Mutagenetix > Incidental Mutation

Incidental Mutation 'R0669:Trim66'

218858

Institutional Source

Beutler Lab

Gene Symbol

Trim66

Ensembl Gene

ENSMUSG00000031026

Gene Name

tripartite motif-containing 66

Synonyms

Tif1d, D7H11orf29

MMRRC Submission

038854-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.169) question?

Stock #

R0669 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

109048213-109107341 bp(-) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

T to A at 109054199 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000102352 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033339] [ENSMUST00000106739] [ENSMUST00000106741]

AlphaFold

Q924W6

Predicted Effect

probably benign
Transcript: ENSMUST00000033339

SMART Domains

Protein: ENSMUSP00000033339
Gene: ENSMUSG00000031026

Domain	Start	End	E-Value	Type
PHD	4	69	7.77e0	SMART
BBC	108	234	1.61e-39	SMART
low complexity region	318	333	N/A	INTRINSIC
low complexity region	452	486	N/A	INTRINSIC
low complexity region	517	530	N/A	INTRINSIC
low complexity region	568	581	N/A	INTRINSIC
PHD	998	1041	4.09e-10	SMART
BROMO	1069	1175	8.22e-27	SMART
low complexity region	1185	1199	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000106739

SMART Domains

Protein: ENSMUSP00000102350
Gene: ENSMUSG00000031026

Domain	Start	End	E-Value	Type
PHD	4	69	7.77e0	SMART
BBC	108	234	1.61e-39	SMART
low complexity region	318	333	N/A	INTRINSIC
low complexity region	452	486	N/A	INTRINSIC
low complexity region	517	530	N/A	INTRINSIC
low complexity region	568	581	N/A	INTRINSIC
PHD	998	1041	4.09e-10	SMART
BROMO	1069	1175	8.22e-27	SMART
low complexity region	1185	1199	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000106741

SMART Domains

Protein: ENSMUSP00000102352
Gene: ENSMUSG00000031026

Domain	Start	End	E-Value	Type
RING	28	78	2.38e-2	SMART
BBOX	102	140	1.48e0	SMART
PHD	106	171	7.77e0	SMART
RING	107	170	4.38e0	SMART
BBOX	162	203	4.21e-3	SMART
BBC	210	336	1.61e-39	SMART
low complexity region	420	435	N/A	INTRINSIC
low complexity region	554	588	N/A	INTRINSIC
low complexity region	619	632	N/A	INTRINSIC
low complexity region	670	683	N/A	INTRINSIC
PHD	1100	1143	4.09e-10	SMART
BROMO	1171	1277	8.22e-27	SMART
low complexity region	1287	1301	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.4%
3x: 98.9%
10x: 97.7%
20x: 95.8%

Validation Efficiency

99% (80/81)

