Mutagenetix > Incidental Mutation

Incidental Mutation 'R2045:Rnpc3'

221785

Institutional Source

Beutler Lab

Gene Symbol

Rnpc3

Ensembl Gene

ENSMUSG00000027981

Gene Name

RNA-binding region (RNP1, RRM) containing 3

Synonyms

C030014B17Rik, 2810441O16Rik

MMRRC Submission

040052-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2045 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

113398716-113423798 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 113402009 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 513 (K513E)

Ref Sequence

ENSEMBL: ENSMUSP00000102145 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000092154] [ENSMUST00000106535] [ENSMUST00000106536] [ENSMUST00000174147]

AlphaFold

Q3UZ01

Predicted Effect

probably benign
Transcript: ENSMUST00000092154
AA Change: K514E

PolyPhen 2 Score 0.159 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000089792
Gene: ENSMUSG00000027981
AA Change: K514E

Domain	Start	End	E-Value	Type
RRM	28	98	2.28e-9	SMART
low complexity region	218	253	N/A	INTRINSIC
low complexity region	371	382	N/A	INTRINSIC
RRM	419	497	1.35e-11	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000106535
AA Change: K513E

PolyPhen 2 Score 0.897 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000102145
Gene: ENSMUSG00000027981
AA Change: K513E

Domain	Start	End	E-Value	Type
RRM	28	98	2.28e-9	SMART
low complexity region	218	253	N/A	INTRINSIC
low complexity region	371	382	N/A	INTRINSIC
RRM	419	497	4.1e-11	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000106536
AA Change: K514E

PolyPhen 2 Score 0.159 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000102146
Gene: ENSMUSG00000027981
AA Change: K514E

Domain	Start	End	E-Value	Type
RRM	28	98	2.28e-9	SMART
low complexity region	218	253	N/A	INTRINSIC
low complexity region	371	382	N/A	INTRINSIC
RRM	419	497	1.35e-11	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132220

Predicted Effect

unknown
Transcript: ENSMUST00000153853
AA Change: K462E

SMART Domains

Protein: ENSMUSP00000115492
Gene: ENSMUSG00000027981
AA Change: K462E

Domain	Start	End	E-Value	Type
Blast:RRM	2	47	8e-22	BLAST
SCOP:d1urna_	3	53	4e-4	SMART
low complexity region	167	202	N/A	INTRINSIC
low complexity region	320	331	N/A	INTRINSIC
RRM	368	446	1.35e-11	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000174147

