Mutagenetix > Incidental Mutation

Incidental Mutation 'R1952:Olfm3'

217362

Institutional Source

Beutler Lab

Gene Symbol

Olfm3

Ensembl Gene

ENSMUSG00000027965

Gene Name

olfactomedin 3

Synonyms

B230206G02Rik, optimedin

MMRRC Submission

039966-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.103) question?

Stock #

R1952 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

114697727-114919371 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 114895589 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Valine at position 157 (E157V)

Ref Sequence

ENSEMBL: ENSMUSP00000121097 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000051309] [ENSMUST00000081752] [ENSMUST00000149158]

AlphaFold

P63056

Predicted Effect

probably null
Transcript: ENSMUST00000051309
AA Change: E190V

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000060985
Gene: ENSMUSG00000027965
AA Change: E190V

Domain	Start	End	E-Value	Type
signal peptide	1	16	N/A	INTRINSIC
Pfam:Noelin-1	46	145	3.9e-52	PFAM
Blast:OLF	162	207	3e-8	BLAST
OLF	220	470	4.33e-114	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000081752
AA Change: E170V

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000080448
Gene: ENSMUSG00000027965
AA Change: E170V

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
Pfam:Noelin-1	25	125	7.6e-54	PFAM
Blast:OLF	142	187	3e-8	BLAST
OLF	200	450	4.33e-114	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000149158
AA Change: E157V

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000121097
Gene: ENSMUSG00000027965
AA Change: E157V

Domain	Start	End	E-Value	Type
Pfam:Noelin-1	12	112	2.5e-51	PFAM
Blast:OLF	129	174	1e-8	BLAST
Blast:OLF	187	210	1e-7	BLAST