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933427D14Rik	T	A	11: 72,089,671 (GRCm39)	H71L	possibly damaging	Het
Abcb11	C	A	2: 69,159,662 (GRCm39)	V10L	probably benign	Het
Abcb9	T	C	5: 124,200,950 (GRCm39)	T689A	probably damaging	Het
Adam22	A	G	5: 8,193,036 (GRCm39)		probably benign	Het
Adamts5	A	G	16: 85,696,614 (GRCm39)	I181T	probably benign	Het
Adamts9	A	T	6: 92,857,938 (GRCm39)	V231D	probably damaging	Het
Angptl6	C	T	9: 20,787,823 (GRCm39)	V197M	probably damaging	Het
Atp6v1c1	T	C	15: 38,677,772 (GRCm39)	V99A	probably benign	Het
Cacna2d3	A	G	14: 29,189,906 (GRCm39)	V110A	probably benign	Het
Ccdc32	A	G	2: 118,849,648 (GRCm39)		probably benign	Het
Cela3b	T	C	4: 137,155,841 (GRCm39)	H22R	probably benign	Het
Cep44	T	C	8: 56,994,008 (GRCm39)	T190A	possibly damaging	Het
Chsy1	T	C	7: 65,821,435 (GRCm39)	C557R	probably damaging	Het
Cntd1	A	G	11: 101,178,324 (GRCm39)	T308A	probably damaging	Het
Cutal	T	C	2: 34,775,878 (GRCm39)		probably benign	Het
Dipk1b	A	G	2: 26,524,878 (GRCm39)	T93A	probably benign	Het
Dna2	A	G	10: 62,792,768 (GRCm39)	D261G	probably damaging	Het
Dnhd1	T	A	7: 105,342,911 (GRCm39)	S1418R	probably benign	Het
Dnpep	A	G	1: 75,288,422 (GRCm39)		probably benign	Het
Dock7	A	T	4: 98,875,716 (GRCm39)	Y1075N	probably benign	Het
Eif2s1	C	T	12: 78,928,012 (GRCm39)		probably benign	Het
Ess2	T	C	16: 17,725,419 (GRCm39)	Y221C	probably damaging	Het
Fer1l6	T	C	15: 58,425,573 (GRCm39)		probably null	Het
Gm5592	T	C	7: 40,805,254 (GRCm39)		probably benign	Het
Ipp	A	G	4: 116,395,073 (GRCm39)	Y536C	probably damaging	Het
Krt72	T	C	15: 101,686,740 (GRCm39)	E402G	probably damaging	Het
Lamb3	T	C	1: 193,014,638 (GRCm39)	L599P	probably damaging	Het
Lingo2	T	A	4: 35,709,120 (GRCm39)	T287S	probably benign	Het
Lipo3	T	A	19: 33,537,025 (GRCm39)	T232S	probably benign	Het
Lrrc63	G	A	14: 75,363,550 (GRCm39)	H194Y	probably benign	Het
Map3k13	A	G	16: 21,725,274 (GRCm39)	T416A	probably benign	Het
Mcm3	A	T	1: 20,875,153 (GRCm39)		probably null	Het
Mms22l	T	C	4: 24,517,223 (GRCm39)	V258A	probably benign	Het
Mrpl46	A	T	7: 78,432,631 (GRCm39)	L49*	probably null	Het
Mrs2	T	C	13: 25,177,742 (GRCm39)	T369A	possibly damaging	Het
Mtrf1	T	A	14: 79,656,708 (GRCm39)	Y403*	probably null	Het
