Mutagenetix > Incidental Mutation

Incidental Mutation 'R2047:Slc35f4'

222149

Institutional Source

Beutler Lab

Gene Symbol

Slc35f4

Ensembl Gene

ENSMUSG00000021852

Gene Name

solute carrier family 35, member F4

Synonyms

4930550L21Rik

MMRRC Submission

040054-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.125) question?

Stock #

R2047 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

49535976-49763354 bp(-) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

G to T at 49541029 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000119007 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074368] [ENSMUST00000138884]

AlphaFold

Q8BZK4

Predicted Effect

unknown
Transcript: ENSMUST00000037120
AA Change: Q110K

SMART Domains

Protein: ENSMUSP00000042471
Gene: ENSMUSG00000079246
AA Change: Q110K

Domain	Start	End	E-Value	Type
low complexity region	42	56	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000074368

SMART Domains

Protein: ENSMUSP00000073972
Gene: ENSMUSG00000021852

Domain	Start	End	E-Value	Type
low complexity region	22	30	N/A	INTRINSIC
transmembrane domain	123	145	N/A	INTRINSIC
transmembrane domain	160	182	N/A	INTRINSIC
Pfam:SLC35F	216	435	7.6e-8	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135254

Predicted Effect

probably benign
Transcript: ENSMUST00000138884

SMART Domains

Protein: ENSMUSP00000119007
Gene: ENSMUSG00000021852

Domain	Start	End	E-Value	Type
Pfam:EmrE	18	143	1e-12	PFAM
Pfam:EamA	57	135	8.4e-9	PFAM
Pfam:DUF914	68	314	4.8e-8	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000227634

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000228016

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.4%

Validation Efficiency

100% (57/57)

