Mutagenetix > Incidental Mutation

Incidental Mutation 'R0153:Abcb9'

22829

Institutional Source

Beutler Lab

Gene Symbol

Abcb9

Ensembl Gene

ENSMUSG00000029408

Gene Name

ATP-binding cassette, sub-family B member 9

Synonyms

TAPL

MMRRC Submission

038436-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0153 (G1)

Quality Score

225

Status

Validated (trace)

Chromosome

Chromosomal Location

124199920-124234009 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 124218119 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Valine at position 406 (M406V)

Ref Sequence

ENSEMBL: ENSMUSP00000031354 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031354] [ENSMUST00000126856] [ENSMUST00000141510]

AlphaFold

Q9JJ59

Predicted Effect

probably benign
Transcript: ENSMUST00000031354
AA Change: M406V

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000031354
Gene: ENSMUSG00000029408
AA Change: M406V

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
transmembrane domain	82	104	N/A	INTRINSIC
transmembrane domain	116	138	N/A	INTRINSIC
Pfam:ABC_membrane	184	453	1.9e-61	PFAM
AAA	527	713	4.07e-17	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000126856

SMART Domains

Protein: ENSMUSP00000118908
Gene: ENSMUSG00000029408

Domain	Start	End	E-Value	Type
transmembrane domain	7	27	N/A	INTRINSIC
transmembrane domain	47	69	N/A	INTRINSIC
transmembrane domain	82	104	N/A	INTRINSIC
transmembrane domain	114	136	N/A	INTRINSIC
transmembrane domain	181	203	N/A	INTRINSIC
transmembrane domain	218	237	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000141510

SMART Domains

Protein: ENSMUSP00000122969
Gene: ENSMUSG00000029408

Domain	Start	End	E-Value	Type
transmembrane domain	7	27	N/A	INTRINSIC
transmembrane domain	47	69	N/A	INTRINSIC
transmembrane domain	82	104	N/A	INTRINSIC
transmembrane domain	114	136	N/A	INTRINSIC
transmembrane domain	181	203	N/A	INTRINSIC
transmembrane domain	218	237	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148392

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153433

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000196486

Meta Mutation Damage Score

0.1158

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.5%
20x: 90.1%

Validation Efficiency

97% (99/102)