SMART Domains

Protein: ENSMUSP00000133875
Gene: ENSMUSG00000074264

Domain	Start	End	E-Value	Type
Pfam:Alpha-amylase	35	129	2e-10	PFAM

Meta Mutation Damage Score

0.1417

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.0%
20x: 94.6%

Validation Efficiency

100% (74/74)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Two types of spliceosomes catalyze splicing of pre-mRNAs. The major U2-type spliceosome is found in all eukaryotes and removes U2-type introns, which represent more than 99% of pre-mRNA introns. The minor U12-type spliceosome is found in some eukaryotes and removes U12-type introns, which are rare and have distinct splice consensus signals. The U12-type spliceosome consists of several small nuclear RNAs and associated proteins. This gene encodes a 65K protein that is a component of the U12-type spliceosome. This protein contains two RNA recognition motifs (RRMs), suggesting that it may contact one of the small nuclear RNAs of the minor spliceosome. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acta2	C	T	19: 34,220,799 (GRCm39)	G303E	probably damaging	Het
Adamts1	A	T	16: 85,592,864 (GRCm39)	Y515N	probably damaging	Het
Ankef1	T	C	2: 136,396,658 (GRCm39)	V695A	probably benign	Het
Ankrd63	C	A	2: 118,533,834 (GRCm39)		probably benign	Het
Asah2	A	T	19: 32,030,356 (GRCm39)	N105K	probably benign	Het
Atf2	A	C	2: 73,693,552 (GRCm39)	D3E	probably damaging	Het
Atp5pb	T	C	3: 105,851,190 (GRCm39)		probably benign	Het
Bag4	C	T	8: 26,259,516 (GRCm39)	A228T	probably benign	Het
Bms1	A	C	6: 118,369,588 (GRCm39)	L960W	probably damaging	Het
Cacna1c	A	G	6: 118,633,098 (GRCm39)	V977A	probably damaging	Het
Cadps2	A	G	6: 23,839,121 (GRCm39)	S6P	possibly damaging	Het
Capn8	A	G	1: 182,440,951 (GRCm39)	T462A	probably benign	Het
Cd226	T	C	18: 89,225,486 (GRCm39)	S128P	probably benign	Het
Cd33	G	T	7: 43,179,316 (GRCm39)	H278N	probably benign	Het
Cdh1	T	C	8: 107,392,814 (GRCm39)		probably benign	Het
Cfap54	T	C	10: 92,874,671 (GRCm39)		probably null	Het
Chit1	A	G	1: 134,078,882 (GRCm39)	I397M	probably benign	Het
Cic	C	A	7: 24,970,961 (GRCm39)	Q231K	possibly damaging	Het
Clca4b	A	G	3: 144,630,924 (GRCm39)	V312A	probably damaging	Het
Cngb1	T	A	8: 96,023,713 (GRCm39)		probably null	Het
Cyfip2	T	C	11: 46,140,616 (GRCm39)	I430V	probably benign	Het
Dnah12	A	G	14: 26,503,485 (GRCm39)	E1613G	probably null	Het
Dock2	T	C	11: 34,244,106 (GRCm39)		probably null	Het
Dync2h1	A	T	9: 7,160,171 (GRCm39)	F646I	probably damaging	Het
Eef1b2	A	T	1: 63,218,646 (GRCm39)	K144*	probably null	Het
Erap1	T	C	13: 74,817,569 (GRCm39)	V137A	probably benign	Het
Far1	A	T	7: 113,138,478 (GRCm39)		probably null	Het
Fbn2	A	T	18: 58,223,730 (GRCm39)	C807S	probably damaging	Het
Fgfr1	A	G	8: 26,048,231 (GRCm39)	K209R	probably benign	Het
Fpr-rs4	CAGGAA	CA	17: 18,242,596 (GRCm39)		probably null	Het
Frem2	A	T	3: 53,443,165 (GRCm39)	V2533D	probably damaging	Het
Hip1r	T	C	5: 124,138,794 (GRCm39)	M839T	probably benign	Het
Igfbp2	A	G	1: 72,891,310 (GRCm39)	S303G	probably benign	Het
Insyn2a	T	G	7: 134,520,159 (GRCm39)	K124Q	probably damaging	Het
Itga10	C	T	3: 96,559,054 (GRCm39)		probably benign	Het
Itgb3	T	G	11: 104,514,239 (GRCm39)	S27A	probably benign	Het
Kif21b	G	A	1: 136,088,051 (GRCm39)	D1015N	probably damaging	Het
Krt7	A	T	15: 101,321,365 (GRCm39)		probably null	Het
Krtdap	T	A	7: 30,490,010 (GRCm39)	F80L	probably benign	Het
Lcp1	A	T	14: 75,437,841 (GRCm39)	T84S	probably benign	Het
Lipi	G	A	16: 75,347,087 (GRCm39)	T444I	probably damaging	Het
Lrguk	A	T	6: 34,048,003 (GRCm39)	E316V	probably damaging	Het
Lypd1	G	A	1: 125,838,272 (GRCm39)		probably benign	Het
Med12l	A	T	3: 59,169,731 (GRCm39)	K1632*	probably null	Het
Mrgpra9	A	T	7: 46,885,583 (GRCm39)	M28K	probably benign	Het
Mylk	A	G	16: 34,774,023 (GRCm39)	K1291E	probably benign	Het
Nek4	T	A	14: 30,675,880 (GRCm39)	W72R	probably damaging	Het
Nudt8	T	C	19: 4,051,899 (GRCm39)	V170A	probably damaging	Het
Oosp3	T	A	19: 11,676,733 (GRCm39)	Y31N	probably benign	Het
Padi2	A	T	4: 140,665,241 (GRCm39)	R449W	probably damaging	Het
Pcf11	G	T	7: 92,311,087 (GRCm39)	N300K	probably damaging	Het
Pcsk5	T	C	19: 17,558,508 (GRCm39)	D633G	possibly damaging	Het
Phlpp2	T	A	8: 110,634,232 (GRCm39)	W271R	probably damaging	Het
Pikfyve	T	C	1: 65,292,512 (GRCm39)	V1276A	probably benign	Het
Pkhd1l1	A	T	15: 44,343,050 (GRCm39)	N176Y	probably damaging	Het
Pop5	T	G	5: 115,376,271 (GRCm39)	V33G	possibly damaging	Het
Prkag2	A	G	5: 25,152,580 (GRCm39)	F175L	possibly damaging	Het
Ptpn22	T	A	3: 103,781,337 (GRCm39)	D79E	possibly damaging	Het
Rab32	T	G	10: 10,426,577 (GRCm39)	D123A	probably damaging	Het
Senp1	A	T	15: 97,957,825 (GRCm39)	F358I	possibly damaging	Het
Sft2d2	A	G	1: 165,012,647 (GRCm39)	L83P	probably damaging	Het
Slc9c1	G	A	16: 45,400,613 (GRCm39)	R741H	probably damaging	Het
Smad4	A	T	18: 73,782,877 (GRCm39)	Y352*	probably null	Het
Tamm41	T	A	6: 114,993,056 (GRCm39)	Q232H	probably benign	Het
Tbx6	T	A	7: 126,382,055 (GRCm39)	L131Q	probably damaging	Het
Trappc10	T	C	10: 78,045,313 (GRCm39)		probably benign	Het
Trp53bp1	C	A	2: 121,034,964 (GRCm39)	A108S	probably benign	Het
Tut7	T	C	13: 59,948,470 (GRCm39)	Y215C	probably damaging	Het
Unc13b	G	A	4: 43,091,266 (GRCm39)	V31M	probably damaging	Het
Usp24	T	C	4: 106,258,177 (GRCm39)	M1525T	possibly damaging	Het
Vax2	G	A	6: 83,688,252 (GRCm39)		probably benign	Het
Vcan	T	A	13: 89,839,104 (GRCm39)	I2147L	probably benign	Het
Zbtb7a	C	A	10: 80,980,244 (GRCm39)	A146E	probably benign	Het
Zfp287	A	G	11: 62,618,395 (GRCm39)	L157P	probably damaging	Het

