Mutagenetix > Incidental Mutation

Incidental Mutation 'R2125:Tdrd5'

229716

Institutional Source

Beutler Lab

Gene Symbol

Tdrd5

Ensembl Gene

ENSMUSG00000060985

Gene Name

tudor domain containing 5

Synonyms

MMRRC Submission

040128-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.181) question?

Stock #

R2125 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

156082866-156131234 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 156104143 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glycine at position 528 (R528G)

Ref Sequence

ENSEMBL: ENSMUSP00000137182 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000121146] [ENSMUST00000167528]

AlphaFold

Q5VCS6

Predicted Effect

probably damaging
Transcript: ENSMUST00000121146
AA Change: R605G

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000137298
Gene: ENSMUSG00000060985
AA Change: R605G

Domain	Start	End	E-Value	Type
Pfam:OST-HTH	6	76	3.7e-11	PFAM
Pfam:OST-HTH	126	194	1.5e-10	PFAM
Pfam:OST-HTH	290	361	7.4e-10	PFAM
TUDOR	532	590	3.25e-7	SMART
low complexity region	739	753	N/A	INTRINSIC
low complexity region	1001	1021	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148277

Predicted Effect

probably damaging
Transcript: ENSMUST00000167528
AA Change: R528G

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000137182
Gene: ENSMUSG00000060985
AA Change: R528G

