Mutagenetix > Incidental Mutation

Incidental Mutation 'R2002:Zmynd11'

223232

Institutional Source

Beutler Lab

Gene Symbol

Zmynd11

Ensembl Gene

ENSMUSG00000021156

Gene Name

zinc finger, MYND domain containing 11

Synonyms

2210402G22Rik

MMRRC Submission

040012-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.650) question?

Stock #

R2002 (G1)

Quality Score

209

Status

Validated

Chromosome

Chromosomal Location

9734869-9815366 bp(-) (GRCm39)

Type of Mutation

splice site (54 bp from exon)

DNA Base Change (assembly)

T to A at 9739514 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000152352 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000062658] [ENSMUST00000110633] [ENSMUST00000110634] [ENSMUST00000110635] [ENSMUST00000110636] [ENSMUST00000110637] [ENSMUST00000110638] [ENSMUST00000222475] [ENSMUST00000130151] [ENSMUST00000223421] [ENSMUST00000220996] [ENSMUST00000157035]

AlphaFold

Q8R5C8

Predicted Effect

probably null
Transcript: ENSMUST00000062658
AA Change: R438*

SMART Domains

Protein: ENSMUSP00000059767
Gene: ENSMUSG00000021156
AA Change: R438*

Domain	Start	End	E-Value	Type
BROMO	97	203	1.03e-18	SMART
PWWP	224	275	1.96e-21	SMART
low complexity region	318	331	N/A	INTRINSIC
low complexity region	351	362	N/A	INTRINSIC
coiled coil region	433	473	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000110633
AA Change: R508*

SMART Domains

Protein: ENSMUSP00000106263
Gene: ENSMUSG00000021156
AA Change: R508*

Domain	Start	End	E-Value	Type
PHD	62	106	4.19e-7	SMART
RING	66	105	8.31e-1	SMART
BROMO	111	217	1.03e-18	SMART
PWWP	238	289	1.96e-21	SMART
low complexity region	332	345	N/A	INTRINSIC
low complexity region	418	437	N/A	INTRINSIC
coiled coil region	503	543	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000110634
AA Change: R492*

SMART Domains

Protein: ENSMUSP00000106264
Gene: ENSMUSG00000021156
AA Change: R492*

Domain	Start	End	E-Value	Type
PHD	102	146	4.19e-7	SMART
RING	106	145	8.31e-1	SMART
BROMO	151	257	1.03e-18	SMART
PWWP	278	329	1.96e-21	SMART
low complexity region	372	385	N/A	INTRINSIC
low complexity region	405	416	N/A	INTRINSIC
coiled coil region	487	527	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000110635
AA Change: R461*

SMART Domains

Protein: ENSMUSP00000106265
Gene: ENSMUSG00000021156
AA Change: R461*

Domain	Start	End	E-Value	Type
PHD	102	146	4.19e-7	SMART
RING	106	145	8.31e-1	SMART
BROMO	133	226	3.35e-4	SMART
PWWP	247	298	1.96e-21	SMART
low complexity region	341	354	N/A	INTRINSIC
low complexity region	374	385	N/A	INTRINSIC
coiled coil region	456	496	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000110636
AA Change: R492*

SMART Domains

Protein: ENSMUSP00000106266
Gene: ENSMUSG00000021156
AA Change: R492*

Domain	Start	End	E-Value	Type
PHD	102	146	4.19e-7	SMART
RING	106	145	8.31e-1	SMART
BROMO	151	257	1.03e-18	SMART
PWWP	278	329	1.96e-21	SMART
low complexity region	372	385	N/A	INTRINSIC
low complexity region	405	416	N/A	INTRINSIC
coiled coil region	487	527	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000110637
AA Change: R438*

SMART Domains

Protein: ENSMUSP00000106267
Gene: ENSMUSG00000021156
AA Change: R438*

Domain	Start	End	E-Value	Type
BROMO	97	203	1.03e-18	SMART
PWWP	224	275	1.96e-21	SMART
low complexity region	318	331	N/A	INTRINSIC
low complexity region	351	362	N/A	INTRINSIC
coiled coil region	433	473	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000110638
AA Change: R494*