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933402N03Rik	A	G	7: 130,747,836 (GRCm39)	F52S	probably damaging	Het
Acot12	T	C	13: 91,931,122 (GRCm39)	S457P	probably damaging	Het
Adcy5	G	A	16: 35,110,478 (GRCm39)	V882M	possibly damaging	Het
Ahnak	A	G	19: 8,991,664 (GRCm39)	D4316G	possibly damaging	Het
Aldh1l2	G	A	10: 83,342,607 (GRCm39)	A401V	probably damaging	Het
Apol7e	A	G	15: 77,601,810 (GRCm39)	H136R	probably benign	Het
Arl5a	A	G	2: 52,302,072 (GRCm39)		probably null	Het
Asns	G	T	6: 7,680,093 (GRCm39)	A341E	probably damaging	Het
C7	A	G	15: 5,075,143 (GRCm39)	L183P	probably damaging	Het
Cacng2	C	T	15: 78,003,037 (GRCm39)	A19T	probably damaging	Het
Ccdc121rt2	A	G	5: 112,598,575 (GRCm39)	N374S	probably benign	Het
Ccr4	A	G	9: 114,321,633 (GRCm39)	F144S	probably damaging	Het
Ckap2	A	G	8: 22,658,763 (GRCm39)	V660A	probably benign	Het
Cramp1	A	T	17: 25,222,189 (GRCm39)	Y176*	probably null	Het
Dgki	A	G	6: 36,890,581 (GRCm39)	S922P	possibly damaging	Het
Drd5	C	T	5: 38,477,679 (GRCm39)	S224L	probably damaging	Het
Ei24	T	C	9: 36,691,459 (GRCm39)	K341E	probably benign	Het
Eno2	A	T	6: 124,744,659 (GRCm39)		probably benign	Het
Epb41l4a	T	C	18: 33,961,259 (GRCm39)	N425S	probably benign	Het
F13b	T	G	1: 139,435,961 (GRCm39)	C256G	probably damaging	Het
Gp6	A	T	7: 4,376,270 (GRCm39)		probably benign	Het
H2-Q7	A	T	17: 35,659,123 (GRCm39)	R191S	probably damaging	Het
Ivns1abp	T	A	1: 151,227,382 (GRCm39)	S63R	possibly damaging	Het
Kcnj16	A	G	11: 110,915,946 (GRCm39)		probably null	Het
Lpcat4	T	C	2: 112,075,142 (GRCm39)		probably null	Het
Lrrc14b	T	C	13: 74,511,561 (GRCm39)	K173R	probably benign	Het
Maml3	C	A	3: 51,597,866 (GRCm39)	R939S	probably damaging	Het
Mrgpra2b	C	T	7: 47,113,908 (GRCm39)	V249I	probably benign	Het
Mrpl46	T	A	7: 78,431,312 (GRCm39)	Y82F	probably damaging	Het
Mthfs	T	A	9: 89,097,356 (GRCm39)	I71N	probably damaging	Het
Nectin4	T	C	1: 171,212,720 (GRCm39)	V351A	possibly damaging	Het
Npas3	T	C	12: 54,115,612 (GRCm39)	F827L	probably damaging	Het
Nrp1	G	A	8: 129,224,577 (GRCm39)		probably benign	Het
Ocln	C	A	13: 100,671,632 (GRCm39)	A242S	probably damaging	Het
Or10ad1c	T	A	15: 98,084,920 (GRCm39)	T253S	probably damaging	Het
Or13g1	G	A	7: 85,956,012 (GRCm39)	T103I	probably damaging	Het
Or5d37	A	T	2: 87,924,237 (GRCm39)	N14K	probably benign	Het
Pappa	T	C	4: 65,149,378 (GRCm39)		probably benign	Het
Ptpn6	T	C	6: 124,698,752 (GRCm39)	T480A	probably benign	Het
Pycr1	A	T	11: 120,532,512 (GRCm39)	D168E	possibly damaging	Het
Rnf6	T	C	5: 146,148,674 (GRCm39)	T126A	probably damaging	Het
Slc25a39	G	A	11: 102,296,657 (GRCm39)		probably benign	Het
Sppl2a	C	T	2: 126,768,772 (GRCm39)	A112T	probably damaging	Het
Sptbn1	A	C	11: 30,088,360 (GRCm39)		probably benign	Het
Sqle	T	C	15: 59,197,907 (GRCm39)	Y376H	probably benign	Het
Terb1	A	T	8: 105,212,094 (GRCm39)	Y296N	probably damaging	Het
Ttbk2	T	C	2: 120,579,397 (GRCm39)	H506R	probably damaging	Het
Ttn	T	C	2: 76,737,879 (GRCm39)	D4220G	probably benign	Het
Tub	A	G	7: 108,625,939 (GRCm39)	D230G	probably benign	Het
Ube2d3	T	A	3: 135,170,967 (GRCm39)	I137K	probably benign	Het
Vldlr	G	T	19: 27,212,238 (GRCm39)	C84F	probably damaging	Het
Vmn1r54	A	T	6: 90,246,970 (GRCm39)	I295F	probably damaging	Het
Vmn2r56	A	G	7: 12,466,918 (GRCm39)	S39P	probably damaging	Het
Zfp358	A	G	8: 3,545,934 (GRCm39)	H172R	probably damaging	Het
Zfp619	T	C	7: 39,187,062 (GRCm39)	C1031R	probably damaging	Het
Zfp777	A	G	6: 48,021,280 (GRCm39)	I114T	probably benign	Het

