Mutagenetix > Incidental Mutation

Incidental Mutation 'R2056:Dhx38'

228197

Institutional Source

Beutler Lab

Gene Symbol

Dhx38

Ensembl Gene

ENSMUSG00000037993

Gene Name

DEAH-box helicase 38

Synonyms

Ddx38, 5730550P09Rik, Prp16

MMRRC Submission

040061-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.963) question?

Stock #

R2056 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

110274643-110292493 bp(-) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

G to T at 110289352 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000034159 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034159] [ENSMUST00000042601]

AlphaFold

Q80X98

Predicted Effect

probably benign
Transcript: ENSMUST00000034159

SMART Domains

Protein: ENSMUSP00000034159
Gene: ENSMUSG00000031723

Domain	Start	End	E-Value	Type
Pfam:DIM1	4	136	1.6e-58	PFAM
Pfam:Thioredoxin	6	109	3.4e-7	PFAM

Predicted Effect

unknown
Transcript: ENSMUST00000042601
AA Change: T16N

SMART Domains

Protein: ENSMUSP00000047865
Gene: ENSMUSG00000037993
AA Change: T16N

Domain	Start	End	E-Value	Type
Blast:DEXDc	3	146	2e-46	BLAST
low complexity region	147	204	N/A	INTRINSIC
Blast:DEXDc	205	444	1e-105	BLAST
low complexity region	511	525	N/A	INTRINSIC
DEXDc	531	715	6.88e-34	SMART
HELICc	759	862	1.11e-19	SMART
HA2	923	1013	3.22e-32	SMART
low complexity region	1163	1194	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene is a member of the DEAD/H box family of splicing factors. This protein resembles yeast Prp16 more closely than other DEAD/H family members. It is an ATPase and essential for the catalytic step II in pre-mRNA splicing process. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcg2	T	C	6: 58,667,525 (GRCm39)	V129A	probably benign	Het
Adh1	A	G	3: 137,992,676 (GRCm39)	D264G	probably damaging	Het
Ahnak2	T	A	12: 112,748,626 (GRCm39)	D407V	probably benign	Het
Alas1	T	C	9: 106,118,489 (GRCm39)	E211G	probably damaging	Het
Alkbh1	C	T	12: 87,490,520 (GRCm39)		probably benign	Het
Ankmy1	T	C	1: 92,809,553 (GRCm39)	I662V	possibly damaging	Het
Ano1	A	G	7: 144,201,789 (GRCm39)	V334A	probably damaging	Het
Apc	A	G	18: 34,449,481 (GRCm39)	R2092G	probably damaging	Het
Arhgap18	C	T	10: 26,730,904 (GRCm39)	T122I	probably benign	Het
Atp2b4	G	T	1: 133,654,275 (GRCm39)	Q777K	probably benign	Het
Brap	G	A	5: 121,801,529 (GRCm39)	G95S	probably damaging	Het
Cbfa2t2	G	A	2: 154,377,077 (GRCm39)	A587T	probably damaging	Het
Ccdc180	A	G	4: 45,932,477 (GRCm39)	I1308V	probably benign	Het
Ccser1	T	A	6: 61,399,936 (GRCm39)		probably null	Het
Cd84	A	G	1: 171,700,317 (GRCm39)	T145A	possibly damaging	Het
Cmtm4	A	C	8: 105,081,920 (GRCm39)	F156V	probably damaging	Het
Cntln	G	A	4: 84,967,911 (GRCm39)	R710K	probably benign	Het
Csn1s1	A	T	5: 87,819,387 (GRCm39)	T15S	possibly damaging	Het
Cul9	T	C	17: 46,854,298 (GRCm39)	T135A	probably benign	Het
Cyp2d10	T	A	15: 82,288,015 (GRCm39)	I363F	probably damaging	Het
Dis3	A	T	14: 99,336,251 (GRCm39)	I85N	possibly damaging	Het
Dmbt1	G	A	7: 130,707,900 (GRCm39)	A1381T	possibly damaging	Het
Dscaml1	A	G	9: 45,661,430 (GRCm39)	D1776G	probably damaging	Het
Erbin	A	G	13: 103,966,824 (GRCm39)	S1209P	probably benign	Het
Fat4	T	A	3: 38,945,319 (GRCm39)	M1404K	possibly damaging	Het