Other mutations in Rnpc3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02365:Rnpc3	APN	3	113,402,048 (GRCm39)	missense	probably damaging	1.00
IGL02750:Rnpc3	APN	3	113,415,588 (GRCm39)	missense	possibly damaging	0.81
R0316:Rnpc3	UTSW	3	113,423,622 (GRCm39)	missense	probably damaging	1.00
R0420:Rnpc3	UTSW	3	113,415,518 (GRCm39)	missense	probably benign	0.00
R0601:Rnpc3	UTSW	3	113,413,755 (GRCm39)	missense	probably benign	0.18
R1051:Rnpc3	UTSW	3	113,423,595 (GRCm39)	missense	possibly damaging	0.94
R1386:Rnpc3	UTSW	3	113,407,433 (GRCm39)	nonsense	probably null
R1865:Rnpc3	UTSW	3	113,415,559 (GRCm39)	nonsense	probably null
R1870:Rnpc3	UTSW	3	113,404,704 (GRCm39)	unclassified	probably benign
R4447:Rnpc3	UTSW	3	113,404,786 (GRCm39)	unclassified	probably benign
R4450:Rnpc3	UTSW	3	113,404,786 (GRCm39)	unclassified	probably benign
R4934:Rnpc3	UTSW	3	113,418,628 (GRCm39)	missense	possibly damaging	0.86
R5436:Rnpc3	UTSW	3	113,418,648 (GRCm39)	missense	probably damaging	1.00
R5474:Rnpc3	UTSW	3	113,409,158 (GRCm39)	nonsense	probably null
R5498:Rnpc3	UTSW	3	113,404,856 (GRCm39)	critical splice donor site	probably null
R5505:Rnpc3	UTSW	3	113,409,102 (GRCm39)	missense	probably damaging	0.98
R5868:Rnpc3	UTSW	3	113,410,360 (GRCm39)	splice site	probably null
R6123:Rnpc3	UTSW	3	113,402,705 (GRCm39)	splice site	probably null
R7220:Rnpc3	UTSW	3	113,422,004 (GRCm39)	missense	probably benign	0.01
R7240:Rnpc3	UTSW	3	113,410,480 (GRCm39)	missense	probably damaging	1.00
R7507:Rnpc3	UTSW	3	113,410,410 (GRCm39)	missense	probably benign
R7537:Rnpc3	UTSW	3	113,407,481 (GRCm39)	missense	probably benign
R7818:Rnpc3	UTSW	3	113,423,600 (GRCm39)	missense	probably damaging	1.00
R7872:Rnpc3	UTSW	3	113,416,096 (GRCm39)	nonsense	probably null
R8738:Rnpc3	UTSW	3	113,414,805 (GRCm39)	missense	probably benign	0.13
R9269:Rnpc3	UTSW	3	113,404,895 (GRCm39)	missense	probably damaging	0.97
R9375:Rnpc3	UTSW	3	113,404,913 (GRCm39)	missense	probably damaging	1.00
RF023:Rnpc3	UTSW	3	113,413,723 (GRCm39)	missense	probably damaging	0.98
X0012:Rnpc3	UTSW	3	113,423,558 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAGAAACCCCTTGCTGATAGGATG -3'
(R):5'- TGTGAAGATCATGCAAGAGTTATGG -3'

Sequencing Primer
(F):5'- ACCCCTTGCTGATAGGATGAATGG -3'
(R):5'- GACTTCTATGTTAGATACTGTA -3'

Posted On

2014-08-25