Mutagenetix > Incidental Mutation

Incidental Mutation 'R2005:Or10ag56'

225320

Institutional Source

Beutler Lab

Gene Symbol

Or10ag56

Ensembl Gene

ENSMUSG00000083706

Gene Name

olfactory receptor family 10 subfamily AG member 56

Synonyms

Olfr1118, GA_x6K02T2Q125-48795705-48796673, Olfr1118-ps, MOR264-22

MMRRC Submission

040014-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.102) question?

Stock #

R2005 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

87139108-87140103 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 87139792 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 240 (S240T)

Ref Sequence

ENSEMBL: ENSMUSP00000150394 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000090717] [ENSMUST00000121296] [ENSMUST00000216396]

AlphaFold

A0A1L1STN9

Predicted Effect

probably benign
Transcript: ENSMUST00000090717
AA Change: S220T

PolyPhen 2 Score 0.122 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000132837
Gene: ENSMUSG00000070855
AA Change: S220T

Domain	Start	End	E-Value	Type
Pfam:7tm_4	22	298	1.1e-53	PFAM
Pfam:7tm_1	32	281	1.1e-20	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000120328

Predicted Effect

probably benign
Transcript: ENSMUST00000121296
AA Change: S220T

PolyPhen 2 Score 0.243 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000144143
Gene: ENSMUSG00000083706
AA Change: S220T

Domain	Start	End	E-Value	Type
Pfam:7tm_4	22	298	1.2e-51	PFAM
Pfam:7tm_1	32	281	7.2e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000216396
AA Change: S240T

PolyPhen 2 Score 0.244 (Sensitivity: 0.91; Specificity: 0.88)