Fbxo45	G	T	16: 32,057,346 (GRCm39)	Q183K	possibly damaging	Het
Frmd4b	C	T	6: 97,389,448 (GRCm39)		probably null	Het
Fzd7	A	G	1: 59,523,361 (GRCm39)	S415G	probably benign	Het
Gpd2	T	A	2: 57,229,025 (GRCm39)		probably null	Het
Gsk3b	T	A	16: 38,008,271 (GRCm39)	D192E	probably benign	Het
Gstcd	T	C	3: 132,787,814 (GRCm39)	I295V	probably benign	Het
Gucy1a1	A	G	3: 82,016,592 (GRCm39)	L132P	possibly damaging	Het
Il12b	A	C	11: 44,298,727 (GRCm39)	T61P	probably damaging	Het
Il7	A	T	3: 7,638,975 (GRCm39)	N130K	probably damaging	Het
Itih3	A	C	14: 30,631,481 (GRCm39)		probably null	Het
Kdm5b	T	A	1: 134,540,952 (GRCm39)	D681E	probably benign	Het
Kif11	A	G	19: 37,390,660 (GRCm39)	N408D	probably benign	Het
Kng2	TATGACCATGACCATGACCATGACCATGACCATGACCAT	TATGACCATGACCATGACCATGACCATGACCAT	16: 22,806,703 (GRCm39)		probably benign	Het
Kremen2	T	C	17: 23,961,691 (GRCm39)	E272G	possibly damaging	Het
Krt9	G	T	11: 100,082,321 (GRCm39)	N201K	probably damaging	Het
Lmbr1	G	A	5: 29,438,092 (GRCm39)	P304L	probably benign	Het
Lrrfip1	A	G	1: 91,043,539 (GRCm39)	N648S	probably benign	Het
Mab21l3	C	A	3: 101,722,469 (GRCm39)	V386L	possibly damaging	Het
Mamdc4	T	C	2: 25,454,180 (GRCm39)	Q1149R	probably benign	Het
Mast1	A	G	8: 85,646,995 (GRCm39)	F677L	possibly damaging	Het
Mcoln3	A	G	3: 145,833,979 (GRCm39)	D173G	probably benign	Het
Mmrn1	C	T	6: 60,921,789 (GRCm39)	T82I	probably benign	Het
Mtcl2	C	T	2: 156,864,747 (GRCm39)	G1154S	probably benign	Het
Muc5ac	A	G	7: 141,345,772 (GRCm39)	T203A	probably benign	Het
Myo9b	T	C	8: 71,812,334 (GRCm39)	I2035T	possibly damaging	Het
Ndst3	T	C	3: 123,465,534 (GRCm39)	N146S	probably damaging	Het
Neu4	A	G	1: 93,950,172 (GRCm39)	T21A	possibly damaging	Het
Nos1ap	G	A	1: 170,155,215 (GRCm39)	L267F	probably damaging	Het
Or14c40	A	T	7: 86,313,591 (GRCm39)	K240N	probably damaging	Het
Or3a4	A	T	11: 73,944,819 (GRCm39)	Y255*	probably null	Het
Or4p8	A	G	2: 88,727,105 (GRCm39)	F279L	probably damaging	Het
Phc1	T	C	6: 122,310,299 (GRCm39)	N136S	probably damaging	Het
Prkdc	A	G	16: 15,545,469 (GRCm39)	T1862A	probably benign	Het
Psd2	A	G	18: 36,139,744 (GRCm39)	D596G	possibly damaging	Het
Psmc3	T	C	2: 90,888,433 (GRCm39)	F315L	probably benign	Het
Rerg	G	A	6: 137,034,878 (GRCm39)	T42I	probably benign	Het
Rif1	T	A	2: 51,983,588 (GRCm39)	M577K	probably damaging	Het
Sap30	T	C	8: 57,940,282 (GRCm39)		probably null	Het
Scn2b	T	C	9: 45,036,815 (GRCm39)	Y108H	probably damaging	Het
Senp2	C	T	16: 21,832,949 (GRCm39)	T79I	probably damaging	Het
Serpinb2	T	C	1: 107,451,543 (GRCm39)	V232A	probably damaging	Het
Sgpp2	T	A	1: 78,393,588 (GRCm39)	L197Q	probably damaging	Het
Slc27a4	T	C	2: 29,700,953 (GRCm39)	W320R	probably damaging	Het
Spmip4	T	C	6: 50,550,725 (GRCm39)	R575G	possibly damaging	Het
Tgm4	T	C	9: 122,890,835 (GRCm39)	I54T	probably damaging	Het
Thbs4	T	A	13: 92,927,387 (GRCm39)	D34V	probably benign	Het
Tlcd4	T	G	3: 121,001,070 (GRCm39)	I188L	probably benign	Het
Tmem176b	G	A	6: 48,813,267 (GRCm39)	T64I	probably damaging	Het
Tmod2	T	C	9: 75,484,524 (GRCm39)	E248G	probably benign	Het
Ttc6	T	A	12: 57,784,479 (GRCm39)	D1849E	probably benign	Het
Ttn	T	C	2: 76,615,882 (GRCm39)	D8360G	possibly damaging	Het
Unc80	A	G	1: 66,679,711 (GRCm39)	E2094G	possibly damaging	Het
Vmn2r18	A	T	5: 151,508,160 (GRCm39)	D321E	probably damaging	Het

