Mutagenetix > Incidental Mutation

Incidental Mutation 'R2063:Rapgef3'

228890

Institutional Source

Beutler Lab

Gene Symbol

Rapgef3

Ensembl Gene

ENSMUSG00000022469

Gene Name

Rap guanine nucleotide exchange factor (GEF) 3

Synonyms

Epac1, 9330170P05Rik, 2310016P22Rik

MMRRC Submission

040068-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.267) question?

Stock #

R2063 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

97642651-97665853 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 97664842 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Valine at position 7 (G7V)

Ref Sequence

ENSEMBL: ENSMUSP00000117337 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000126854] [ENSMUST00000128775] [ENSMUST00000129223] [ENSMUST00000134885] [ENSMUST00000135080] [ENSMUST00000175894] [ENSMUST00000146620] [ENSMUST00000177352] [ENSMUST00000149419]

AlphaFold

Q8VCC8

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123397

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124374

Predicted Effect

probably damaging
Transcript: ENSMUST00000126854
AA Change: G7V

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000116426
Gene: ENSMUSG00000022469
AA Change: G7V

Domain	Start	End	E-Value	Type
DEP	111	186	2.05e-25	SMART
low complexity region	197	208	N/A	INTRINSIC
low complexity region	230	241	N/A	INTRINSIC
cNMP	245	364	2.53e-12	SMART
RasGEFN	383	514	7.04e-10	SMART
Blast:RasGEF	547	644	6e-45	BLAST
RasGEF	661	926	7.98e-95	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000128775
AA Change: G7V

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000120126
Gene: ENSMUSG00000022469
AA Change: G7V

Domain	Start	End	E-Value	Type
DEP	111	186	2.05e-25	SMART
low complexity region	197	208	N/A	INTRINSIC
low complexity region	230	241	N/A	INTRINSIC
cNMP	245	364	2.53e-12	SMART
RasGEFN	383	514	7.04e-10	SMART
Blast:RasGEF	547	644	7e-45	BLAST
RasGEF	661	909	5.53e-80	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000129223
AA Change: G7V

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000118148
Gene: ENSMUSG00000022469
AA Change: G7V

Domain	Start	End	E-Value	Type
DEP	111	186	2.05e-25	SMART
low complexity region	197	208	N/A	INTRINSIC
low complexity region	230	241	N/A	INTRINSIC
cNMP	245	364	2.53e-12	SMART
RasGEFN	383	514	7.04e-10	SMART
Blast:RasGEF	547	644	6e-45	BLAST
RasGEF	661	918	2.11e-85	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000134885

SMART Domains

Protein: ENSMUSP00000135317
Gene: ENSMUSG00000022469

Domain	Start	End	E-Value	Type
RasGEF	1	216	2.91e-56	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000135080
AA Change: G7V

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149373

Predicted Effect

probably damaging
Transcript: ENSMUST00000175894
AA Change: G7V

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

Predicted Effect

probably benign
Transcript: ENSMUST00000146620

SMART Domains

Protein: ENSMUSP00000116673
Gene: ENSMUSG00000022469

Domain	Start	End	E-Value	Type
DEP	69	144	2.05e-25	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000177352

SMART Domains

Protein: ENSMUSP00000135238
Gene: ENSMUSG00000022469

Domain	Start	End	E-Value	Type
DEP	69	144	2.05e-25	SMART
low complexity region	155	166	N/A	INTRINSIC
low complexity region	188	199	N/A	INTRINSIC
cNMP	203	322	2.53e-12	SMART
RasGEFN	341	472	7.04e-10	SMART
Blast:RasGEF	505	602	3e-45	BLAST
RasGEF	619	884	7.98e-95	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000149419