MGI Phenotype

FUNCTION: The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance as well as antigen presentation. The function of this half-transporter has not yet been determined; however, it may be associated with lysosome activity. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adar	T	C	3: 89,638,121 (GRCm39)	S2P	probably benign	Het
Adgre1	T	A	17: 57,750,939 (GRCm39)	S538T	possibly damaging	Het
Alms1	T	A	6: 85,618,363 (GRCm39)	I2803N	possibly damaging	Het
Amn1	G	T	6: 149,090,091 (GRCm39)		probably benign	Het
Arid1b	G	A	17: 5,393,207 (GRCm39)	A2246T	probably damaging	Het
BC024139	T	C	15: 76,005,947 (GRCm39)	E418G	probably damaging	Het
Bok	A	G	1: 93,614,239 (GRCm39)	D24G	probably damaging	Het
Cabp2	T	C	19: 4,134,913 (GRCm39)		probably benign	Het
Ccdc141	C	A	2: 76,995,582 (GRCm39)		probably benign	Het
Ccdc178	T	C	18: 22,283,492 (GRCm39)	T13A	probably benign	Het
Ccdc42	G	T	11: 68,478,476 (GRCm39)	V33F	possibly damaging	Het
Clcn7	G	A	17: 25,368,176 (GRCm39)		probably benign	Het
Cluh	A	G	11: 74,548,176 (GRCm39)		probably benign	Het
Cr1l	A	T	1: 194,797,164 (GRCm39)		probably benign	Het
Cracdl	A	G	1: 37,663,720 (GRCm39)	V726A	probably benign	Het
Csnk1g3	T	A	18: 54,051,861 (GRCm39)		probably benign	Het
Depdc5	T	C	5: 33,091,281 (GRCm39)		probably benign	Het
Dgkh	A	C	14: 78,807,569 (GRCm39)	Y1149*	probably null	Het
Dipk2a	G	T	9: 94,406,533 (GRCm39)	D291E	probably benign	Het
Dnai1	A	G	4: 41,635,162 (GRCm39)		probably benign	Het
Dync2i1	A	G	12: 116,196,256 (GRCm39)	V497A	probably benign	Het
Efcab2	A	G	1: 178,302,451 (GRCm39)	E65G	possibly damaging	Het
Eif4a3l1	A	T	6: 136,305,842 (GRCm39)	D101V	probably damaging	Het
Eno1b	T	C	18: 48,180,806 (GRCm39)	I328T	probably benign	Het
Fgfr4	A	G	13: 55,309,198 (GRCm39)		probably benign	Het
Garin5b	A	T	7: 4,773,286 (GRCm39)	L177Q	probably damaging	Het
Gm10720	A	C	9: 3,015,787 (GRCm39)	S44R	probably null	Het
Gm17535	T	A	9: 3,035,786 (GRCm39)	L218H	probably benign	Het
Gm6471	A	T	7: 142,385,368 (GRCm39)		noncoding transcript	Het
Hnrnpm	C	T	17: 33,865,489 (GRCm39)	R724Q	probably damaging	Het
Homer1	C	T	13: 93,528,254 (GRCm39)	T117I	possibly damaging	Het
Hoxd4	A	T	2: 74,557,801 (GRCm39)	Q60L	probably damaging	Het
Ift172	T	C	5: 31,417,968 (GRCm39)	R1274G	probably benign	Het
Ino80d	A	G	1: 63,097,477 (GRCm39)	S806P	probably damaging	Het
Itga10	T	C	3: 96,561,016 (GRCm39)	V627A	probably benign	Het
Itgb2l	A	G	16: 96,238,569 (GRCm39)	Y77H	possibly damaging	Het
Kel	A	T	6: 41,678,877 (GRCm39)	H195Q	probably benign	Het
Klhdc7a	A	G	4: 139,694,582 (GRCm39)	S122P	possibly damaging	Het
Krt71	T	A	15: 101,643,141 (GRCm39)	I456F	possibly damaging	Het
Lats1	T	A	10: 7,567,339 (GRCm39)	S37T	probably damaging	Het
Lrp1b	T	A	2: 41,013,031 (GRCm39)	H1858L	possibly damaging	Het
Matk	A	T	10: 81,098,676 (GRCm39)	T461S	probably benign	Het
Meikin	A	G	11: 54,300,468 (GRCm39)		probably benign	Het
Muc6	T	C	7: 141,214,029 (GRCm39)	Q2832R	possibly damaging	Het
Myo10	T	C	15: 25,781,324 (GRCm39)	F194L	possibly damaging	Het
Nbas	G	A	12: 13,323,877 (GRCm39)		probably benign	Het
Nme4	A	G	17: 26,312,831 (GRCm39)		probably null	Het
Or13p8	A	T	4: 118,583,530 (GRCm39)	I29F	possibly damaging	Het
Or4c112	T	A	2: 88,853,540 (GRCm39)	N269I	probably benign	Het
Or5w13	A	G	2: 87,523,948 (GRCm39)	S93P	probably benign	Het
Or7g32	T	A	9: 19,408,233 (GRCm39)	L63H	probably damaging	Het
Or8g34	T	C	9: 39,372,967 (GRCm39)	V80A	probably damaging	Het
Pacsin2	T	C	15: 83,261,862 (GRCm39)	Q473R	probably benign	Het
Patz1	A	G	11: 3,243,288 (GRCm39)	H427R	probably damaging	Het
Pkp3	A	G	7: 140,663,256 (GRCm39)	Y367C	probably damaging	Het
Prdm2	G	A	4: 142,860,338 (GRCm39)	P984L	possibly damaging	Het
Rev3l	T	A	10: 39,750,124 (GRCm39)	C3091*	probably null	Het
Rims4	C	T	2: 163,705,849 (GRCm39)	V262M	possibly damaging	Het
Rpl5	T	C	5: 108,052,623 (GRCm39)	F140L	probably benign	Het
Sec24a	A	C	11: 51,591,653 (GRCm39)	I1014M	probably benign	Het
Serpinb11	A	G	1: 107,299,933 (GRCm39)	H93R	probably benign	Het
Shank2	C	A	7: 143,623,872 (GRCm39)	H286N	probably benign	Het
Sipa1l2	G	T	8: 126,148,637 (GRCm39)	Q1651K	probably damaging	Het
Slc17a3	C	T	13: 24,039,841 (GRCm39)	S293F	probably damaging	Het
Slc30a5	A	T	13: 100,963,002 (GRCm39)	F75L	possibly damaging	Het
Slco1a1	G	T	6: 141,856,427 (GRCm39)		probably benign	Het
Smg5	C	T	3: 88,261,179 (GRCm39)		probably benign	Het
Snapc1	C	T	12: 74,021,806 (GRCm39)	R81C	probably damaging	Het
Taf8	A	T	17: 47,809,177 (GRCm39)		probably benign	Het
Tars3	A	G	7: 65,333,829 (GRCm39)	D617G	probably damaging	Het
Tbc1d5	A	T	17: 51,291,715 (GRCm39)		probably benign	Het
Tfcp2	C	G	15: 100,412,708 (GRCm39)	E315Q	probably damaging	Het
Tmf1	A	T	6: 97,147,345 (GRCm39)	S540R	probably damaging	Het
Tmprss4	T	C	9: 45,095,634 (GRCm39)	Q70R	probably benign	Het
Trip13	G	T	13: 74,068,183 (GRCm39)	A266E	possibly damaging	Het
Ttc24	T	A	3: 87,982,234 (GRCm39)		probably benign	Het
Ttll5	T	A	12: 85,878,740 (GRCm39)	I49N	probably damaging	Het
Tut7	G	A	13: 59,930,150 (GRCm39)	R962*	probably null	Het
Ube2ql1	A	T	13: 69,886,711 (GRCm39)	M250K	possibly damaging	Het
Vmn1r87	A	T	7: 12,866,211 (GRCm39)	D25E	probably damaging	Het
Vmn2r84	A	G	10: 130,227,877 (GRCm39)	Y120H	probably benign	Het
Wdr6	G	A	9: 108,452,441 (GRCm39)	R481C	probably damaging	Het
Zdhhc17	A	T	10: 110,790,955 (GRCm39)	Y371*	probably null	Het
Zfp292	T	C	4: 34,811,185 (GRCm39)	N620D	probably benign	Het
Zfp932	T	A	5: 110,154,834 (GRCm39)	Y11N	probably benign	Het