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.0%

Validation Efficiency

MGI Phenotype

FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb5	G	A	12: 118,841,562 (GRCm39)	A961V	probably benign	Het
Adcy10	A	G	1: 165,352,591 (GRCm39)	Y475C	probably benign	Het
Adgrb3	T	C	1: 25,150,799 (GRCm39)	M1145V	probably benign	Het
Akr1c21	A	G	13: 4,624,214 (GRCm39)	T23A	probably damaging	Het
Ankrd33b	A	T	15: 31,297,814 (GRCm39)	S314R	probably damaging	Het
Apc	T	C	18: 34,443,962 (GRCm39)		probably null	Het
Atg9a	T	A	1: 75,162,635 (GRCm39)	Q460L	probably benign	Het
Birc2	C	T	9: 7,860,342 (GRCm39)	C292Y	probably damaging	Het
Capn5	T	C	7: 97,778,570 (GRCm39)	I350V	probably benign	Het
Cc2d2a	G	A	5: 43,883,715 (GRCm39)		probably null	Het
Cdh22	T	A	2: 165,022,843 (GRCm39)	E76V	probably damaging	Het
Cdh8	T	C	8: 99,760,103 (GRCm39)		probably null	Het
Cdkn1b	ATTCTTCTTC	ATTCTTCTTCTTC	6: 134,898,919 (GRCm39)		probably benign	Het
Cfap54	T	A	10: 92,720,630 (GRCm39)	D2608V	unknown	Het
Crebrf	T	C	17: 26,961,857 (GRCm39)	V318A	possibly damaging	Het
Cwf19l2	A	T	9: 3,430,720 (GRCm39)	N351Y	possibly damaging	Het
Cyp2c67	A	T	19: 39,631,789 (GRCm39)	M136K	probably damaging	Het
Ddx10	A	G	9: 53,151,775 (GRCm39)		probably null	Het
Ddx47	A	G	6: 134,995,084 (GRCm39)	N92S	probably benign	Het
Ddx50	T	A	10: 62,476,243 (GRCm39)	H306L	probably benign	Het
Dnajc27	A	G	12: 4,147,317 (GRCm39)	T167A	possibly damaging	Het
Dscam	T	G	16: 96,840,120 (GRCm39)	K162N	probably benign	Het
Eif4h	G	A	5: 134,656,531 (GRCm39)	T53I	probably benign	Het
Elmo2	T	C	2: 165,140,199 (GRCm39)	N332S	probably benign	Het
Ergic3	A	G	2: 155,853,028 (GRCm39)	N157S	possibly damaging	Het
F2rl1	G	T	13: 95,649,782 (GRCm39)	R367S	probably damaging	Het
Fbxo36	G	A	1: 84,877,790 (GRCm39)	A151T	probably benign	Het
Foxf2	G	T	13: 31,810,124 (GRCm39)	R21L	unknown	Het
Gmip	T	A	8: 70,266,693 (GRCm39)	H269Q	probably benign	Het
Gng4	T	A	13: 13,980,751 (GRCm39)	V32E	probably benign	Het
Grm3	T	C	5: 9,639,793 (GRCm39)	Y84C	possibly damaging	Het
Helz2	C	T	2: 180,873,122 (GRCm39)	R2396H	probably benign	Het
Icosl	A	T	10: 77,907,787 (GRCm39)	M116L	possibly damaging	Het
Itgb3bp	A	C	4: 99,702,295 (GRCm39)	N16K	probably benign	Het
Kcnt2	A	G	1: 140,480,756 (GRCm39)	M824V	probably damaging	Het
Mki67	T	A	7: 135,300,238 (GRCm39)	K1599*	probably null	Het
Mmp25	G	A	17: 23,859,216 (GRCm39)	R144W	probably damaging	Het
Mmrn1	A	T	6: 60,953,068 (GRCm39)	I450F	possibly damaging	Het
Mroh2b	A	T	15: 4,946,640 (GRCm39)	K480M	probably damaging	Het
Nbn	T	A	4: 15,979,351 (GRCm39)	D445E	probably benign	Het
Npbwr1	T	A	1: 5,986,570 (GRCm39)	S315C	probably damaging	Het
Or1e19	A	T	11: 73,316,065 (GRCm39)	V248E	probably damaging	Het
Or5d38	A	G	2: 87,954,891 (GRCm39)	L146P	probably damaging	Het
Or7g16	G	A	9: 18,726,801 (GRCm39)	S263L	probably benign	Het
Pard3b	A	T	1: 62,184,050 (GRCm39)	E183D	probably benign	Het
Pde10a	G	A	17: 9,147,923 (GRCm39)		probably null	Het
Pdlim2	C	T	14: 70,402,228 (GRCm39)	R296H	probably damaging	Het
Prdm13	T	C	4: 21,685,695 (GRCm39)		probably benign	Het
Rc3h2	T	A	2: 37,279,765 (GRCm39)	K461*	probably null	Het
Reep2	C	T	18: 34,978,674 (GRCm39)	T117M	probably damaging	Het
Rhbdd1	A	G	1: 82,318,531 (GRCm39)	N138S	probably benign	Het
Rnf19a	A	T	15: 36,241,916 (GRCm39)	F708I	possibly damaging	Het
Robo2	G	A	16: 73,730,003 (GRCm39)	H1069Y	possibly damaging	Het
Rpl9	C	T	5: 65,546,878 (GRCm39)	V112I	probably benign	Het
Sec16a	A	C	2: 26,329,092 (GRCm39)	S974R	probably benign	Het
Sfrp5	A	G	19: 42,187,275 (GRCm39)	M265T	probably benign	Het
Skint7	T	C	4: 111,842,047 (GRCm39)	I305T	probably benign	Het
Slc6a7	T	C	18: 61,134,713 (GRCm39)	D454G	possibly damaging	Het
Slco6c1	A	G	1: 97,009,214 (GRCm39)	I407T	probably damaging	Het
Slfn8	A	T	11: 82,894,976 (GRCm39)	M610K	probably damaging	Het
Spidr	A	G	16: 15,865,913 (GRCm39)	S299P	probably damaging	Het
Sptbn4	C	T	7: 27,065,844 (GRCm39)	W2034*	probably null	Het
Stard9	T	A	2: 120,495,426 (GRCm39)	F100L	possibly damaging	Het
Stard9	C	A	2: 120,504,117 (GRCm39)	S221R	probably damaging	Het
Stc1	T	C	14: 69,269,096 (GRCm39)		probably null	Het
Sun2	T	C	15: 79,610,825 (GRCm39)	E667G	possibly damaging	Het
Tacc2	T	C	7: 130,333,280 (GRCm39)	S511P	probably damaging	Het
Tasp1	T	G	2: 139,819,598 (GRCm39)	K202Q	probably damaging	Het
Tdrd6	A	G	17: 43,939,546 (GRCm39)	F501L	probably damaging	Het
Tgds	A	G	14: 118,368,068 (GRCm39)	V35A	possibly damaging	Het
Tubgcp6	G	A	15: 88,988,369 (GRCm39)	T860I	probably benign	Het
Twf1	C	T	15: 94,483,328 (GRCm39)		probably null	Het
Vangl1	A	G	3: 102,070,782 (GRCm39)	S385P	probably benign	Het
Vmn2r117	A	G	17: 23,696,618 (GRCm39)	I263T	probably damaging	Het
Washc5	A	G	15: 59,213,004 (GRCm39)	L892P	possibly damaging	Het
Wnk4	T	C	11: 101,154,716 (GRCm39)	C302R	probably damaging	Het
Zfp395	A	G	14: 65,626,334 (GRCm39)	E191G	possibly damaging	Het
Zkscan17	A	G	11: 59,383,042 (GRCm39)	L302P	probably damaging	Het

