Incidental Mutation 'R2070:Eml1'
ID 227074
Institutional Source Beutler Lab
Gene Symbol Eml1
Ensembl Gene ENSMUSG00000058070
Gene Name echinoderm microtubule associated protein like 1
Synonyms 1110008N23Rik, heco, A930030P13Rik, ELP79
MMRRC Submission 040075-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.160) question?
Stock # R2070 (G1)
Quality Score 225
Status Not validated
Chromosome 12
Chromosomal Location 108337265-108505835 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 108479258 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Leucine at position 344 (V344L)
Ref Sequence ENSEMBL: ENSMUSP00000118325 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000054955] [ENSMUST00000109857] [ENSMUST00000109860] [ENSMUST00000130999]
AlphaFold Q05BC3
Predicted Effect probably damaging
Transcript: ENSMUST00000054955
AA Change: V313L

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000057209
Gene: ENSMUSG00000058070
AA Change: V313L

DomainStartEndE-ValueType
coiled coil region 1 41 N/A INTRINSIC
low complexity region 72 84 N/A INTRINSIC
low complexity region 119 146 N/A INTRINSIC
WD40 228 277 5.6e-3 SMART
WD40 280 325 2.21e1 SMART
WD40 328 367 4.46e-1 SMART
WD40 375 413 5.73e0 SMART
WD40 416 456 5.75e-1 SMART
WD40 496 539 4.24e-3 SMART
WD40 542 580 1.37e2 SMART
WD40 583 622 1.7e-2 SMART
WD40 629 668 1.58e-2 SMART
Blast:WD40 694 735 7e-20 BLAST
WD40 741 781 2.96e-2 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000109857
AA Change: V330L

PolyPhen 2 Score 0.977 (Sensitivity: 0.76; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000105483
Gene: ENSMUSG00000058070
AA Change: V330L

DomainStartEndE-ValueType
coiled coil region 1 41 N/A INTRINSIC
low complexity region 72 84 N/A INTRINSIC
low complexity region 119 146 N/A INTRINSIC
WD40 245 294 5.6e-3 SMART
WD40 297 342 2.21e1 SMART
WD40 345 384 4.46e-1 SMART
WD40 392 430 5.73e0 SMART
WD40 433 473 5.75e-1 SMART
WD40 513 556 4.24e-3 SMART
WD40 559 597 1.37e2 SMART
WD40 600 639 1.7e-2 SMART
WD40 646 685 1.58e-2 SMART
Blast:WD40 711 752 7e-20 BLAST
WD40 758 798 2.96e-2 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000109860
AA Change: V344L

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000105486
Gene: ENSMUSG00000058070
AA Change: V344L

DomainStartEndE-ValueType
low complexity region 6 18 N/A INTRINSIC
coiled coil region 31 72 N/A INTRINSIC
low complexity region 103 115 N/A INTRINSIC
low complexity region 150 177 N/A INTRINSIC
Pfam:HELP 184 258 1.8e-35 PFAM
WD40 259 308 5.6e-3 SMART
WD40 311 356 2.21e1 SMART
WD40 359 398 4.46e-1 SMART
WD40 406 444 5.73e0 SMART
WD40 447 487 5.75e-1 SMART
WD40 527 570 4.24e-3 SMART
WD40 573 611 1.37e2 SMART
WD40 614 653 1.7e-2 SMART
WD40 660 699 1.58e-2 SMART
Blast:WD40 725 766 7e-20 BLAST
WD40 772 812 2.96e-2 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000130999
AA Change: V344L

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000118325
Gene: ENSMUSG00000058070
AA Change: V344L