Domain	Start	End	E-Value	Type
Pfam:OST-HTH	6	75	1.4e-9	PFAM
Pfam:OST-HTH	213	284	6.4e-9	PFAM
TUDOR	455	513	3.25e-7	SMART
low complexity region	662	676	N/A	INTRINSIC
low complexity region	924	944	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.2%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit male infertility associated with defective spermatid elongation, occasional arrested male meiosis, and apoptosis of male germ cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 89 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadac	A	G	3: 59,947,066 (GRCm39)	T255A	possibly damaging	Het
Abcb10	A	C	8: 124,691,831 (GRCm39)	V378G	probably benign	Het
Ackr2	C	T	9: 121,737,852 (GRCm39)	R76*	probably null	Het
Acly	T	C	11: 100,414,322 (GRCm39)	T35A	probably benign	Het
Acp7	A	C	7: 28,328,974 (GRCm39)	F69V	probably damaging	Het
Acsl3	T	A	1: 78,659,678 (GRCm39)	I110N	probably damaging	Het
Adam5	C	T	8: 25,305,134 (GRCm39)	V107M	probably damaging	Het
Adck2	T	C	6: 39,552,076 (GRCm39)	V281A	probably benign	Het
Adgrv1	A	G	13: 81,567,654 (GRCm39)	V5173A	probably benign	Het
Adgrv1	A	T	13: 81,568,069 (GRCm39)	S5035T	probably benign	Het
Arl10	T	A	13: 54,726,937 (GRCm39)		probably null	Het
B3gnt3	A	G	8: 72,146,002 (GRCm39)	W176R	probably damaging	Het
B4galt4	T	C	16: 38,586,300 (GRCm39)	I3T	probably damaging	Het
Casr	T	C	16: 36,315,614 (GRCm39)	I819V	possibly damaging	Het
Cdh1	T	C	8: 107,383,472 (GRCm39)	V237A	probably damaging	Het
Col22a1	G	A	15: 71,720,426 (GRCm39)	R605C	unknown	Het
Crlf3	A	G	11: 79,950,081 (GRCm39)	V183A	probably benign	Het
Crtac1	C	A	19: 42,312,171 (GRCm39)	V181L	probably damaging	Het
Dclk2	C	T	3: 86,712,946 (GRCm39)	R503Q	possibly damaging	Het
Dnah12	A	T	14: 26,445,613 (GRCm39)	R725*	probably null	Het
Dnhd1	A	T	7: 105,327,178 (GRCm39)	H709L	probably benign	Het
Dop1a	A	G	9: 86,403,099 (GRCm39)	Y1431C	probably damaging	Het
Ecpas	T	C	4: 58,833,978 (GRCm39)	H834R	probably benign	Het
Eif2ak4	A	T	2: 118,252,604 (GRCm39)	H392L	probably benign	Het
Entpd3	T	C	9: 120,384,720 (GRCm39)	I99T	probably damaging	Het
Epha6	T	C	16: 59,503,051 (GRCm39)	D952G	probably damaging	Het
Exoc6	T	C	19: 37,579,389 (GRCm39)	L429P	probably damaging	Het
F13a1	A	G	13: 37,076,815 (GRCm39)	S625P	probably benign	Het
Fcgbpl1	A	T	7: 27,857,447 (GRCm39)	Y2265F	probably benign	Het
Fcho2	T	C	13: 98,912,406 (GRCm39)	N240S	possibly damaging	Het
Fcrl6	C	T	1: 172,426,815 (GRCm39)	V44M	probably benign	Het
Fmo6	A	T	1: 162,757,527 (GRCm39)	M82K	possibly damaging	Het
Gabrr2	T	G	4: 33,095,548 (GRCm39)	I479R	probably damaging	Het
Gnl2	T	A	4: 124,947,278 (GRCm39)	F633L	probably benign	Het
Greb1l	C	T	18: 10,511,422 (GRCm39)	S648F	probably damaging	Het
Gsap	T	A	5: 21,447,811 (GRCm39)	C290S	probably damaging	Het
Gusb	A	G	5: 130,028,288 (GRCm39)	V268A	probably benign	Het
H2-D1	G	A	17: 35,483,091 (GRCm39)		probably null	Het
Hebp2	T	A	10: 18,417,008 (GRCm39)	E164D	probably benign	Het
Higd1a	A	T	9: 121,679,313 (GRCm39)	I58N	probably damaging	Het