Other mutations in Abcb9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00499:Abcb9	APN	5	124,215,301 (GRCm39)	missense	possibly damaging	0.90
R0045:Abcb9	UTSW	5	124,220,148 (GRCm39)	missense	probably damaging	0.96
R0106:Abcb9	UTSW	5	124,221,123 (GRCm39)	missense	possibly damaging	0.70
R0194:Abcb9	UTSW	5	124,215,358 (GRCm39)	missense	probably damaging	0.99
R0458:Abcb9	UTSW	5	124,220,209 (GRCm39)	critical splice acceptor site	probably null
R0669:Abcb9	UTSW	5	124,200,950 (GRCm39)	missense	probably damaging	0.97
R1240:Abcb9	UTSW	5	124,227,984 (GRCm39)	missense	probably benign	0.02
R1480:Abcb9	UTSW	5	124,216,889 (GRCm39)	missense	probably benign	0.00
R1544:Abcb9	UTSW	5	124,221,694 (GRCm39)	missense	probably benign
R1878:Abcb9	UTSW	5	124,228,199 (GRCm39)	missense	probably benign	0.02
R2355:Abcb9	UTSW	5	124,215,368 (GRCm39)	frame shift	probably null
R2358:Abcb9	UTSW	5	124,215,368 (GRCm39)	frame shift	probably null
R2520:Abcb9	UTSW	5	124,218,091 (GRCm39)	splice site	probably null
R2926:Abcb9	UTSW	5	124,216,902 (GRCm39)	missense	possibly damaging	0.84
R3795:Abcb9	UTSW	5	124,228,212 (GRCm39)	missense	probably benign	0.05
R3911:Abcb9	UTSW	5	124,227,909 (GRCm39)	missense	probably benign	0.06
R4679:Abcb9	UTSW	5	124,216,867 (GRCm39)	missense	probably benign	0.20
R4789:Abcb9	UTSW	5	124,216,853 (GRCm39)	missense	probably benign	0.00
R4821:Abcb9	UTSW	5	124,228,212 (GRCm39)	missense	probably benign	0.05
R5116:Abcb9	UTSW	5	124,216,930 (GRCm39)	missense	probably damaging	1.00
R5804:Abcb9	UTSW	5	124,218,118 (GRCm39)	missense	probably benign
R5997:Abcb9	UTSW	5	124,227,878 (GRCm39)	missense	possibly damaging	0.85
R6197:Abcb9	UTSW	5	124,209,812 (GRCm39)	nonsense	probably null
R7172:Abcb9	UTSW	5	124,200,869 (GRCm39)	nonsense	probably null
R7705:Abcb9	UTSW	5	124,220,018 (GRCm39)	nonsense	probably null
R7783:Abcb9	UTSW	5	124,216,875 (GRCm39)	nonsense	probably null
R7953:Abcb9	UTSW	5	124,211,665 (GRCm39)	missense	probably damaging	1.00
R7994:Abcb9	UTSW	5	124,220,090 (GRCm39)	missense	probably benign	0.13
R8043:Abcb9	UTSW	5	124,211,665 (GRCm39)	missense	probably damaging	1.00
R8079:Abcb9	UTSW	5	124,221,186 (GRCm39)	missense	possibly damaging	0.91
R8099:Abcb9	UTSW	5	124,215,308 (GRCm39)	missense	probably benign	0.02
R8395:Abcb9	UTSW	5	124,218,280 (GRCm39)	missense	possibly damaging	0.70
R8790:Abcb9	UTSW	5	124,215,304 (GRCm39)	missense	probably damaging	1.00
R8927:Abcb9	UTSW	5	124,221,706 (GRCm39)	missense	probably benign	0.00
R8928:Abcb9	UTSW	5	124,221,706 (GRCm39)	missense	probably benign	0.00
R9102:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62
R9108:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62
R9135:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62
R9136:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62
R9138:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62
R9217:Abcb9	UTSW	5	124,214,090 (GRCm39)	missense	possibly damaging	0.95
R9337:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62
R9338:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62
R9339:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62
R9412:Abcb9	UTSW	5	124,221,753 (GRCm39)	missense	probably benign	0.03
R9461:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62
R9481:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62
R9512:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62
R9520:Abcb9	UTSW	5	124,228,176 (GRCm39)	missense	possibly damaging	0.62

Predicted Primers

PCR Primer
(F):5'- TGAGGATACATGCTCCTACCGACC -3'
(R):5'- TGTGCTGCTGATAAACTCTGCCCC -3'

Sequencing Primer
(F):5'- CCGACCCTGCCACCTTG -3'
(R):5'- AAACCATCAGCGCGATGA -3'

Posted On

2013-04-16