DomainStartEndE-ValueType
low complexity region 6 18 N/A INTRINSIC
coiled coil region 31 72 N/A INTRINSIC
low complexity region 103 115 N/A INTRINSIC
low complexity region 150 177 N/A INTRINSIC
WD40 259 308 5.6e-3 SMART
WD40 311 356 2.21e1 SMART
WD40 359 398 4.46e-1 SMART
WD40 406 444 5.73e0 SMART
WD40 447 487 5.75e-1 SMART
WD40 527 570 4.24e-3 SMART
WD40 573 611 1.37e2 SMART
WD40 614 653 1.7e-2 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000138456
Predicted Effect noncoding transcript
Transcript: ENSMUST00000155544
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.4%
  • 20x: 95.5%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Human echinoderm microtubule-associated protein-like is a strong candidate for the Usher syndrome type 1A gene. Usher syndromes (USHs) are a group of genetic disorders consisting of congenital deafness, retinitis pigmentosa, and vestibular dysfunction of variable onset and severity depending on the genetic type. The disease process in USHs involves the entire brain and is not limited to the posterior fossa or auditory and visual systems. The USHs are catagorized as type I (USH1A, USH1B, USH1C, USH1D, USH1E and USH1F), type II (USH2A and USH2B) and type III (USH3). The type I is the most severe form. Gene loci responsible for these three types are all mapped. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a spontaneous mutation exhibit subcortical band heterotopia associated with seizures, developmental delay and behavioral deficits. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 83 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2810021J22Rik A G 11: 58,767,595 (GRCm39) K31E probably damaging Het
Abcc10 G C 17: 46,614,491 (GRCm39) N1477K probably benign Het
Ablim2 G A 5: 35,955,857 (GRCm39) C24Y probably damaging Het
Ankle1 T C 8: 71,861,988 (GRCm39) F497S probably damaging Het
Armh3 G T 19: 45,879,724 (GRCm39) P543Q probably damaging Het
Ash1l C G 3: 88,873,510 (GRCm39) P98A probably damaging Het
Atad5 A T 11: 79,988,878 (GRCm39) probably null Het
B3gnt4 A T 5: 123,649,433 (GRCm39) H266L probably benign Het
Bmi1 A G 2: 18,688,851 (GRCm39) I207V probably benign Het
Bnip3l A G 14: 67,226,671 (GRCm39) M174T probably damaging Het
Bora T C 14: 99,299,714 (GRCm39) S229P probably damaging Het
Ccdc121 T C 5: 31,644,727 (GRCm39) V160A possibly damaging Het
Ccdc27 T A 4: 154,126,270 (GRCm39) N73I unknown Het
Cdc42bpg T A 19: 6,370,518 (GRCm39) C1204S probably damaging Het
Cdsn A T 17: 35,865,591 (GRCm39) D40V probably damaging Het
Cilp T A 9: 65,186,377 (GRCm39) V824D probably damaging Het
Cmtr1 A G 17: 29,913,757 (GRCm39) probably null Het
Cntnap1 A G 11: 101,073,805 (GRCm39) Y652C probably damaging Het
Col12a1 T C 9: 79,554,978 (GRCm39) I2033M probably benign Het
Cwh43 T C 5: 73,578,860 (GRCm39) L289P probably damaging Het
Ddhd1 T C 14: 45,848,081 (GRCm39) D529G probably damaging Het
Defb28 T A 2: 152,362,064 (GRCm39) S75T probably benign Het
Dennd2a A T 6: 39,442,053 (GRCm39) V939D probably damaging Het
Dlg5 T C 14: 24,186,703 (GRCm39) R1866G probably damaging Het
Dsc1 C T 18: 20,221,353 (GRCm39) probably null Het
Ecscr T G 18: 35,848,490 (GRCm39) N184T probably damaging Het
Eif4ebp1 G T 8: 27,763,372 (GRCm39) R55L probably damaging Het
Exoc2 G T 13: 30,999,353 (GRCm39) N901K probably benign Het
Fam161b T A 12: 84,403,202 (GRCm39) I143F probably benign Het
Fam180a A G 6: 35,302,846 (GRCm39) S2P probably benign Het
Fat3 T A 9: 15,910,666 (GRCm39) I1779F probably benign Het
Fat4 A G 3: 39,064,804 (GRCm39) K4920R probably benign Het