Hoxc13	G	T	15: 102,835,658 (GRCm39)	R262L	probably damaging	Het
Ifih1	A	G	2: 62,453,811 (GRCm39)	V218A	probably benign	Het
Impg2	T	A	16: 56,085,427 (GRCm39)	Y1045N	probably damaging	Het
Kcnk1	A	G	8: 126,722,395 (GRCm39)	E66G	probably damaging	Het
Klkb1	A	G	8: 45,728,541 (GRCm39)	V406A	possibly damaging	Het
Klra10	G	A	6: 130,256,241 (GRCm39)	R138W	probably damaging	Het
Lama2	A	C	10: 26,920,449 (GRCm39)	Y193*	probably null	Het
Larp7	T	C	3: 127,336,779 (GRCm39)	T428A	probably benign	Het
Lipg	T	C	18: 75,078,956 (GRCm39)	N432S	probably benign	Het
Loxl1	T	C	9: 58,200,995 (GRCm39)	D489G	probably damaging	Het
Lrguk	A	G	6: 34,069,837 (GRCm39)	K571E	probably benign	Het
Map3k13	C	T	16: 21,710,894 (GRCm39)	T59I	probably benign	Het
Mertk	T	A	2: 128,604,058 (GRCm39)	D397E	probably benign	Het
Mgat3	G	A	15: 80,096,087 (GRCm39)	V305I	probably benign	Het
Mrtfb	T	C	16: 13,218,668 (GRCm39)	V449A	possibly damaging	Het
Mybpc1	G	A	10: 88,409,299 (GRCm39)	Q66*	probably null	Het
Myo3a	A	G	2: 22,468,186 (GRCm39)	D480G	probably benign	Het
Ndufaf3	C	T	9: 108,443,936 (GRCm39)	R31Q	probably benign	Het
Neb	T	C	2: 52,200,650 (GRCm39)	Y343C	probably damaging	Het
Nrxn3	A	G	12: 89,227,290 (GRCm39)		probably null	Het
Or4c10b	A	G	2: 89,711,982 (GRCm39)	M271V	probably benign	Het
Or8k40	A	T	2: 86,584,796 (GRCm39)	N95K	probably benign	Het
Pcsk4	T	C	10: 80,159,713 (GRCm39)	M379V	probably benign	Het
Pdzd2	A	T	15: 12,373,676 (GRCm39)	V2153E	probably benign	Het
Pkd2l1	T	C	19: 44,142,939 (GRCm39)	D427G	possibly damaging	Het
Plcd4	A	G	1: 74,604,311 (GRCm39)	Y763C	probably damaging	Het
Plekhh1	T	C	12: 79,125,774 (GRCm39)	F1270S	probably damaging	Het
Pmfbp1	T	C	8: 110,246,905 (GRCm39)	V259A	probably damaging	Het
Ptprg	T	C	14: 12,179,283 (GRCm38)	S767P	possibly damaging	Het
Rabl3	T	G	16: 37,377,175 (GRCm39)		probably null	Het
Rffl	T	A	11: 82,709,264 (GRCm39)	H53L	probably damaging	Het
Rif1	GCCACCA	GCCA	2: 52,000,336 (GRCm39)		probably benign	Het
Rtl1	C	T	12: 109,560,355 (GRCm39)	V495I	possibly damaging	Het
Scaf11	A	T	15: 96,317,196 (GRCm39)	D789E	possibly damaging	Het
Scn2a	T	A	2: 65,582,423 (GRCm39)	Y1590*	probably null	Het
Siglech	T	A	7: 55,421,434 (GRCm39)	F190I	probably benign	Het
Slc22a22	C	A	15: 57,117,636 (GRCm39)	A302S	probably damaging	Het
Slc46a3	T	A	5: 147,815,954 (GRCm39)	T458S	probably benign	Het
Spta1	G	T	1: 174,035,910 (GRCm39)	R1072L	possibly damaging	Het
Tbx5	A	G	5: 119,974,988 (GRCm39)	T4A	probably benign	Het
Tfip11	T	C	5: 112,483,529 (GRCm39)	V648A	possibly damaging	Het
Thumpd3	T	C	6: 113,043,749 (GRCm39)	V388A	probably benign	Het
Tmem131l	C	T	3: 83,850,058 (GRCm39)		probably null	Het
Ttf2	C	A	3: 100,855,509 (GRCm39)	Q895H	possibly damaging	Het
Ttn	A	T	2: 76,720,436 (GRCm39)		probably null	Het
Vmn2r13	A	G	5: 109,306,058 (GRCm39)	S507P	probably benign	Het
Vtn	A	G	11: 78,391,049 (GRCm39)	T210A	probably damaging	Het
Zfp1010	C	A	2: 176,957,195 (GRCm39)	C101F	probably damaging	Het
Znhit2	A	G	19: 6,112,091 (GRCm39)	T279A	probably benign	Het