Meta Mutation Damage Score

0.2800

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.4%
20x: 95.5%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased induced neuron apoptosis. Mice homozygous for a different allele exhibit impaired glucose homeostasis with decreased insulin secretion, increased susceptibility to diet-induced obesity and streptozotocin-induced insulitis and hyperglycemia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 89 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933436I01Rik	T	A	X: 66,964,308 (GRCm39)	I184L	probably benign	Het
9530002B09Rik	T	A	4: 122,583,115 (GRCm39)		probably benign	Het
Abca15	A	T	7: 119,960,127 (GRCm39)	T637S	possibly damaging	Het
Adgrv1	T	C	13: 81,709,588 (GRCm39)	K1135R	possibly damaging	Het
Afap1l1	A	T	18: 61,872,193 (GRCm39)		probably null	Het
AI467606	A	G	7: 126,692,009 (GRCm39)	S195G	probably damaging	Het
Alox12e	G	A	11: 70,206,828 (GRCm39)	R620W	probably damaging	Het
Ascc2	A	T	11: 4,631,496 (GRCm39)	M646L	probably benign	Het
Ccnt1	A	T	15: 98,449,823 (GRCm39)	H156Q	probably benign	Het
Cic	T	A	7: 24,972,876 (GRCm39)	V869E	probably damaging	Het
Cpsf2	A	G	12: 101,949,722 (GRCm39)	D118G	probably damaging	Het
Csnk1g1	A	G	9: 65,909,512 (GRCm39)	S210G	probably damaging	Het
Cyp2c40	T	A	19: 39,775,224 (GRCm39)	M343L	probably benign	Het
Cyp4a12b	A	T	4: 115,290,700 (GRCm39)	D274V	possibly damaging	Het
Dnaaf3	T	C	7: 4,526,798 (GRCm39)	I426M	possibly damaging	Het
Dnah3	C	T	7: 119,551,132 (GRCm39)	M3062I	probably damaging	Het
Dtx2	C	T	5: 136,059,431 (GRCm39)	S493F	probably damaging	Het
Elavl2	A	T	4: 91,141,687 (GRCm39)	S278R	possibly damaging	Het
Emilin2	T	C	17: 71,581,950 (GRCm39)	S259G	probably benign	Het
Endov	T	C	11: 119,390,408 (GRCm39)	F12S	probably damaging	Het
Faim2	G	A	15: 99,412,314 (GRCm39)	T140I	probably damaging	Het
Fbxo21	T	C	5: 118,115,031 (GRCm39)	S56P	probably benign	Het
Fgb	C	A	3: 82,956,996 (GRCm39)	D25Y	probably benign	Het
Foxj2	A	T	6: 122,817,200 (GRCm39)	H509L	probably benign	Het
Fth1	T	A	19: 9,961,576 (GRCm39)	L49Q	probably damaging	Het
Gbp11	C	A	5: 105,476,450 (GRCm39)	E220*	probably null	Het
Gm12695	T	C	4: 96,657,963 (GRCm39)	T69A	probably benign	Het
Gm1527	C	A	3: 28,980,796 (GRCm39)	T632N	probably benign	Het
Gm4787	A	T	12: 81,425,694 (GRCm39)	S155T	probably benign	Het
Gtf2f2	A	G	14: 76,155,136 (GRCm39)	S142P	possibly damaging	Het
Helb	T	C	10: 119,941,671 (GRCm39)	Y339C	probably benign	Het
Hs3st4	A	G	7: 123,996,236 (GRCm39)	I301V	probably benign	Het
Hunk	A	G	16: 90,290,368 (GRCm39)	D382G	probably damaging	Het
Ifnb1	T	A	4: 88,440,996 (GRCm39)	I6F	possibly damaging	Het
Il10	T	C	1: 130,947,770 (GRCm39)	L41P	probably damaging	Het
Il2rg	A	G	X: 100,311,416 (GRCm39)	L57P	possibly damaging	Het
Invs	T	A	4: 48,396,287 (GRCm39)	L320Q	probably damaging	Het
Itpr3	G	A	17: 27,317,050 (GRCm39)	M768I	probably benign	Het
Krt90	T	C	15: 101,466,794 (GRCm39)	E263G	probably benign	Het
Lama2	C	T	10: 27,040,922 (GRCm39)	C1467Y	probably damaging	Het