Muc20	G	A	16: 32,614,850 (GRCm39)	P176S	unknown	Het
Mup21	C	T	4: 62,068,964 (GRCm39)	C9Y	unknown	Het
Mup-ps21	A	T	4: 61,949,007 (GRCm39)		noncoding transcript	Het
Mybph	T	G	1: 134,125,081 (GRCm39)		probably null	Het
Mypn	A	G	10: 62,970,702 (GRCm39)		probably benign	Het
Nav2	T	C	7: 49,058,431 (GRCm39)	S124P	probably damaging	Het
Nrros	T	C	16: 31,962,241 (GRCm39)	D556G	probably damaging	Het
Numa1	A	C	7: 101,648,884 (GRCm39)	I872L	probably benign	Het
Or14c40	A	G	7: 86,313,544 (GRCm39)	I225V	possibly damaging	Het
Or2a7	C	T	6: 43,150,938 (GRCm39)	T6I	probably benign	Het
Or2h2c	G	C	17: 37,422,347 (GRCm39)	L176V	probably benign	Het
Or4c11	A	T	2: 88,695,272 (GRCm39)	M108L	probably benign	Het
Or5p52	T	A	7: 107,502,446 (GRCm39)	I174K	probably damaging	Het
Pcdhb9	A	T	18: 37,535,308 (GRCm39)	N434I	probably damaging	Het
Pigq	A	T	17: 26,155,736 (GRCm39)		probably null	Het
Plxna2	T	G	1: 194,471,145 (GRCm39)	V972G	probably damaging	Het
Psma3	G	A	12: 71,035,269 (GRCm39)		probably benign	Het
Ptpn13	A	G	5: 103,703,975 (GRCm39)	T1336A	probably benign	Het
Rdh7	T	C	10: 127,720,598 (GRCm39)	D258G	probably benign	Het
Serpinb6c	A	G	13: 34,083,252 (GRCm39)	I54T	probably damaging	Het
Sh2d7	A	T	9: 54,448,633 (GRCm39)	Y218F	probably benign	Het
Shfl	AGAGGAGGAGGAGGAGGAGGAGGAGGA	AGAGGAGGAGGAGGAGGAGGAGGA	9: 20,785,013 (GRCm39)		probably benign	Het
Slc12a8	A	T	16: 33,371,274 (GRCm39)	I137F	possibly damaging	Het
Smarca2	T	C	19: 26,683,600 (GRCm39)	V1153A	possibly damaging	Het
Smc6	A	T	12: 11,339,165 (GRCm39)	I334L	probably benign	Het
Sorcs1	A	G	19: 50,230,380 (GRCm39)		probably benign	Het
Taar8c	A	G	10: 23,977,401 (GRCm39)	L137P	probably damaging	Het
Tcam1	A	T	11: 106,176,252 (GRCm39)	D326V	possibly damaging	Het
Telo2	A	T	17: 25,324,797 (GRCm39)	V461D	probably benign	Het
Tmprss7	A	T	16: 45,498,325 (GRCm39)	C351*	probably null	Het
Ube2d1	G	T	10: 71,097,940 (GRCm39)	H32N	probably benign	Het
Ubp1	T	C	9: 113,793,736 (GRCm39)		probably benign	Het
Vma21	C	T	X: 70,863,763 (GRCm39)	T81M	probably damaging	Het
Vmn1r113	T	C	7: 20,521,345 (GRCm39)	S46P	probably benign	Het
Wars1	T	C	12: 108,831,944 (GRCm39)	S374G	probably benign	Het
Wbp1	T	C	6: 83,096,326 (GRCm39)	D277G	possibly damaging	Het
Zfp939	C	A	7: 39,123,209 (GRCm39)		noncoding transcript	Het