Fsip2 T A 2: 82,806,699 (GRCm39) V1006E probably damaging Het
Glcci1 A G 6: 8,558,566 (GRCm39) S30G probably damaging Het
Gm5414 A T 15: 101,536,495 (GRCm39) S43R possibly damaging Het
Hao1 T C 2: 134,372,535 (GRCm39) T158A probably damaging Het
Hic1 T C 11: 75,059,885 (GRCm39) H154R possibly damaging Het
Hmgxb3 T C 18: 61,304,431 (GRCm39) Y53C probably damaging Het
Ipmk A T 10: 71,208,579 (GRCm39) K122* probably null Het
Jakmip2 T C 18: 43,696,395 (GRCm39) E518G probably benign Het
Kmt2e A G 5: 23,706,993 (GRCm39) T1519A probably benign Het
Lfng T C 5: 140,598,350 (GRCm39) I224T possibly damaging Het
Magel2 G A 7: 62,028,844 (GRCm39) V583I unknown Het
Map4k5 C T 12: 69,863,111 (GRCm39) V629I probably damaging Het
Med12l A G 3: 59,152,326 (GRCm39) D1037G probably damaging Het
Morc1 C T 16: 48,412,974 (GRCm39) T705I probably benign Het
Mptx2 A T 1: 173,102,145 (GRCm39) Y181* probably null Het
Mrpl24 T C 3: 87,830,374 (GRCm39) probably null Het
Myo5a A G 9: 75,089,266 (GRCm39) E1132G probably benign Het
Nedd4l T G 18: 65,345,891 (GRCm39) F814L probably damaging Het
Nmral1 T A 16: 4,534,211 (GRCm39) I77F probably damaging Het
Oit3 T G 10: 59,266,835 (GRCm39) I224L probably benign Het
Oxsm A G 14: 16,241,983 (GRCm38) L262P probably benign Het
Pacs2 C T 12: 113,024,731 (GRCm39) T407I probably damaging Het
Pard6g T C 18: 80,160,940 (GRCm39) I351T probably benign Het
Pdcl2 A T 5: 76,472,838 (GRCm39) probably null Het
Pdzph1 T C 17: 59,281,092 (GRCm39) R397G probably benign Het
Phip T A 9: 82,757,352 (GRCm39) I1607L probably benign Het
Plekhd1 C A 12: 80,739,681 (GRCm39) S10* probably null Het
Pramel24 T G 4: 143,453,472 (GRCm39) Y193* probably null Het
Prdm1 C T 10: 44,317,408 (GRCm39) D505N possibly damaging Het
Psmd13 T C 7: 140,477,561 (GRCm39) V320A probably damaging Het
Rbak A G 5: 143,162,339 (GRCm39) L8P probably damaging Het
Rere C A 4: 150,699,047 (GRCm39) probably benign Het
Rint1 T C 5: 24,015,927 (GRCm39) S456P possibly damaging Het
Scn3a T C 2: 65,351,210 (GRCm39) Q446R possibly damaging Het
Slitrk5 A G 14: 111,917,621 (GRCm39) Y415C probably damaging Het
Snrnp200 A G 2: 127,054,323 (GRCm39) E210G possibly damaging Het
Snrnp200 A G 2: 127,079,803 (GRCm39) T1891A probably benign Het
Sohlh2 A G 3: 55,115,043 (GRCm39) I343V probably benign Het
Spin1 T C 13: 51,298,573 (GRCm39) probably null Het
St14 T A 9: 31,002,669 (GRCm39) I745F probably damaging Het
Sv2a G A 3: 96,101,191 (GRCm39) A730T possibly damaging Het
Tars2 C A 3: 95,654,950 (GRCm39) G113C probably damaging Het
Tlcd3b T C 7: 126,419,012 (GRCm39) L4P probably benign Het
Trp53 A G 11: 69,480,458 (GRCm39) D278G probably damaging Het
Ubxn7 T A 16: 32,191,287 (GRCm39) C160S possibly damaging Het
Uty T C Y: 1,169,193 (GRCm39) E414G probably benign Het
Wrap73 T A 4: 154,233,200 (GRCm39) S125T possibly damaging Het
Wwc2 T C 8: 48,321,356 (GRCm39) D586G unknown Het
Zfp106 T C 2: 120,354,010 (GRCm39) H1490R probably benign Het
Zswim5 T C 4: 116,837,109 (GRCm39) V731A probably benign Het
Zyg11b G C 4: 108,108,016 (GRCm39) N463K possibly damaging Het
Other mutations in Eml1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00770:Eml1 APN 12 108,480,774 (GRCm39) splice site probably null
IGL00774:Eml1 APN 12 108,480,774 (GRCm39) splice site probably null
IGL01358:Eml1 APN 12 108,480,727 (GRCm39) missense probably benign 0.05
IGL02316:Eml1 APN 12 108,501,018 (GRCm39) intron probably benign
IGL02346:Eml1 APN 12 108,503,700 (GRCm39) missense possibly damaging 0.87
IGL02480:Eml1 APN 12 108,487,955 (GRCm39) missense probably benign 0.32
IGL02513:Eml1 APN 12 108,496,571 (GRCm39) missense probably damaging 1.00