SMART Domains

Protein: ENSMUSP00000106268
Gene: ENSMUSG00000021156
AA Change: R494*

Domain	Start	End	E-Value	Type
BROMO	97	203	1.03e-18	SMART
PWWP	224	275	1.96e-21	SMART
low complexity region	318	331	N/A	INTRINSIC
low complexity region	404	423	N/A	INTRINSIC
coiled coil region	489	529	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138039

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137813

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137932

Predicted Effect

probably null
Transcript: ENSMUST00000222475
AA Change: R407*

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000222038

Predicted Effect

probably null
Transcript: ENSMUST00000130151

SMART Domains

Protein: ENSMUSP00000118964
Gene: ENSMUSG00000021156

Domain	Start	End	E-Value	Type
PHD	117	161	4.19e-7	SMART
RING	121	160	8.31e-1	SMART
BROMO	166	272	1.03e-18	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000223421

Predicted Effect

probably benign
Transcript: ENSMUST00000220996

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000222215

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000222421

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000221492

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000222446

Predicted Effect

probably benign
Transcript: ENSMUST00000157035

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.2%
20x: 91.6%

Validation Efficiency

97% (72/74)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene was first identified by its ability to bind the adenovirus E1A protein. The protein localizes to the nucleus. It functions as a transcriptional repressor, and expression of E1A inhibits this repression. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930548G14Rik	T	C	15: 46,489,002 (GRCm39)		noncoding transcript	Het
Abcb4	T	A	5: 8,955,989 (GRCm39)	S98T	probably benign	Het
Acan	T	C	7: 78,750,541 (GRCm39)	S1771P	probably damaging	Het
Acvr1c	T	A	2: 58,205,987 (GRCm39)	Q41L	probably benign	Het
Ak2	T	A	4: 128,902,022 (GRCm39)	S232T	probably benign	Het
Akr1e1	T	A	13: 4,657,564 (GRCm39)		probably benign	Het
Ano7	T	C	1: 93,328,303 (GRCm39)		probably benign	Het
Aox1	T	A	1: 58,086,300 (GRCm39)	H68Q	possibly damaging	Het
Apaf1	A	G	10: 90,897,676 (GRCm39)	V269A	possibly damaging	Het
Apba2	A	T	7: 64,383,290 (GRCm39)	I368F	probably damaging	Het
Armc3	A	G	2: 19,293,747 (GRCm39)	M513V	probably benign	Het
Asb5	G	A	8: 55,036,655 (GRCm39)	V116M	probably damaging	Het
Atg16l2	A	G	7: 100,944,127 (GRCm39)	S280P	possibly damaging	Het
Atp6v0c	G	T	17: 24,383,835 (GRCm39)	T40K	probably damaging	Het
Cdk2ap2	A	G	19: 4,147,903 (GRCm39)	M57V	possibly damaging	Het
Cip2a	T	C	16: 48,826,214 (GRCm39)		probably benign	Het
Ctnnd1	T	C	2: 84,450,704 (GRCm39)	N172S	probably benign	Het
Ddx55	T	A	5: 124,704,503 (GRCm39)	V370E	probably damaging	Het
Ddx6	A	G	9: 44,518,831 (GRCm39)	T48A	probably benign	Het
Dnah10	C	T	5: 124,911,052 (GRCm39)	R4490W	probably damaging	Het
Dspp	T	A	5: 104,326,425 (GRCm39)	S929R	unknown	Het
Erbb3	T	C	10: 128,422,094 (GRCm39)	Y50C	probably benign	Het
Fam209	C	A	2: 172,314,689 (GRCm39)	N59K	probably benign	Het