Other mutations in Tdrd5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01651:Tdrd5	APN	1	156,129,397 (GRCm39)	missense	probably benign	0.32
IGL02441:Tdrd5	APN	1	156,087,513 (GRCm39)	splice site	probably benign
IGL02932:Tdrd5	APN	1	156,098,190 (GRCm39)	missense	possibly damaging	0.52
R0049:Tdrd5	UTSW	1	156,129,473 (GRCm39)	missense	probably damaging	1.00
R0416:Tdrd5	UTSW	1	156,113,051 (GRCm39)	missense	probably damaging	0.96
R0518:Tdrd5	UTSW	1	156,090,511 (GRCm39)	missense	probably damaging	0.99
R1439:Tdrd5	UTSW	1	156,105,057 (GRCm39)	missense	probably damaging	1.00
R1454:Tdrd5	UTSW	1	156,087,406 (GRCm39)	missense	probably benign	0.41
R1497:Tdrd5	UTSW	1	156,083,372 (GRCm39)	missense	probably benign	0.28
R1774:Tdrd5	UTSW	1	156,105,079 (GRCm39)	missense	probably damaging	1.00
R2101:Tdrd5	UTSW	1	156,129,209 (GRCm39)	missense	probably damaging	1.00
R2126:Tdrd5	UTSW	1	156,104,143 (GRCm39)	missense	probably damaging	0.99
R2197:Tdrd5	UTSW	1	156,087,435 (GRCm39)	missense	probably benign	0.02
R3820:Tdrd5	UTSW	1	156,113,053 (GRCm39)	missense	probably benign	0.16
R3928:Tdrd5	UTSW	1	156,128,348 (GRCm39)	missense	probably benign	0.06
R4258:Tdrd5	UTSW	1	156,087,312 (GRCm39)	missense	probably benign	0.00
R4502:Tdrd5	UTSW	1	156,128,334 (GRCm39)	missense	probably benign	0.00
R4601:Tdrd5	UTSW	1	156,111,944 (GRCm39)	missense	probably benign	0.12
R4602:Tdrd5	UTSW	1	156,111,944 (GRCm39)	missense	probably benign	0.12
R4610:Tdrd5	UTSW	1	156,111,944 (GRCm39)	missense	probably benign	0.12
R4611:Tdrd5	UTSW	1	156,111,944 (GRCm39)	missense	probably benign	0.12
R4674:Tdrd5	UTSW	1	156,105,005 (GRCm39)	missense	probably damaging	1.00
R4722:Tdrd5	UTSW	1	156,129,945 (GRCm39)	missense	probably benign	0.31
R4778:Tdrd5	UTSW	1	156,083,157 (GRCm39)	missense	probably damaging	0.98
R5737:Tdrd5	UTSW	1	156,128,294 (GRCm39)	missense	probably benign	0.01
R5881:Tdrd5	UTSW	1	156,122,070 (GRCm39)	missense	probably damaging	0.98
R5900:Tdrd5	UTSW	1	156,105,005 (GRCm39)	nonsense	probably null
R6234:Tdrd5	UTSW	1	156,120,947 (GRCm39)	missense	possibly damaging	0.93
R6557:Tdrd5	UTSW	1	156,128,291 (GRCm39)	missense	probably benign	0.10
R7068:Tdrd5	UTSW	1	156,111,841 (GRCm39)	missense	probably damaging	1.00
R7184:Tdrd5	UTSW	1	156,087,505 (GRCm39)	missense	probably benign	0.30
R7199:Tdrd5	UTSW	1	156,129,293 (GRCm39)	missense	probably damaging	0.98
R7432:Tdrd5	UTSW	1	156,130,002 (GRCm39)	missense	probably damaging	1.00
R7469:Tdrd5	UTSW	1	156,090,475 (GRCm39)	missense	probably benign	0.00
R8030:Tdrd5	UTSW	1	156,098,165 (GRCm39)	nonsense	probably null
R8323:Tdrd5	UTSW	1	156,094,832 (GRCm39)	missense	possibly damaging	0.63
R8680:Tdrd5	UTSW	1	156,098,788 (GRCm39)	missense	possibly damaging	0.49
R9282:Tdrd5	UTSW	1	156,105,030 (GRCm39)	missense	probably benign	0.01
X0026:Tdrd5	UTSW	1	156,112,997 (GRCm39)	missense	probably benign	0.01
Z1176:Tdrd5	UTSW	1	156,083,269 (GRCm39)	missense	probably damaging	1.00
Z1177:Tdrd5	UTSW	1	156,130,158 (GRCm39)	missense	probably damaging	1.00
Z1177:Tdrd5	UTSW	1	156,130,156 (GRCm39)	missense	possibly damaging	0.95
Z1177:Tdrd5	UTSW	1	156,083,199 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AACGGACAGAGACATCGCTC -3'
(R):5'- TGGAGCTTTTATCTACATGGTTCTC -3'

Sequencing Primer
(F):5'- GACAGAGACATCGCTCTCATTAGG -3'
(R):5'- CTACATGGTTCTCTTGAAAAACGTAC -3'

Posted On

2014-09-17