IGL02556:Eml1 APN 12 108,503,625 (GRCm39) missense probably benign 0.00
IGL02565:Eml1 APN 12 108,472,779 (GRCm39) missense probably damaging 1.00
IGL03217:Eml1 APN 12 108,501,201 (GRCm39) missense probably benign 0.31
bubble UTSW 12 108,479,330 (GRCm39) critical splice donor site probably null
R0027:Eml1 UTSW 12 108,502,557 (GRCm39) missense possibly damaging 0.90
R0067:Eml1 UTSW 12 108,429,786 (GRCm39) missense possibly damaging 0.61
R0124:Eml1 UTSW 12 108,475,437 (GRCm39) missense probably damaging 1.00
R0124:Eml1 UTSW 12 108,472,867 (GRCm39) missense probably benign 0.00
R0730:Eml1 UTSW 12 108,496,585 (GRCm39) missense possibly damaging 0.79
R1566:Eml1 UTSW 12 108,438,151 (GRCm39) missense probably damaging 0.99
R1883:Eml1 UTSW 12 108,429,911 (GRCm39) missense probably damaging 0.97
R1927:Eml1 UTSW 12 108,504,476 (GRCm39) nonsense probably null
R1938:Eml1 UTSW 12 108,487,655 (GRCm39) missense possibly damaging 0.75
R2311:Eml1 UTSW 12 108,503,675 (GRCm39) missense probably damaging 0.99
R2417:Eml1 UTSW 12 108,502,534 (GRCm39) missense probably benign 0.00
R3120:Eml1 UTSW 12 108,479,312 (GRCm39) missense probably benign 0.31
R4352:Eml1 UTSW 12 108,501,096 (GRCm39) intron probably benign
R4471:Eml1 UTSW 12 108,472,894 (GRCm39) intron probably benign
R4655:Eml1 UTSW 12 108,500,972 (GRCm39) missense probably damaging 1.00
R5077:Eml1 UTSW 12 108,472,871 (GRCm39) splice site probably benign
R5094:Eml1 UTSW 12 108,502,570 (GRCm39) missense probably benign 0.11
R5113:Eml1 UTSW 12 108,503,596 (GRCm39) missense possibly damaging 0.74
R5524:Eml1 UTSW 12 108,487,635 (GRCm39) missense probably damaging 0.99
R5775:Eml1 UTSW 12 108,472,813 (GRCm39) missense probably damaging 1.00
R6120:Eml1 UTSW 12 108,493,983 (GRCm39) missense probably damaging 1.00
R6224:Eml1 UTSW 12 108,480,767 (GRCm39) missense probably damaging 1.00
R6491:Eml1 UTSW 12 108,479,330 (GRCm39) critical splice donor site probably null
R7035:Eml1 UTSW 12 108,475,493 (GRCm39) missense probably damaging 1.00
R7134:Eml1 UTSW 12 108,472,810 (GRCm39) missense probably benign 0.00
R7273:Eml1 UTSW 12 108,504,432 (GRCm39) missense possibly damaging 0.87
R7606:Eml1 UTSW 12 108,503,625 (GRCm39) missense probably benign 0.45
R7744:Eml1 UTSW 12 108,482,863 (GRCm39) missense probably benign
R7820:Eml1 UTSW 12 108,481,433 (GRCm39) missense possibly damaging 0.81
R8013:Eml1 UTSW 12 108,487,938 (GRCm39) missense probably benign 0.18
R8223:Eml1 UTSW 12 108,502,569 (GRCm39) missense probably benign 0.00
R8258:Eml1 UTSW 12 108,476,458 (GRCm39) missense probably damaging 0.97
R8259:Eml1 UTSW 12 108,476,458 (GRCm39) missense probably damaging 0.97
R8399:Eml1 UTSW 12 108,504,390 (GRCm39) missense possibly damaging 0.91
R8427:Eml1 UTSW 12 108,496,580 (GRCm39) missense probably damaging 0.99
R9002:Eml1 UTSW 12 108,504,438 (GRCm39) missense probably damaging 1.00
R9220:Eml1 UTSW 12 108,480,702 (GRCm39) nonsense probably null
R9432:Eml1 UTSW 12 108,482,842 (GRCm39) missense probably benign 0.00
R9446:Eml1 UTSW 12 108,481,465 (GRCm39) missense probably damaging 0.98
R9500:Eml1 UTSW 12 108,493,958 (GRCm39) missense probably damaging 1.00
Z1088:Eml1 UTSW 12 108,503,718 (GRCm39) missense possibly damaging 0.80
Z1177:Eml1 UTSW 12 108,500,915 (GRCm39) missense probably damaging 1.00
Z1177:Eml1 UTSW 12 108,389,398 (GRCm39) start gained probably benign
Predicted Primers PCR Primer
(F):5'- TATATGCAGGCAAACACCAATG -3'
(R):5'- TCTTAGGCAGGGTCTCATGG -3'

Sequencing Primer
(F):5'- TCTACAGAGCTAGTTCTAGGACAGC -3'
(R):5'- CTCATGGGGGTGGGGAC -3'
Posted On 2014-09-17