Fgd3	T	C	13: 49,449,931 (GRCm39)	E106G	probably benign	Het
Frmd4a	A	C	2: 4,577,176 (GRCm39)	K344T	probably damaging	Het
Gbe1	A	G	16: 70,325,814 (GRCm39)	E617G	probably damaging	Het
Gm5089	T	A	14: 122,673,686 (GRCm39)	I12F	unknown	Het
Gm7052	T	A	17: 22,258,920 (GRCm39)		probably benign	Het
Gria1	A	T	11: 56,902,930 (GRCm39)	N24I	possibly damaging	Het
Grin2b	T	C	6: 135,710,243 (GRCm39)	E1101G	probably damaging	Het
Hjurp	GT	GTT	1: 88,194,246 (GRCm39)		probably null	Het
Kcnma1	A	C	14: 23,387,097 (GRCm39)	S982A	probably damaging	Het
Khdrbs3	T	A	15: 68,885,328 (GRCm39)		probably benign	Het
Kif23	A	T	9: 61,834,666 (GRCm39)	C426*	probably null	Het
Lmo7	G	T	14: 102,124,497 (GRCm39)	A319S	probably benign	Het
Ly6c1	T	A	15: 74,920,342 (GRCm39)	T7S	possibly damaging	Het
Magel2	G	A	7: 62,028,844 (GRCm39)	V583I	unknown	Het
Mamdc4	A	T	2: 25,457,244 (GRCm39)	W548R	probably damaging	Het
Mfsd2a	C	T	4: 122,850,609 (GRCm39)	R88Q	probably damaging	Het
Mkrn1	T	C	6: 39,382,737 (GRCm39)	T158A	probably benign	Het
Mroh2b	G	T	15: 4,955,166 (GRCm39)	D720Y	probably damaging	Het
Mycbp2	A	G	14: 103,485,839 (GRCm39)	V1041A	probably damaging	Het
Ncam2	A	T	16: 81,386,586 (GRCm39)	H655L	possibly damaging	Het
Npas2	T	C	1: 39,377,276 (GRCm39)	V546A	probably benign	Het
Nrxn3	G	A	12: 90,299,089 (GRCm39)	A400T	probably damaging	Het
Oog3	G	T	4: 143,884,675 (GRCm39)	H420Q	possibly damaging	Het
Or3a10	A	T	11: 73,935,865 (GRCm39)	S78R	possibly damaging	Het
Or5ap2	T	A	2: 85,680,744 (GRCm39)	V316E	probably benign	Het
Or8k28	T	C	2: 86,285,817 (GRCm39)	H266R	probably benign	Het
Pak5	T	A	2: 135,958,557 (GRCm39)	H177L	probably benign	Het
Pcca	A	G	14: 123,124,477 (GRCm39)	I683V	probably benign	Het
Pea15a	T	C	1: 172,026,252 (GRCm39)	I90V	probably benign	Het
Plagl1	C	A	10: 13,004,402 (GRCm39)		probably benign	Het
Prmt1	A	G	7: 44,628,148 (GRCm39)	V237A	probably damaging	Het
Ptprz1	T	A	6: 23,027,833 (GRCm39)	Y910*	probably null	Het
Rasal3	T	A	17: 32,612,585 (GRCm39)	T757S	probably damaging	Het
Rbbp8	T	C	18: 11,860,223 (GRCm39)		probably benign	Het
S1pr1	A	G	3: 115,506,544 (GRCm39)	S17P	probably benign	Het
Scel	G	A	14: 103,779,421 (GRCm39)	V131M	probably damaging	Het
Scn2a	G	A	2: 65,512,427 (GRCm39)	R188Q	probably null	Het
Snap29	T	A	16: 17,224,190 (GRCm39)	Y68*	probably null	Het
Spdl1	T	C	11: 34,713,473 (GRCm39)	T199A	probably benign	Het
Srbd1	T	C	17: 86,449,828 (GRCm39)	N14D	probably benign	Het
Ston1	G	A	17: 88,942,957 (GRCm39)	G121D	probably benign	Het
Syt16	G	A	12: 74,281,977 (GRCm39)	G367E	possibly damaging	Het
Tdpoz1	T	C	3: 93,578,710 (GRCm39)	T25A	possibly damaging	Het
Tmem182	T	A	1: 40,845,355 (GRCm39)	Y77N	probably damaging	Het
Tmprss11f	A	T	5: 86,687,627 (GRCm39)		probably benign	Het
Trp73	T	C	4: 154,165,902 (GRCm39)	T56A	probably damaging	Het
Trpm3	A	G	19: 22,959,947 (GRCm39)	K1194R	probably damaging	Het
Ttc39c	T	A	18: 12,830,935 (GRCm39)		probably null	Het
Ube4b	T	C	4: 149,468,254 (GRCm39)	D174G	probably benign	Het
Vmn1r211	A	T	13: 23,035,953 (GRCm39)	M238K	probably damaging	Het
Wsb2	T	A	5: 117,508,798 (GRCm39)	N77K	probably benign	Het
Xkr4	C	T	1: 3,741,318 (GRCm39)	R85Q	probably benign	Het

