Incidental Mutation 'R2084:Krba1'
ID 230195
Institutional Source Beutler Lab
Gene Symbol Krba1
Ensembl Gene ENSMUSG00000042810
Gene Name KRAB-A domain containing 1
Synonyms A930040G15Rik
MMRRC Submission 040089-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.063) question?
Stock # R2084 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 48372520-48396715 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 48391502 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Glutamine at position 797 (L797Q)
Ref Sequence ENSEMBL: ENSMUSP00000110219 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000031815] [ENSMUST00000077093] [ENSMUST00000114571] [ENSMUST00000114572] [ENSMUST00000203371]
AlphaFold Q6NXZ1
Predicted Effect probably damaging
Transcript: ENSMUST00000031815
AA Change: L751Q

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000031815
Gene: ENSMUSG00000042810
AA Change: L751Q

DomainStartEndE-ValueType
low complexity region 31 43 N/A INTRINSIC
KRBA1 154 197 1.27e-3 SMART
KRBA1 249 291 3.23e-14 SMART
KRBA1 310 355 8.27e-12 SMART
KRBA1 357 399 4.98e-6 SMART
low complexity region 452 459 N/A INTRINSIC
KRBA1 474 516 6.03e-14 SMART
KRBA1 576 619 7.71e-12 SMART
coiled coil region 814 847 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000077093
AA Change: L762Q

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000076345
Gene: ENSMUSG00000042810
AA Change: L762Q

DomainStartEndE-ValueType
Blast:KRAB 1 34 2e-12 BLAST
KRBA1 98 141 1.27e-3 SMART
KRBA1 193 235 3.23e-14 SMART
KRBA1 254 299 8.27e-12 SMART
KRBA1 367 409 7.26e-8 SMART
low complexity region 462 469 N/A INTRINSIC
KRBA1 484 526 6.03e-14 SMART
KRBA1 586 629 7.71e-12 SMART
coiled coil region 824 857 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000114571
AA Change: L762Q

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000110218
Gene: ENSMUSG00000042810
AA Change: L762Q

DomainStartEndE-ValueType
Blast:KRAB 1 34 2e-12 BLAST
KRBA1 98 141 1.27e-3 SMART
KRBA1 193 235 3.23e-14 SMART
KRBA1 254 299 8.27e-12 SMART
KRBA1 367 409 7.26e-8 SMART
low complexity region 462 469 N/A INTRINSIC
KRBA1 484 526 6.03e-14 SMART
KRBA1 586 629 7.71e-12 SMART
coiled coil region 824 857 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000114572
AA Change: L797Q

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000110219
Gene: ENSMUSG00000042810
AA Change: L797Q

DomainStartEndE-ValueType
Blast:KRAB 1 34 2e-12 BLAST
KRBA1 98 141 1.27e-3 SMART
KRBA1 194 236 3.23e-14 SMART
KRBA1 255 300 8.27e-12 SMART
KRBA1 368 410 7.26e-8 SMART
low complexity region 463 470 N/A INTRINSIC
KRBA1 485 527 6.03e-14 SMART
KRBA1 587 630 7.71e-12 SMART
coiled coil region 825 858 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000154536
Predicted Effect possibly damaging
Transcript: ENSMUST00000203371
AA Change: L761Q

PolyPhen 2 Score 0.956 (Sensitivity: 0.79; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000145256
Gene: ENSMUSG00000042810
AA Change: L761Q