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.7%
20x: 93.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700024G13Rik	A	G	14: 32,110,293 (GRCm39)	V6A	possibly damaging	Het
Accsl	G	T	2: 93,689,778 (GRCm39)	H376Q	probably damaging	Het
Adgrg1	T	C	8: 95,735,119 (GRCm39)		probably null	Het
Alyref	C	G	11: 120,486,758 (GRCm39)	V168L	probably damaging	Het
Ankrd12	T	C	17: 66,338,566 (GRCm39)	D128G	probably damaging	Het
Bcl2l14	A	G	6: 134,409,329 (GRCm39)	Y301C	probably damaging	Het
Camsap3	A	G	8: 3,654,789 (GRCm39)	T804A	probably damaging	Het
Capn11	A	T	17: 45,953,885 (GRCm39)	W154R	probably damaging	Het
Cd44	T	A	2: 102,683,432 (GRCm39)	T201S	probably damaging	Het
Cers4	G	A	8: 4,573,461 (GRCm39)	W319*	probably null	Het
Col27a1	T	A	4: 63,202,130 (GRCm39)		probably null	Het
Crnkl1	G	A	2: 145,770,120 (GRCm39)	A241V	probably damaging	Het
Cyp2c68	T	C	19: 39,700,972 (GRCm39)	Y282C	probably benign	Het
Dmd	T	A	X: 82,874,123 (GRCm39)	I1342N	probably damaging	Het
Dusp7	T	A	9: 106,248,028 (GRCm39)	C219S	probably benign	Het
Epha7	A	G	4: 28,950,474 (GRCm39)	N759S	probably damaging	Het
Fat1	T	C	8: 45,486,963 (GRCm39)	V3413A	probably benign	Het
Gls2	A	G	10: 128,045,231 (GRCm39)	H576R	probably benign	Het
Gm4884	G	A	7: 40,693,671 (GRCm39)	V547M	probably benign	Het
Hap1	A	G	11: 100,243,105 (GRCm39)	V174A	probably damaging	Het
Il12rb2	A	G	6: 67,269,300 (GRCm39)	S838P	probably damaging	Het
Ints8	T	C	4: 11,221,150 (GRCm39)	I742V	probably benign	Het
Katnal2	G	T	18: 77,067,707 (GRCm39)	S411R	probably benign	Het
Lrp1	A	C	10: 127,403,300 (GRCm39)	V2091G	probably damaging	Het
Mettl21c	A	T	1: 44,056,368 (GRCm39)	D20E	probably damaging	Het
Mib1	A	T	18: 10,812,077 (GRCm39)	E991D	possibly damaging	Het
Mip	T	C	10: 128,061,772 (GRCm39)	S8P	possibly damaging	Het
Mllt6	T	C	11: 97,568,048 (GRCm39)	S826P	probably damaging	Het
Mlst8	AT	ATT	17: 24,696,987 (GRCm39)		probably null	Het
Myrfl	C	T	10: 116,658,716 (GRCm39)	V414I	probably benign	Het
Nbeal1	T	C	1: 60,273,999 (GRCm39)	V409A	probably damaging	Het
Nin	T	A	12: 70,077,700 (GRCm39)	Q1035L	probably damaging	Het
Nlgn1	T	A	3: 25,490,464 (GRCm39)	D421V	probably damaging	Het
Nlrp10	A	G	7: 108,523,770 (GRCm39)	V570A	probably benign	Het
Or8g24	T	A	9: 38,989,580 (GRCm39)	I154F	probably benign	Het
Or8g37	T	C	9: 39,731,363 (GRCm39)	S143P	probably benign	Het
Otud7a	A	G	7: 63,300,624 (GRCm39)	D21G	probably damaging	Het
Pax2	A	G	19: 44,777,271 (GRCm39)	T155A	probably benign	Het
Pcf11	A	T	7: 92,310,546 (GRCm39)	S481T	probably damaging	Het
Prkab2	T	C	3: 97,573,943 (GRCm39)	V194A	probably benign	Het
Prl3a1	G	A	13: 27,454,136 (GRCm39)	G38E	possibly damaging	Het
Psmb8	T	C	17: 34,419,884 (GRCm39)	V246A	probably damaging	Het
Ptpn12	A	T	5: 21,203,308 (GRCm39)	V490E	probably benign	Het
Ptprm	A	T	17: 67,247,575 (GRCm39)	S587T	probably benign	Het
Qars1	G	A	9: 108,390,380 (GRCm39)	R427H	probably benign	Het
R3hdml	T	C	2: 163,340,216 (GRCm39)	F128L	probably benign	Het
Rapgef4	A	G	2: 72,038,471 (GRCm39)	M541V	probably benign	Het
Rhbdf1	G	A	11: 32,164,277 (GRCm39)	R234*	probably null	Het
Rufy1	A	T	11: 50,297,233 (GRCm39)	D406E	probably benign	Het
Satb1	A	T	17: 52,047,173 (GRCm39)	L683Q	probably damaging	Het
Satb2	T	C	1: 56,938,229 (GRCm39)	T132A	probably damaging	Het
Sbspon	A	G	1: 15,930,519 (GRCm39)	S156P	probably damaging	Het
Shb	A	T	4: 45,458,347 (GRCm39)		probably null	Het
She	A	G	3: 89,756,792 (GRCm39)	K282R	possibly damaging	Het
Slc25a13	A	G	6: 6,152,482 (GRCm39)	L85P	probably damaging	Het
Slc7a13	A	T	4: 19,841,578 (GRCm39)	H475L	probably benign	Het
Sorl1	C	T	9: 41,957,920 (GRCm39)	V575I	probably benign	Het
Spag9	T	A	11: 93,988,184 (GRCm39)	C833S	possibly damaging	Het
Speer2	A	C	16: 69,654,052 (GRCm39)	N232K	probably damaging	Het
Syncrip	A	T	9: 88,358,927 (GRCm39)	M194K	probably damaging	Het
Sytl3	A	C	17: 6,995,732 (GRCm39)	T171P	probably damaging	Het
Taar7f	T	A	10: 23,925,747 (GRCm39)	Y114N	probably damaging	Het
Tamalin	T	C	15: 101,122,381 (GRCm39)	Y67H	probably benign	Het
Tap1	C	G	17: 34,412,481 (GRCm39)	P506R	probably damaging	Het
Tle6	T	C	10: 81,431,319 (GRCm39)	D212G	possibly damaging	Het
Trim80	G	T	11: 115,332,155 (GRCm39)	E116*	probably null	Het
Ttll4	A	G	1: 74,726,718 (GRCm39)	R745G	probably damaging	Het
Vdac2	A	T	14: 21,887,947 (GRCm39)	I85F	possibly damaging	Het
Vmn1r188	A	G	13: 22,272,309 (GRCm39)	R88G	probably damaging	Het
Washc2	T	C	6: 116,232,052 (GRCm39)	S821P	possibly damaging	Het
Wdhd1	T	C	14: 47,507,647 (GRCm39)	Y213C	probably damaging	Het
Wdr55	C	A	18: 36,893,437 (GRCm39)	P33Q	probably damaging	Het
Yrdc	C	T	4: 124,745,739 (GRCm39)	A32V	probably benign	Het
Zfp608	T	A	18: 55,030,851 (GRCm39)	K1030*	probably null	Het
Zfp618	T	A	4: 63,050,555 (GRCm39)		probably null	Het