Other mutations in Slc35f4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01511:Slc35f4	APN	14	49,536,334 (GRCm39)	missense	probably benign	0.15
IGL01640:Slc35f4	APN	14	49,556,225 (GRCm39)	missense	probably damaging	0.99
IGL01942:Slc35f4	APN	14	49,762,962 (GRCm39)	splice site	probably benign
IGL01990:Slc35f4	APN	14	49,541,626 (GRCm39)	critical splice donor site	probably null
IGL02097:Slc35f4	APN	14	49,543,703 (GRCm39)	missense	probably damaging	1.00
IGL02803:Slc35f4	APN	14	49,541,714 (GRCm39)	missense	probably benign	0.00
R0005:Slc35f4	UTSW	14	49,559,943 (GRCm39)	splice site	probably benign
R0238:Slc35f4	UTSW	14	49,541,713 (GRCm39)	missense	possibly damaging	0.78
R0238:Slc35f4	UTSW	14	49,541,713 (GRCm39)	missense	possibly damaging	0.78
R0239:Slc35f4	UTSW	14	49,541,713 (GRCm39)	missense	possibly damaging	0.78
R0239:Slc35f4	UTSW	14	49,541,713 (GRCm39)	missense	possibly damaging	0.78
R0764:Slc35f4	UTSW	14	49,543,796 (GRCm39)	splice site	probably benign
R1884:Slc35f4	UTSW	14	49,551,091 (GRCm39)	missense	probably damaging	1.00
R1916:Slc35f4	UTSW	14	49,541,380 (GRCm39)	intron	probably benign
R2239:Slc35f4	UTSW	14	49,543,660 (GRCm39)	critical splice donor site	probably null
R2380:Slc35f4	UTSW	14	49,543,660 (GRCm39)	critical splice donor site	probably null
R4273:Slc35f4	UTSW	14	49,541,758 (GRCm39)	missense	possibly damaging	0.81
R4420:Slc35f4	UTSW	14	49,551,034 (GRCm39)	unclassified	probably benign
R4425:Slc35f4	UTSW	14	49,556,307 (GRCm39)	missense	possibly damaging	0.85
R5261:Slc35f4	UTSW	14	49,540,946 (GRCm39)	intron	probably benign
R5398:Slc35f4	UTSW	14	49,536,304 (GRCm39)	missense	probably damaging	1.00
R5402:Slc35f4	UTSW	14	49,556,331 (GRCm39)	missense	probably damaging	1.00
R6310:Slc35f4	UTSW	14	49,559,914 (GRCm39)	missense	probably damaging	1.00
R6596:Slc35f4	UTSW	14	49,763,057 (GRCm39)	missense	probably damaging	1.00
R6729:Slc35f4	UTSW	14	49,556,417 (GRCm39)	missense	probably benign	0.16
R6864:Slc35f4	UTSW	14	49,556,310 (GRCm39)	missense	possibly damaging	0.55
R7427:Slc35f4	UTSW	14	49,536,355 (GRCm39)	missense	probably damaging	0.99
R7428:Slc35f4	UTSW	14	49,536,355 (GRCm39)	missense	probably damaging	0.99
R7559:Slc35f4	UTSW	14	49,541,732 (GRCm39)	missense	probably benign	0.03
R7596:Slc35f4	UTSW	14	49,543,666 (GRCm39)	missense	probably damaging	1.00
R7722:Slc35f4	UTSW	14	49,543,731 (GRCm39)	missense	probably benign	0.22
R8263:Slc35f4	UTSW	14	49,551,084 (GRCm39)	missense	probably damaging	1.00
R8525:Slc35f4	UTSW	14	49,541,681 (GRCm39)	missense	possibly damaging	0.56
R9198:Slc35f4	UTSW	14	49,556,377 (GRCm39)	missense	unknown
R9615:Slc35f4	UTSW	14	49,556,306 (GRCm39)	missense	probably benign	0.00
R9751:Slc35f4	UTSW	14	49,536,291 (GRCm39)	missense	possibly damaging	0.49
R9772:Slc35f4	UTSW	14	49,551,175 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GAGGAACAGGGTCCTCTTACATC -3'
(R):5'- AGCTAGAGCACTGAGATCAGC -3'

Sequencing Primer
(F):5'- GGGTCCTCTTACATCAAGTACAGG -3'
(R):5'- CTGAGATCAGCTGAGATGGAC -3'

Posted On

2014-08-25