Other mutations in Dhx38

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00508:Dhx38	APN	8	110,283,566 (GRCm39)	missense	possibly damaging	0.49
IGL00821:Dhx38	APN	8	110,282,286 (GRCm39)	missense	probably benign	0.00
IGL00910:Dhx38	APN	8	110,285,666 (GRCm39)	missense	probably benign	0.07
IGL01011:Dhx38	APN	8	110,289,323 (GRCm39)	missense	probably benign
IGL01401:Dhx38	APN	8	110,278,746 (GRCm39)	missense	probably benign	0.15
IGL02133:Dhx38	APN	8	110,284,873 (GRCm39)	nonsense	probably null
IGL02529:Dhx38	APN	8	110,285,645 (GRCm39)	missense	probably benign	0.00
IGL02652:Dhx38	APN	8	110,282,761 (GRCm39)	missense	probably damaging	1.00
IGL03241:Dhx38	APN	8	110,289,288 (GRCm39)	missense	possibly damaging	0.47
IGL03378:Dhx38	APN	8	110,285,722 (GRCm39)	splice site	probably null
R0358:Dhx38	UTSW	8	110,279,094 (GRCm39)	missense	probably benign	0.13
R0375:Dhx38	UTSW	8	110,281,813 (GRCm39)	missense	possibly damaging	0.89
R0437:Dhx38	UTSW	8	110,285,261 (GRCm39)	splice site	probably benign
R0481:Dhx38	UTSW	8	110,282,848 (GRCm39)	splice site	probably benign
R0492:Dhx38	UTSW	8	110,288,576 (GRCm39)	splice site	probably benign
R0528:Dhx38	UTSW	8	110,289,293 (GRCm39)	missense	probably benign	0.00
R0607:Dhx38	UTSW	8	110,285,575 (GRCm39)	missense	probably benign	0.07
R1638:Dhx38	UTSW	8	110,280,177 (GRCm39)	missense	probably damaging	1.00
R2020:Dhx38	UTSW	8	110,283,501 (GRCm39)	splice site	probably benign
R2096:Dhx38	UTSW	8	110,280,891 (GRCm39)	missense	probably damaging	1.00
R2152:Dhx38	UTSW	8	110,287,306 (GRCm39)	missense	probably benign	0.00
R2154:Dhx38	UTSW	8	110,287,306 (GRCm39)	missense	probably benign	0.00
R2382:Dhx38	UTSW	8	110,282,772 (GRCm39)	missense	probably damaging	0.99
R4367:Dhx38	UTSW	8	110,279,763 (GRCm39)	missense	probably damaging	1.00
R4368:Dhx38	UTSW	8	110,279,763 (GRCm39)	missense	probably damaging	1.00
R4369:Dhx38	UTSW	8	110,279,763 (GRCm39)	missense	probably damaging	1.00
R5250:Dhx38	UTSW	8	110,283,152 (GRCm39)	missense	probably damaging	1.00
R5354:Dhx38	UTSW	8	110,282,378 (GRCm39)	missense	probably damaging	1.00
R5668:Dhx38	UTSW	8	110,280,048 (GRCm39)	missense	probably damaging	1.00
R5777:Dhx38	UTSW	8	110,283,534 (GRCm39)	missense	possibly damaging	0.81
R5784:Dhx38	UTSW	8	110,286,245 (GRCm39)	nonsense	probably null
R6799:Dhx38	UTSW	8	110,279,834 (GRCm39)	missense	probably damaging	1.00
R6915:Dhx38	UTSW	8	110,286,231 (GRCm39)	missense	probably benign	0.15
R6932:Dhx38	UTSW	8	110,279,307 (GRCm39)	missense	probably damaging	1.00
R7042:Dhx38	UTSW	8	110,283,617 (GRCm39)	missense	possibly damaging	0.55
R7248:Dhx38	UTSW	8	110,285,559 (GRCm39)	missense	probably benign	0.15
R7394:Dhx38	UTSW	8	110,283,155 (GRCm39)	missense	probably damaging	1.00
R7513:Dhx38	UTSW	8	110,287,221 (GRCm39)	missense	probably benign	0.00
R7569:Dhx38	UTSW	8	110,287,327 (GRCm39)	missense	probably damaging	0.98
R8003:Dhx38	UTSW	8	110,282,772 (GRCm39)	missense	probably damaging	0.99
R8071:Dhx38	UTSW	8	110,285,333 (GRCm39)	missense	probably benign	0.10
R8537:Dhx38	UTSW	8	110,280,012 (GRCm39)	missense	probably damaging	1.00
R8852:Dhx38	UTSW	8	110,289,361 (GRCm39)	nonsense	probably null
R8860:Dhx38	UTSW	8	110,289,361 (GRCm39)	nonsense	probably null
R8937:Dhx38	UTSW	8	110,283,098 (GRCm39)	missense	probably damaging	0.96
R9099:Dhx38	UTSW	8	110,282,783 (GRCm39)	missense	probably damaging	1.00
Z1177:Dhx38	UTSW	8	110,282,717 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GGGCGAATATTTTCTGACCACC -3'
(R):5'- AAGATGTTCTGGGCTCAGTG -3'

Sequencing Primer
(F):5'- CCTCCCAGTCTTTGTAAGAAGAG -3'
(R):5'- CTGGGCTCAGTGTAGGGAG -3'

Posted On

2014-09-17