Maco1	A	T	4: 134,555,590 (GRCm39)	N294K	possibly damaging	Het
Med24	A	G	11: 98,606,472 (GRCm39)	L330P	probably damaging	Het
Mrto4	T	C	4: 139,076,334 (GRCm39)	K86E	probably benign	Het
Mtcl1	T	C	17: 66,653,350 (GRCm39)	R1065G	probably damaging	Het
Mtmr14	G	A	6: 113,217,322 (GRCm39)	G38D	probably damaging	Het
Mtus1	T	C	8: 41,535,745 (GRCm39)	E657G	probably damaging	Het
Muc21	T	A	17: 35,932,297 (GRCm39)		probably benign	Het
Myo5c	A	T	9: 75,189,150 (GRCm39)	Q1020L	probably benign	Het
Nav1	C	T	1: 135,376,742 (GRCm39)	R1694Q	probably damaging	Het
Nckap1	T	C	2: 80,400,494 (GRCm39)	K69R	probably damaging	Het
Nlrp1b	T	C	11: 71,051,912 (GRCm39)	N1012D	probably benign	Het
Ntrk2	A	C	13: 59,007,111 (GRCm39)	K238Q	probably damaging	Het
Oas1g	T	C	5: 121,023,946 (GRCm39)	E121G	probably damaging	Het
Or2ab1	A	G	11: 58,488,396 (GRCm39)	N58S	probably damaging	Het
Or52n2b	T	C	7: 104,565,982 (GRCm39)	N174D	probably benign	Het
Pcdh8	A	T	14: 80,005,651 (GRCm39)	S912R	probably damaging	Het
Pfpl	C	T	19: 12,407,237 (GRCm39)	S496L	probably damaging	Het
Phc2	T	C	4: 128,640,929 (GRCm39)	F672S	probably damaging	Het
Pkhd1l1	A	T	15: 44,414,148 (GRCm39)	H2805L	possibly damaging	Het
Pla2g4a	T	C	1: 149,716,427 (GRCm39)	N678S	possibly damaging	Het
Plxnb3	T	A	X: 72,815,357 (GRCm39)	Y1845*	probably null	Het
Polr1a	T	G	6: 71,913,269 (GRCm39)		probably null	Het
Prl3d3	A	C	13: 27,346,304 (GRCm39)	E180D	probably benign	Het
Prl7a2	T	A	13: 27,844,870 (GRCm39)	Y172F	probably damaging	Het
Prpf3	A	T	3: 95,751,551 (GRCm39)	D383E	probably benign	Het
Psmc4	A	T	7: 27,748,322 (GRCm39)	L73H	probably damaging	Het
Rasl12	G	A	9: 65,318,106 (GRCm39)	G157R	probably damaging	Het
Rnf38	A	C	4: 44,149,098 (GRCm39)	V83G	probably damaging	Het
Rnls	A	C	19: 33,179,944 (GRCm39)	S51A	probably benign	Het
Siglecf	A	G	7: 43,001,804 (GRCm39)	T205A	possibly damaging	Het
Skint1	T	A	4: 111,882,730 (GRCm39)	V258D	probably benign	Het
Slc12a5	C	T	2: 164,839,067 (GRCm39)	R1072W	probably damaging	Het
Spata13	GTTAGGCT	GT	14: 60,998,320 (GRCm39)		probably benign	Het
Specc1	T	G	11: 62,009,122 (GRCm39)	S293A	probably benign	Het
Speer2	T	G	16: 69,657,385 (GRCm39)	Q86P	probably benign	Het
Tbc1d15	T	C	10: 115,065,078 (GRCm39)	D169G	probably benign	Het
Tbx20	C	A	9: 24,681,067 (GRCm39)	E142*	probably null	Het
Tcp1	T	A	17: 13,139,699 (GRCm39)	L199H	probably damaging	Het
Tex26	A	T	5: 149,363,204 (GRCm39)	R5W	probably damaging	Het
Tg	C	A	15: 66,700,402 (GRCm39)	A120E	probably damaging	Het
Thrap3	T	C	4: 126,069,189 (GRCm39)	Y654C	possibly damaging	Het
Troap	T	C	15: 98,980,344 (GRCm39)	L508P	probably benign	Het
Ubap2	C	T	4: 41,199,872 (GRCm39)	A752T	probably benign	Het
Ush1c	T	C	7: 45,878,905 (GRCm39)	Y74C	probably damaging	Het
Vmn1r55	A	G	7: 5,150,048 (GRCm39)	V125A	possibly damaging	Het
Vmn2r120	T	A	17: 57,831,553 (GRCm39)	H412L	possibly damaging	Het
Vps54	C	T	11: 21,227,955 (GRCm39)	T176I	probably damaging	Het
Wdr95	T	C	5: 149,502,627 (GRCm39)		probably null	Het
Zfp81	T	C	17: 33,554,278 (GRCm39)	T179A	probably benign	Het

