199S probably benign Het
Or8k21 T A 2: 86,145,504 (GRCm39) N42I probably damaging Het
Or8k24 A T 2: 86,215,855 (GRCm39) H302Q probably benign Het
Pax2 A G 19: 44,777,271 (GRCm39) T155A probably benign Het
Pdia4 A G 6: 47,780,813 (GRCm39) Y212H probably damaging Het
Pgr A G 9: 8,946,954 (GRCm39) probably benign Het
Pitpnm3 G T 11: 71,965,450 (GRCm39) H112N possibly damaging Het
Ppargc1b G T 18: 61,431,848 (GRCm39) T1000K possibly damaging Het
Psd3 C A 8: 68,416,139 (GRCm39) C586F probably benign Het
Ptprm A T 17: 67,247,575 (GRCm39) S587T probably benign Het
Rabep2 A T 7: 126,037,736 (GRCm39) R169S possibly damaging Het
Rad21l T C 2: 151,497,179 (GRCm39) R309G probably benign Het
Rbm12 T C 2: 155,939,133 (GRCm39) R380G probably damaging Het
Selp A G 1: 163,954,081 (GRCm39) N127S probably benign Het
Slc12a2 A G 18: 58,012,467 (GRCm39) T197A possibly damaging Het
Slc22a18 C T 7: 143,029,984 (GRCm39) T17I probably damaging Het
Sptbn4 T C 7: 27,065,868 (GRCm39) E2026G possibly damaging Het
Srf A T 17: 46,862,633 (GRCm39) M285K possibly damaging Het
Tanc1 T C 2: 59,622,156 (GRCm39) V425A possibly damaging Het
Tle4 A T 19: 14,493,721 (GRCm39) probably null Het
Tmem132e A G 11: 82,335,908 (GRCm39) R905G possibly damaging Het
Tmem200c A T 17: 69,147,983 (GRCm39) I189F probably damaging Het
Trappc13 T C 13: 104,311,150 (GRCm39) Q87R probably benign Het
Trpm7 A T 2: 126,673,219 (GRCm39) D511E probably damaging Het
Ttn A T 2: 76,632,634 (GRCm39) I14140N possibly damaging Het
Virma A G 4: 11,513,907 (GRCm39) D587G probably benign Het
Vmn1r72 A G 7: 11,403,731 (GRCm39) L239P probably damaging Het
Vmn2r68 A G 7: 84,883,102 (GRCm39) F217L probably damaging Het
Vps13c T C 9: 67,881,041 (GRCm39) probably null Het
Vrtn T C 12: 84,695,973 (GRCm39) V241A probably damaging Het
Xdh T C 17: 74,214,653 (GRCm39) E764G probably damaging Het
Zranb3 A T 1: 127,927,136 (GRCm39) V343D probably damaging Het
Other mutations in Irx5
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01735:Irx5 APN 8 93,087,331 (GRCm39) missense probably damaging 1.00
IGL01870:Irx5 APN 8 93,086,405 (GRCm39) missense probably damaging 1.00
IGL01985:Irx5 APN 8 93,086,155 (GRCm39) splice site probably benign
IGL02481:Irx5 APN 8 93,087,307 (GRCm39) missense probably damaging 1.00
IGL02597:Irx5 APN 8 93,087,400 (GRCm39) missense possibly damaging 0.93
IGL03257:Irx5 APN 8 93,087,258 (GRCm39) missense probably benign 0.00
R0784:Irx5 UTSW 8 93,087,118 (GRCm39) missense probably benign
R1498:Irx5 UTSW 8 93,086,514 (GRCm39) missense probably damaging 1.00
R1762:Irx5 UTSW 8 93,086,272 (GRCm39) missense probably damaging 1.00
R1783:Irx5 UTSW 8 93,086,316 (GRCm39) missense probably damaging 1.00
R1953:Irx5 UTSW 8 93,086,438 (GRCm39) missense probably damaging 1.00
R2019:Irx5 UTSW 8 93,084,992 (GRCm39) missense probably damaging 1.00
R3875:Irx5 UTSW 8 93,086,793 (GRCm39) missense probably benign 0.00
R3942:Irx5 UTSW 8 93,086,314 (GRCm39) missense probably damaging 0.98
R4361:Irx5 UTSW 8 93,085,025 (GRCm39) missense probably damaging 0.99
R4574:Irx5 UTSW 8 93,084,890 (GRCm39) missense probably damaging 0.99
R4994:Irx5 UTSW 8 93,087,409 (GRCm39) missense probably damaging 1.00
R5579:Irx5 UTSW 8 93,086,541 (GRCm39) missense probably benign 0.01
R5884:Irx5 UTSW 8 93,087,258 (GRCm39) missense possibly damaging 0.95
R5988:Irx5 UTSW 8 93,087,299 (GRCm39) nonsense probably null
R6017:Irx5 UTSW 8 93,084,878 (GRCm39) missense probably damaging 1.00
R6339:Irx5 UTSW 8 93,086,481 (GRCm39) missense probably damaging 0.99
R6466:Irx5 UTSW 8 93,086,354 (GRCm39) missense probably damaging 1.00
R6595:Irx5 UTSW 8 93,086,247 (GRCm39) missense probably damaging 1.00
R7344:Irx5 UTSW 8 93,086,183 (GRCm39) missense probably benign 0.24
R8166:Irx5 UTSW 8 93,086,712 (GRCm39) splice site probably null
R8215:Irx5 UTSW 8 93,086,241 (GRCm39) missense possibly damaging 0.77
R8396:Irx5 UTSW 8 93,086,962 (GRCm39) missense probably benign 0.12
R8695:Irx5 UTSW 8 93,087,327 (GRCm39) missense probably damaging 1.00
R8991:Irx5 UTSW 8 93,087,135 (GRCm39) nonsense probably null
R9412:Irx5 UTSW 8 93,086,351 (GRCm39) missense probably damaging 1.00
R9522:Irx5 UTSW 8 93,087,259 (GRCm39) missense possibly damaging 0.84
R9708:Irx5 UTSW 8 93,087,118 (GRCm39) missense probably benign 0.25
Predicted Primers PCR Primer
(F):5'- TATCACCCTTATGCAGCACC -3'
(R):5'- TTTCGAGTCCCGCTCAACATAC -3'

Sequencing Primer
(F):5'- GGCTCCTATCCTTATGGGGAC -3'
(R):5'- AGTCCCGCTCAACATACCCTTTC -3'
Posted On 2014-08-01