Other mutations in Trim66

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01539:Trim66	APN	7	109,054,273 (GRCm39)	missense	probably benign	0.02
IGL01758:Trim66	APN	7	109,085,252 (GRCm39)	critical splice donor site	probably null
IGL01982:Trim66	APN	7	109,057,970 (GRCm39)	missense	probably benign	0.00
IGL01983:Trim66	APN	7	109,057,458 (GRCm39)	nonsense	probably null
IGL02149:Trim66	APN	7	109,060,109 (GRCm39)	missense	possibly damaging	0.66
IGL02392:Trim66	APN	7	109,059,481 (GRCm39)	missense	probably benign	0.01
IGL02483:Trim66	APN	7	109,076,837 (GRCm39)	splice site	probably benign
IGL02832:Trim66	APN	7	109,059,704 (GRCm39)	missense	probably damaging	1.00
IGL02945:Trim66	APN	7	109,059,383 (GRCm39)	nonsense	probably null
IGL03085:Trim66	APN	7	109,057,952 (GRCm39)	missense	probably benign	0.17
PIT1430001:Trim66	UTSW	7	109,074,454 (GRCm39)	missense	probably damaging	0.99
R0326:Trim66	UTSW	7	109,059,379 (GRCm39)	missense	probably benign	0.00
R0358:Trim66	UTSW	7	109,059,383 (GRCm39)	nonsense	probably null
R0401:Trim66	UTSW	7	109,074,471 (GRCm39)	missense	probably damaging	0.98
R0470:Trim66	UTSW	7	109,056,749 (GRCm39)	splice site	probably benign
R0568:Trim66	UTSW	7	109,059,902 (GRCm39)	missense	probably benign	0.00
R0980:Trim66	UTSW	7	109,054,877 (GRCm39)	missense	probably damaging	1.00
R1015:Trim66	UTSW	7	109,054,440 (GRCm39)	missense	probably damaging	1.00
R1078:Trim66	UTSW	7	109,071,526 (GRCm39)	missense	probably damaging	1.00
R1099:Trim66	UTSW	7	109,074,661 (GRCm39)	missense	probably benign	0.34
R1181:Trim66	UTSW	7	109,083,784 (GRCm39)	critical splice donor site	probably null
R1497:Trim66	UTSW	7	109,083,826 (GRCm39)	missense	probably benign	0.00
R1583:Trim66	UTSW	7	109,054,287 (GRCm39)	missense	probably damaging	1.00
R1843:Trim66	UTSW	7	109,075,046 (GRCm39)	missense	probably damaging	0.99
R1998:Trim66	UTSW	7	109,083,784 (GRCm39)	critical splice donor site	probably null
R2016:Trim66	UTSW	7	109,071,439 (GRCm39)	critical splice donor site	probably null
R2143:Trim66	UTSW	7	109,074,320 (GRCm39)	missense	probably damaging	0.98
R2144:Trim66	UTSW	7	109,074,320 (GRCm39)	missense	probably damaging	0.98
R2145:Trim66	UTSW	7	109,074,320 (GRCm39)	missense	probably damaging	0.98
R3945:Trim66	UTSW	7	109,071,475 (GRCm39)	missense	possibly damaging	0.94
R4012:Trim66	UTSW	7	109,057,338 (GRCm39)	missense	probably damaging	0.98
R4464:Trim66	UTSW	7	109,076,897 (GRCm39)	missense	possibly damaging	0.51
R4473:Trim66	UTSW	7	109,081,202 (GRCm39)	missense	probably damaging	1.00
R4729:Trim66	UTSW	7	109,055,267 (GRCm39)	critical splice donor site	probably null
R4730:Trim66	UTSW	7	109,082,276 (GRCm39)	missense	probably damaging	1.00
R4775:Trim66	UTSW	7	109,056,796 (GRCm39)	nonsense	probably null
R4819:Trim66	UTSW	7	109,056,793 (GRCm39)	missense	probably damaging	1.00
R5269:Trim66	UTSW	7	109,056,797 (GRCm39)	missense	probably benign	0.00
R5557:Trim66	UTSW	7	109,082,944 (GRCm39)	missense	probably benign	0.06
R5832:Trim66	UTSW	7	109,054,409 (GRCm39)	missense	probably damaging	1.00
R6220:Trim66	UTSW	7	109,082,300 (GRCm39)	missense	probably damaging	0.97
R6243:Trim66	UTSW	7	109,059,481 (GRCm39)	missense	probably benign	0.01
R6374:Trim66	UTSW	7	109,085,269 (GRCm39)	missense	probably benign
R6450:Trim66	UTSW	7	109,059,945 (GRCm39)	missense	probably benign	0.09
R6543:Trim66	UTSW	7	109,075,086 (GRCm39)	missense	probably benign	0.01
R6788:Trim66	UTSW	7	109,076,961 (GRCm39)	missense	probably damaging	1.00
R6842:Trim66	UTSW	7	109,059,983 (GRCm39)	missense	probably benign	0.00
R7169:Trim66	UTSW	7	109,054,328 (GRCm39)	missense	probably benign	0.25
R7257:Trim66	UTSW	7	109,059,451 (GRCm39)	missense	probably damaging	1.00
R7328:Trim66	UTSW	7	109,056,958 (GRCm39)	missense	probably damaging	0.99
R7616:Trim66	UTSW	7	109,082,956 (GRCm39)	missense	probably damaging	0.99
R8423:Trim66	UTSW	7	109,074,599 (GRCm39)	missense	possibly damaging	0.77
R8855:Trim66	UTSW	7	109,081,188 (GRCm39)	missense	probably damaging	1.00
R9130:Trim66	UTSW	7	109,076,896 (GRCm39)	missense	possibly damaging	0.90
R9137:Trim66	UTSW	7	109,074,330 (GRCm39)	missense	probably damaging	0.99
R9640:Trim66	UTSW	7	109,074,825 (GRCm39)	missense	probably damaging	1.00
RF013:Trim66	UTSW	7	109,059,960 (GRCm39)	missense	probably damaging	0.99
RF024:Trim66	UTSW	7	109,059,947 (GRCm39)	missense	possibly damaging	0.62

Predicted Primers

PCR Primer
(F):5'- TCTAGCCACGGTAGGCACTGATAC -3'
(R):5'- AGACAAATGCTTTGCCCAGCCC -3'

Sequencing Primer
(F):5'- ATCTGTGAACTTGCTAGAGGACC -3'
(R):5'- GCCCCAGCAAGAGGATTCAG -3'

Posted On

2014-08-21