Other mutations in Zmynd11

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00573:Zmynd11	APN	13	9,739,262 (GRCm39)	missense	probably damaging	0.97
IGL00846:Zmynd11	APN	13	9,770,808 (GRCm39)	critical splice donor site	probably null
IGL01606:Zmynd11	APN	13	9,747,724 (GRCm39)	missense	probably damaging	1.00
IGL03229:Zmynd11	APN	13	9,739,601 (GRCm39)	missense	probably damaging	1.00
R1173:Zmynd11	UTSW	13	9,739,585 (GRCm39)	missense	probably damaging	1.00
R1413:Zmynd11	UTSW	13	9,760,256 (GRCm39)	missense	probably damaging	1.00
R1813:Zmynd11	UTSW	13	9,739,616 (GRCm39)	missense	possibly damaging	0.53
R1872:Zmynd11	UTSW	13	9,748,737 (GRCm39)	missense	possibly damaging	0.88
R2991:Zmynd11	UTSW	13	9,745,858 (GRCm39)	missense	probably damaging	0.99
R4273:Zmynd11	UTSW	13	9,747,726 (GRCm39)	missense	probably damaging	1.00
R4708:Zmynd11	UTSW	13	9,745,789 (GRCm39)	missense	probably damaging	0.97
R4718:Zmynd11	UTSW	13	9,739,603 (GRCm39)	missense	possibly damaging	0.86
R5011:Zmynd11	UTSW	13	9,739,479 (GRCm39)	unclassified	probably benign
R5151:Zmynd11	UTSW	13	9,740,953 (GRCm39)	missense	probably damaging	1.00
R5963:Zmynd11	UTSW	13	9,745,931 (GRCm39)	intron	probably benign
R6648:Zmynd11	UTSW	13	9,763,057 (GRCm39)	missense	probably benign	0.11
R7002:Zmynd11	UTSW	13	9,744,366 (GRCm39)	missense	probably damaging	1.00
R7223:Zmynd11	UTSW	13	9,760,198 (GRCm39)	missense	probably benign	0.09
R7322:Zmynd11	UTSW	13	9,740,445 (GRCm39)	missense	possibly damaging	0.53
R7462:Zmynd11	UTSW	13	9,748,720 (GRCm39)	missense	probably benign	0.29
R7500:Zmynd11	UTSW	13	9,785,434 (GRCm39)	missense	probably benign	0.00
R7737:Zmynd11	UTSW	13	9,745,175 (GRCm39)	missense	probably damaging	1.00
R8181:Zmynd11	UTSW	13	9,739,687 (GRCm39)	missense	probably benign	0.08
R8331:Zmynd11	UTSW	13	9,745,190 (GRCm39)	missense	probably benign	0.21
R8853:Zmynd11	UTSW	13	9,740,965 (GRCm39)	missense	probably damaging	0.99
R9115:Zmynd11	UTSW	13	9,743,495 (GRCm39)	missense	probably damaging	1.00
R9184:Zmynd11	UTSW	13	9,743,475 (GRCm39)	missense	probably benign	0.01
R9747:Zmynd11	UTSW	13	9,739,244 (GRCm39)	missense	probably benign	0.10

Predicted Primers

PCR Primer
(F):5'- GACAGCGACAGATCAGATCC -3'
(R):5'- TTGAGAGGGTGTCAGTGTCAAC -3'

Sequencing Primer
(F):5'- ATAGACAAGGCCTCACTGCTGG -3'
(R):5'- GTGTCAGTGTCAACCCAGAC -3'

Posted On

2014-08-25