Other mutations in Olfm3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01656:Olfm3	APN	3	114,916,282 (GRCm39)	missense	probably damaging	1.00
IGL01686:Olfm3	APN	3	114,916,497 (GRCm39)	missense	probably benign	0.00
IGL01732:Olfm3	APN	3	114,890,649 (GRCm39)	missense	possibly damaging	0.82
IGL02539:Olfm3	APN	3	114,895,579 (GRCm39)	missense	possibly damaging	0.93
IGL02580:Olfm3	APN	3	114,916,157 (GRCm39)	missense	probably damaging	1.00
IGL02999:Olfm3	APN	3	114,916,397 (GRCm39)	missense	probably damaging	1.00
IGL03142:Olfm3	APN	3	114,890,679 (GRCm39)	missense	probably damaging	0.97
IGL03239:Olfm3	APN	3	114,916,243 (GRCm39)	missense	probably damaging	0.99
R0361:Olfm3	UTSW	3	114,914,622 (GRCm39)	missense	probably damaging	1.00
R0373:Olfm3	UTSW	3	114,916,454 (GRCm39)	missense	probably damaging	0.99
R0505:Olfm3	UTSW	3	114,916,330 (GRCm39)	missense	possibly damaging	0.46
R0689:Olfm3	UTSW	3	114,916,194 (GRCm39)	missense	probably benign	0.28
R0973:Olfm3	UTSW	3	114,895,635 (GRCm39)	missense	probably benign	0.00
R0973:Olfm3	UTSW	3	114,895,635 (GRCm39)	missense	probably benign	0.00
R0974:Olfm3	UTSW	3	114,895,635 (GRCm39)	missense	probably benign	0.00
R1253:Olfm3	UTSW	3	114,916,418 (GRCm39)	missense	probably damaging	0.98
R1293:Olfm3	UTSW	3	114,895,579 (GRCm39)	missense	possibly damaging	0.93
R2255:Olfm3	UTSW	3	114,915,842 (GRCm39)	splice site	probably null
R2334:Olfm3	UTSW	3	114,895,608 (GRCm39)	nonsense	probably null
R2510:Olfm3	UTSW	3	114,915,959 (GRCm39)	missense	probably damaging	1.00
R4222:Olfm3	UTSW	3	114,883,820 (GRCm39)	nonsense	probably null
R4716:Olfm3	UTSW	3	114,874,755 (GRCm39)	missense	probably benign	0.00
R4912:Olfm3	UTSW	3	114,895,589 (GRCm39)	missense	probably damaging	1.00
R5084:Olfm3	UTSW	3	114,698,202 (GRCm39)	critical splice donor site	probably null
R5649:Olfm3	UTSW	3	114,890,573 (GRCm39)	missense	probably damaging	0.99
R5681:Olfm3	UTSW	3	114,915,924 (GRCm39)	missense	probably benign	0.28
R5861:Olfm3	UTSW	3	114,916,052 (GRCm39)	missense	probably damaging	1.00
R5924:Olfm3	UTSW	3	114,916,187 (GRCm39)	missense	probably benign	0.44
R5929:Olfm3	UTSW	3	114,895,529 (GRCm39)	missense	probably damaging	0.97
R5958:Olfm3	UTSW	3	114,915,955 (GRCm39)	missense	probably damaging	0.99
R6166:Olfm3	UTSW	3	114,916,074 (GRCm39)	missense	probably damaging	1.00
R6299:Olfm3	UTSW	3	114,914,632 (GRCm39)	missense	probably damaging	1.00
R6804:Olfm3	UTSW	3	114,916,328 (GRCm39)	missense	probably benign	0.10
R7032:Olfm3	UTSW	3	114,883,805 (GRCm39)	missense	probably damaging	1.00
R7565:Olfm3	UTSW	3	114,916,393 (GRCm39)	missense	probably damaging	0.98
R7600:Olfm3	UTSW	3	114,890,589 (GRCm39)	missense	possibly damaging	0.65
R7976:Olfm3	UTSW	3	114,874,794 (GRCm39)	missense	probably benign	0.00
R8070:Olfm3	UTSW	3	114,895,604 (GRCm39)	missense	probably damaging	0.96
R8334:Olfm3	UTSW	3	114,916,206 (GRCm39)	missense	probably damaging	0.96
R8527:Olfm3	UTSW	3	114,916,196 (GRCm39)	missense	probably benign	0.10
R8542:Olfm3	UTSW	3	114,916,196 (GRCm39)	missense	probably benign	0.10
R8835:Olfm3	UTSW	3	114,916,061 (GRCm39)	missense	probably damaging	1.00
R9063:Olfm3	UTSW	3	114,914,582 (GRCm39)	missense	probably benign	0.36
R9594:Olfm3	UTSW	3	114,883,785 (GRCm39)	missense	probably damaging	1.00
R9690:Olfm3	UTSW	3	114,890,594 (GRCm39)	nonsense	probably null
R9690:Olfm3	UTSW	3	114,890,593 (GRCm39)	missense	probably benign	0.39
R9719:Olfm3	UTSW	3	114,916,091 (GRCm39)	nonsense	probably null
Z1088:Olfm3	UTSW	3	114,698,317 (GRCm39)	start gained	probably benign
Z1177:Olfm3	UTSW	3	114,874,750 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- AAGAACATAGCTGCCTTTTGTG -3'
(R):5'- CTGTAATTCAGGCCTGACTCTC -3'

Sequencing Primer
(F):5'- GTGTTTTGAATGACTCTTGGAAACAC -3'
(R):5'- AGGCCTGACTCTCTATAACTAGG -3'

Posted On

2014-08-01