Incidental Mutation 'R0137:Rnmt'
ID22073
Institutional Source Beutler Lab
Gene Symbol Rnmt
Ensembl Gene ENSMUSG00000009535
Gene NameRNA (guanine-7-) methyltransferase
Synonyms
MMRRC Submission 038422-MU
Accession Numbers
Is this an essential gene? Probably essential (E-score: 0.883) question?
Stock #R0137 (G1)
Quality Score206
Status Validated (trace)
Chromosome18
Chromosomal Location68300355-68324852 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) G to A at 68313700 bp
ZygosityHeterozygous
Amino Acid Change Methionine to Isoleucine at position 265 (M265I)
Ref Sequence ENSEMBL: ENSMUSP00000025427 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000009679] [ENSMUST00000025427] [ENSMUST00000131075] [ENSMUST00000139111]
Predicted Effect probably benign
Transcript: ENSMUST00000009679
AA Change: M265I

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
SMART Domains Protein: ENSMUSP00000009679
Gene: ENSMUSG00000009535
AA Change: M265I

DomainStartEndE-ValueType
Pfam:Pox_MCEL 125 464 7.5e-128 PFAM
Pfam:Methyltransf_31 184 352 1.2e-8 PFAM
Pfam:Methyltransf_11 191 305 3.8e-9 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000025427
AA Change: M265I

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
SMART Domains Protein: ENSMUSP00000025427
Gene: ENSMUSG00000009535
AA Change: M265I

DomainStartEndE-ValueType
Pfam:Pox_MCEL 125 317 2.8e-79 PFAM
Pfam:Methyltransf_23 163 349 8.2e-10 PFAM
Pfam:Methyltransf_31 184 375 4.3e-9 PFAM
Pfam:Methyltransf_18 186 308 1.4e-7 PFAM
Pfam:Methyltransf_11 191 305 5.1e-9 PFAM
Pfam:Pox_MCEL 313 409 2.1e-20 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000131075
SMART Domains Protein: ENSMUSP00000122741
Gene: ENSMUSG00000009535

DomainStartEndE-ValueType
Pfam:Pox_MCEL 125 205 3.1e-30 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000139111
SMART Domains Protein: ENSMUSP00000123500
Gene: ENSMUSG00000009535