Other mutations in Or10ag56

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01328:Or10ag56	APN	2	87,139,925 (GRCm39)	missense	possibly damaging	0.95
IGL01458:Or10ag56	APN	2	87,139,826 (GRCm39)	missense	probably damaging	1.00
IGL02544:Or10ag56	APN	2	87,139,471 (GRCm39)	missense	possibly damaging	0.91
IGL02748:Or10ag56	APN	2	87,140,009 (GRCm39)	missense	probably damaging	1.00
IGL03077:Or10ag56	APN	2	87,140,056 (GRCm39)	makesense	probably null
R0411:Or10ag56	UTSW	2	87,139,402 (GRCm39)	missense	probably benign	0.07
R0525:Or10ag56	UTSW	2	87,139,693 (GRCm39)	missense	probably benign	0.10
R1703:Or10ag56	UTSW	2	87,139,754 (GRCm39)	missense	probably benign	0.00
R1750:Or10ag56	UTSW	2	87,139,196 (GRCm39)	missense	probably benign	0.02
R2090:Or10ag56	UTSW	2	87,139,762 (GRCm39)	missense	probably benign	0.02
R3846:Or10ag56	UTSW	2	87,139,526 (GRCm39)	missense	probably benign	0.15
R4011:Or10ag56	UTSW	2	87,139,555 (GRCm39)	missense	probably benign	0.03
R4077:Or10ag56	UTSW	2	87,139,208 (GRCm39)	splice site	probably null	0.42
R5132:Or10ag56	UTSW	2	87,139,282 (GRCm39)	missense	probably damaging	1.00
R5368:Or10ag56	UTSW	2	87,139,126 (GRCm39)	splice site	probably null
R7355:Or10ag56	UTSW	2	87,139,754 (GRCm39)	missense	probably benign	0.00
R7405:Or10ag56	UTSW	2	87,139,339 (GRCm39)	missense	probably benign	0.00
R7437:Or10ag56	UTSW	2	87,139,687 (GRCm39)	missense	probably benign
R7554:Or10ag56	UTSW	2	87,139,349 (GRCm39)	missense	probably damaging	1.00
R7609:Or10ag56	UTSW	2	87,139,853 (GRCm39)	missense	probably benign	0.01
R8156:Or10ag56	UTSW	2	87,139,318 (GRCm39)	missense	probably damaging	0.97
R8482:Or10ag56	UTSW	2	87,139,726 (GRCm39)	missense	probably benign	0.07
R8558:Or10ag56	UTSW	2	87,139,583 (GRCm39)	missense	probably benign	0.11
R9136:Or10ag56	UTSW	2	87,139,219 (GRCm39)	missense	possibly damaging	0.95
R9229:Or10ag56	UTSW	2	87,139,165 (GRCm39)	missense	probably benign	0.00
R9326:Or10ag56	UTSW	2	87,139,730 (GRCm39)	missense	probably benign	0.37
RF010:Or10ag56	UTSW	2	87,139,184 (GRCm39)	missense	possibly damaging	0.83

Predicted Primers

PCR Primer
(F):5'- TTCCTGTACAAATTGGGCAGACC -3'
(R):5'- ATTCAAAGCTGGGATCAAAATGGTG -3'

Sequencing Primer
(F):5'- TTGGGCAGACCTACCAGATATTC -3'
(R):5'- TGTAGAAAAGAGATAGCAGCTTCCCC -3'

Posted On

2014-08-25