Other mutations in Rapgef3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01314:Rapgef3	APN	15	97,646,104 (GRCm39)	missense	probably damaging	1.00
IGL01339:Rapgef3	APN	15	97,655,940 (GRCm39)	missense	probably damaging	1.00
IGL01670:Rapgef3	APN	15	97,647,543 (GRCm39)	missense	probably benign	0.15
IGL01902:Rapgef3	APN	15	97,648,181 (GRCm39)	missense	probably benign	0.32
IGL02137:Rapgef3	APN	15	97,648,025 (GRCm39)	missense	probably benign	0.08
IGL02419:Rapgef3	APN	15	97,648,171 (GRCm39)	missense	probably benign	0.33
IGL02427:Rapgef3	APN	15	97,645,017 (GRCm39)	splice site	probably null
IGL02648:Rapgef3	APN	15	97,656,273 (GRCm39)	missense	probably damaging	1.00
IGL02834:Rapgef3	APN	15	97,646,146 (GRCm39)	missense	probably damaging	0.98
IGL03389:Rapgef3	APN	15	97,647,397 (GRCm39)	missense	probably damaging	1.00
IGL03055:Rapgef3	UTSW	15	97,647,370 (GRCm39)	splice site	probably benign
R0394:Rapgef3	UTSW	15	97,655,700 (GRCm39)	intron	probably benign
R0538:Rapgef3	UTSW	15	97,655,698 (GRCm39)	intron	probably benign
R0744:Rapgef3	UTSW	15	97,659,466 (GRCm39)	splice site	probably benign
R1288:Rapgef3	UTSW	15	97,657,223 (GRCm39)	missense	probably benign	0.31
R1512:Rapgef3	UTSW	15	97,655,382 (GRCm39)	missense	probably benign	0.24
R1676:Rapgef3	UTSW	15	97,659,063 (GRCm39)	missense	probably benign	0.35
R1745:Rapgef3	UTSW	15	97,648,059 (GRCm39)	missense	probably benign	0.22
R1928:Rapgef3	UTSW	15	97,647,914 (GRCm39)	missense	probably damaging	1.00
R2067:Rapgef3	UTSW	15	97,664,842 (GRCm39)	missense	probably damaging	1.00
R2092:Rapgef3	UTSW	15	97,658,604 (GRCm39)	missense	probably damaging	1.00
R4358:Rapgef3	UTSW	15	97,646,529 (GRCm39)	missense	probably benign	0.05
R4624:Rapgef3	UTSW	15	97,656,810 (GRCm39)	missense	probably damaging	1.00
R4627:Rapgef3	UTSW	15	97,656,810 (GRCm39)	missense	probably damaging	1.00
R4727:Rapgef3	UTSW	15	97,658,481 (GRCm39)	missense	probably damaging	1.00
R4812:Rapgef3	UTSW	15	97,651,684 (GRCm39)	missense	probably benign	0.21
R4928:Rapgef3	UTSW	15	97,655,256 (GRCm39)	missense	probably damaging	1.00
R5161:Rapgef3	UTSW	15	97,655,606 (GRCm39)	missense	probably damaging	1.00
R5442:Rapgef3	UTSW	15	97,656,742 (GRCm39)	missense	probably damaging	0.99
R5652:Rapgef3	UTSW	15	97,656,318 (GRCm39)	missense	probably benign	0.00
R5837:Rapgef3	UTSW	15	97,655,223 (GRCm39)	splice site	probably benign
R6056:Rapgef3	UTSW	15	97,656,742 (GRCm39)	missense	probably damaging	0.99
R6167:Rapgef3	UTSW	15	97,665,292 (GRCm39)	unclassified	probably benign
R6694:Rapgef3	UTSW	15	97,657,865 (GRCm39)	missense	probably benign	0.03
R7039:Rapgef3	UTSW	15	97,659,449 (GRCm39)	missense	probably benign	0.01
R7154:Rapgef3	UTSW	15	97,651,758 (GRCm39)	missense	probably benign
R7380:Rapgef3	UTSW	15	97,664,672 (GRCm39)	missense	probably benign	0.00
R7655:Rapgef3	UTSW	15	97,659,090 (GRCm39)	missense	probably damaging	1.00
R7656:Rapgef3	UTSW	15	97,659,090 (GRCm39)	missense	probably damaging	1.00
R7754:Rapgef3	UTSW	15	97,655,627 (GRCm39)	missense	probably damaging	1.00
R7849:Rapgef3	UTSW	15	97,656,271 (GRCm39)	critical splice donor site	probably null
R8061:Rapgef3	UTSW	15	97,659,401 (GRCm39)	missense	probably benign
R8117:Rapgef3	UTSW	15	97,648,747 (GRCm39)	missense	probably benign	0.01
R8179:Rapgef3	UTSW	15	97,658,621 (GRCm39)	missense	probably benign	0.06
R8819:Rapgef3	UTSW	15	97,646,538 (GRCm39)	missense	probably benign	0.39
R8820:Rapgef3	UTSW	15	97,646,538 (GRCm39)	missense	probably benign	0.39
R8824:Rapgef3	UTSW	15	97,664,789 (GRCm39)	missense	probably benign	0.39
R9779:Rapgef3	UTSW	15	97,643,479 (GRCm39)	missense	probably damaging	0.99
R9781:Rapgef3	UTSW	15	97,643,479 (GRCm39)	missense	probably damaging	0.99
R9782:Rapgef3	UTSW	15	97,643,479 (GRCm39)	missense	probably damaging	0.99
RF024:Rapgef3	UTSW	15	97,658,621 (GRCm39)	missense	probably benign	0.06
X0011:Rapgef3	UTSW	15	97,659,354 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- TTGCTCTGGAGAAAGCTGCC -3'
(R):5'- TGAGTTGAGTGGAGACCCCTAG -3'

Sequencing Primer
(F):5'- AGTCCCTGGATGCAGCTG -3'
(R):5'- CCCCTAGGTGCGCCAAG -3'

Posted On

2014-09-17