DomainStartEndE-ValueType
Pfam:Pox_MCEL 125 240 1.2e-46 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000139554
Predicted Effect noncoding transcript
Transcript: ENSMUST00000151833
Meta Mutation Damage Score 0.252 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.2%
  • 10x: 96.1%
  • 20x: 91.8%
Validation Efficiency 95% (94/99)
Allele List at MGI
Other mutations in this stock
Total: 91 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700092M07Rik A G 19: 8,740,857 probably benign Het
4931406P16Rik A T 7: 34,239,219 W246R probably damaging Het
6430548M08Rik A T 8: 120,151,376 H190L possibly damaging Het
Adap1 A G 5: 139,293,221 probably benign Het
Adgra3 C T 5: 49,963,840 probably benign Het
Adgre5 A T 8: 83,724,898 V527E probably damaging Het
Anapc5 A T 5: 122,800,632 Y360N probably damaging Het
Angptl6 C A 9: 20,878,387 A70S probably benign Het
Ankdd1a C A 9: 65,510,328 K137N probably null Het
Ccdc170 T C 10: 4,546,950 probably benign Het
Ccdc51 A G 9: 109,091,630 E195G probably damaging Het
Cdc37 A T 9: 21,142,130 C204S possibly damaging Het
Cfap36 T C 11: 29,222,431 probably benign Het
Col6a2 C A 10: 76,596,425 G965C probably damaging Het
Csn1s2a G A 5: 87,778,967 S53N possibly damaging Het
Dab2ip T C 2: 35,692,376 probably null Het
Dhx58 A G 11: 100,696,997 V578A probably damaging Het
Diaph1 G T 18: 37,891,849 Q520K unknown Het
Eefsec C A 6: 88,297,649 K444N probably benign Het
Eftud2 A T 11: 102,868,617 H153Q possibly damaging Het
Eif5b T G 1: 38,019,243 S209A probably benign Het
Exosc2 T A 2: 31,672,485 Y46N probably damaging Het
F2 C T 2: 91,625,730 G562D probably damaging Het
Fgf23 G A 6: 127,080,165 G148D probably damaging Het
Fmnl3 G C 15: 99,322,738 probably benign Het
Fstl5 G A 3: 76,707,479 G179R probably damaging Het
Gart T A 16: 91,625,394 Q745L probably benign Het
Gmeb1 T A 4: 132,232,108 M212L probably benign Het
Gpaa1 T C 15: 76,334,781 Y548H probably damaging Het
Gpatch1 T C 7: 35,287,242 E763G probably damaging Het
Grm8 T A 6: 27,762,390 I279F probably damaging Het
Hcls1 T A 16: 36,951,174 H147Q probably damaging Het
Hpcal1 A C 12: 17,786,388 D73A probably damaging Het
Il22ra1 T C 4: 135,751,006 S463P probably benign Het
Itgbl1 G A 14: 123,840,686 probably null Het
Izumo3 G T 4: 92,147,200 probably benign Het
Kcna5 A T 6: 126,533,383 L594Q probably damaging Het
Kif13a A T 13: 46,764,603 D409E probably benign Het
Kif9 A T 9: 110,485,038 I39F probably damaging Het
Klri2 C T 6: 129,732,208 R227H possibly damaging Het
Lamc3 G A 2: 31,908,616 G445S probably damaging Het
Lctl A G 9: 64,117,698 probably benign Het
Lrp4 T C 2: 91,494,982 L1384P probably damaging Het
Mcm9 G A 10: 53,563,430 S549L possibly damaging Het
Ms4a15 G A 19: 10,979,333 probably benign Het
Mtor T C 4: 148,470,624 V901A possibly damaging Het
Nckap1l A T 15: 103,481,964 I721F probably benign Het
Nemp2 T C 1: 52,645,429 V298A probably benign Het
Npc1l1 T A 11: 6,228,148 K421* probably null Het
Npr1 C T 3: 90,455,937 V879M probably damaging Het
Olfr1368 A G 13: 21,142,166 V297A possibly damaging Het
Olfr638 A G 7: 104,003,502 T82A probably benign Het
Osgin1 A T 8: 119,442,480 I39F possibly damaging Het
Phip G C 9: 82,927,191 probably null Het
Pkdrej G T 15: 85,821,567 P56Q possibly damaging Het
Plcxd2 A G 16: 45,980,526 Y112H probably damaging Het
Plekha1 C T 7: 130,897,446 T155M probably damaging Het
Prkdc T C 16: 15,740,332 probably null Het
Prss1 A G 6: 41,462,561 H76R probably damaging Het
Psg23 T C 7: 18,614,633 D83G probably benign Het
Ptprd T A 4: 76,136,903 Q196L probably benign Het
Ranbp3l A T 15: 9,062,987 H292L probably damaging Het
Ranbp6 T C 19: 29,809,697 E1085G probably benign Het
Rccd1 A G 7: 80,320,578 V97A possibly damaging Het
Rchy1 T C 5: 91,957,599 S48G probably benign Het
Robo3 A T 9: 37,425,344 M376K probably benign Het
Rrp12 T C 19: 41,873,850 D898G probably benign Het
Scg3 A T 9: 75,663,180 probably benign Het
Sec31b A T 19: 44,534,382 M57K probably damaging Het
Slc17a6 A C 7: 51,666,144 I387L probably benign Het
Speer4a T A 5: 26,035,984 Q170L possibly damaging Het
Srsf9 A G 5: 115,332,201 D146G possibly damaging Het
Ss18 A G 18: 14,655,143 M90T probably damaging Het
Syna A T 5: 134,559,460 F212I possibly damaging Het
Thsd1 A G 8: 22,243,039 H34R probably damaging Het
Tmem143 T C 7: 45,897,662 I84T probably benign Het
Trim50 T C 5: 135,366,633 V281A probably damaging Het
Trp53i11 C A 2: 93,199,351 probably benign Het
Ttc25 A G 11: 100,563,568 E393G probably damaging Het
Ttll4 C T 1: 74,679,692 T234I possibly damaging Het
Ttyh1 A T 7: 4,124,720 I136F possibly damaging Het
Ube2f T C 1: 91,262,254 probably benign Het
Vcl T A 14: 20,987,015 L227* probably null Het
Vmn1r222 A C 13: 23,232,804 C80G probably damaging Het
Vps13b G T 15: 35,926,219 A3889S probably benign Het
Vps8 T C 16: 21,504,386 probably benign Het
Zbtb44 A G 9: 31,066,710 Y422C probably damaging Het
Zfp180 A G 7: 24,105,733 S526G possibly damaging Het
Zfp518a A C 19: 40,915,866 E1413A probably damaging Het
Zfp629 T A 7: 127,611,686 Y317F probably damaging Het
Zfp804b T C 5: 6,770,534 E843G probably benign Het
Other mutations in Rnmt
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02231:Rnmt APN 18 68314081 nonsense probably null
talenti UTSW 18 68319214 missense probably damaging 0.98
IGL03098:Rnmt UTSW 18 68306002 missense probably damaging 0.98
R0712:Rnmt UTSW 18 68307788 critical splice donor site probably null
R1493:Rnmt UTSW 18 68313707 missense probably damaging 1.00
R1541:Rnmt UTSW 18 68307782 missense probably damaging 1.00
R1606:Rnmt UTSW 18 68311653 missense possibly damaging 0.83
R2224:Rnmt UTSW 18 68305783 start gained probably benign
R3114:Rnmt UTSW 18 68314008 missense probably benign 0.13
R3115:Rnmt UTSW 18 68314008 missense probably benign 0.13
R4424:Rnmt UTSW 18 68311671 missense probably null 0.07
R4705:Rnmt UTSW 18 68314125 missense probably damaging 1.00
R4722:Rnmt UTSW 18 68305881 missense probably damaging 0.98
R4732:Rnmt UTSW 18 68317960 intron probably benign
R5173:Rnmt UTSW 18 68321359 utr 3 prime probably benign
R5523:Rnmt UTSW 18 68313702 missense probably benign
R5579:Rnmt UTSW 18 68306115 missense possibly damaging 0.93
R5966:Rnmt UTSW 18 68311618 missense probably benign 0.16
R6322:Rnmt UTSW 18 68319214 missense probably damaging 0.98
R7149:Rnmt UTSW 18 68319151 missense not run
Z1088:Rnmt UTSW 18 68307674 missense probably benign 0.14
Predicted Primers PCR Primer
(F):5'- TGATTACCTGTCAGGGAACAGCTACTT -3'
(R):5'- ATCAAAGCCGTTGGCTCCCTTC -3'

Sequencing Primer
(F):5'- TCAGGGAACAGCTACTTTAAGAGC -3'
(R):5'- GCAGGTCAAGACATTCTTACTCAG -3'
Posted On2013-04-12