DomainStartEndE-ValueType
Blast:KRAB 1 34 2e-12 BLAST
KRBA1 97 140 8.1e-8 SMART
KRBA1 193 235 2.5e-18 SMART
KRBA1 254 299 6.4e-16 SMART
KRBA1 367 409 5.7e-12 SMART
low complexity region 462 469 N/A INTRINSIC
KRBA1 484 526 4.6e-18 SMART
KRBA1 586 629 5.8e-16 SMART
coiled coil region 824 857 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000204554
Meta Mutation Damage Score 0.2134 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.3%
Validation Efficiency 100% (53/53)
Allele List at MGI
Other mutations in this stock
Total: 53 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ankrd36 C T 11: 5,612,378 (GRCm39) Q1237* probably null Het
Aph1c T G 9: 66,726,579 (GRCm39) R258S probably damaging Het
Arfgap3 T A 15: 83,218,767 (GRCm39) N102I probably damaging Het
Astn1 T C 1: 158,299,978 (GRCm39) V106A probably damaging Het
BC005537 G T 13: 24,996,698 (GRCm39) probably null Het
Card10 G A 15: 78,677,171 (GRCm39) T412M possibly damaging Het
Cars1 T C 7: 143,140,919 (GRCm39) I126M probably benign Het
Cfap20dc T C 14: 8,558,171 (GRCm38) D138G probably damaging Het
Col11a1 C T 3: 113,951,791 (GRCm39) R1074C probably damaging Het
Cpped1 T C 16: 11,646,365 (GRCm39) D153G probably damaging Het
Cyp2j11 T A 4: 96,227,438 (GRCm39) I193F probably damaging Het
Dnm2 T C 9: 21,411,667 (GRCm39) probably null Het
Efemp1 A G 11: 28,865,763 (GRCm39) D288G probably damaging Het
Espl1 T C 15: 102,205,286 (GRCm39) probably null Het
Fcgbpl1 G A 7: 27,856,960 (GRCm39) V2103M probably damaging Het
Fcrl5 T C 3: 87,351,537 (GRCm39) F262L probably benign Het
Gh G A 11: 106,191,958 (GRCm39) P84L probably damaging Het
Gm10267 T C 18: 44,290,397 (GRCm39) R37G probably benign Het
Hmgxb3 C T 18: 61,288,095 (GRCm39) probably benign Het
Ifit2 T C 19: 34,550,750 (GRCm39) W97R probably damaging Het
Ift81 T G 5: 122,705,410 (GRCm39) K491Q probably benign Het
Ints8 A G 4: 11,230,377 (GRCm39) V488A probably benign Het
Krr1 T C 10: 111,812,690 (GRCm39) V100A probably damaging Het
Nav1 C T 1: 135,535,158 (GRCm39) probably benign Het
Nos1 C A 5: 118,081,310 (GRCm39) Q1205K probably damaging Het
Nup85 A T 11: 115,459,517 (GRCm39) D125V possibly damaging Het
Or5ak23 T C 2: 85,244,959 (GRCm39) E88G probably benign Het
Pclo T G 5: 14,732,162 (GRCm39) S3555A probably benign Het
Pdzrn3 T C 6: 101,131,256 (GRCm39) I473V probably benign Het
Polr1a A G 6: 71,927,793 (GRCm39) E848G possibly damaging Het
Pop1 T C 15: 34,508,744 (GRCm39) probably benign Het
Pramel23 T A 4: 143,425,920 (GRCm39) T8S probably damaging Het
Prpf3 C T 3: 95,756,301 (GRCm39) E117K probably benign Het
Psmg3 C T 5: 139,809,744 (GRCm39) V101M probably benign Het
Rexo1 G A 10: 80,397,100 (GRCm39) S52L probably benign Het
Ryk C T 9: 102,752,971 (GRCm39) T210M probably damaging Het
Sde2 A G 1: 180,690,198 (GRCm39) E306G probably damaging Het
Sec24c A G 14: 20,741,347 (GRCm39) Q658R probably benign Het
Sgsm1 G A 5: 113,433,266 (GRCm39) T183I probably damaging Het
Skint7 T A 4: 111,837,375 (GRCm39) V51E probably damaging Het
Slc6a5 T A 7: 49,598,002 (GRCm39) M622K probably benign Het
Slco1a5 T C 6: 142,180,437 (GRCm39) H655R probably benign Het
Slco1c1 T A 6: 141,505,578 (GRCm39) Y452* probably null Het
Spn T C 7: 126,736,210 (GRCm39) E99G probably benign Het
Ssc5d A G 7: 4,940,011 (GRCm39) I789V probably benign Het
Taok2 G A 7: 126,469,363 (GRCm39) T1155I probably benign Het
Tet2 T C 3: 133,193,528 (GRCm39) Q302R possibly damaging Het
Trmt1l A G 1: 151,316,605 (GRCm39) T189A probably damaging Het
Tubal3 T C 13: 3,978,192 (GRCm39) I36T possibly damaging Het
Vmn2r71 A T 7: 85,267,945 (GRCm39) Y133F probably benign Het
Vps11 G T 9: 44,264,558 (GRCm39) H673N probably benign Het
Zc3h12a C T 4: 125,013,802 (GRCm39) S354N probably benign Het
Zfp2 A G 11: 50,791,789 (GRCm39) S85P probably benign Het
Other mutations in Krba1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00584:Krba1 APN 6 48,383,252 (GRCm39) missense possibly damaging 0.95
IGL01663:Krba1 APN 6 48,388,688 (GRCm39) missense probably damaging 0.99
IGL01764:Krba1 APN 6 48,392,770 (GRCm39) missense probably benign 0.01
IGL02036:Krba1 APN 6 48,392,576 (GRCm39) missense possibly damaging 0.95
IGL02333:Krba1 APN 6 48,390,021 (GRCm39) missense probably damaging 0.99
IGL02681:Krba1 APN 6 48,381,052 (GRCm39) missense probably damaging 1.00
IGL03069:Krba1 APN 6 48,391,483 (GRCm39) missense possibly damaging 0.53
IGL03380:Krba1 APN 6 48,380,387 (GRCm39) missense possibly damaging 0.53
PIT4151001:Krba1 UTSW 6 48,379,831 (GRCm39) missense probably damaging 0.99
R0077:Krba1 UTSW 6 48,382,159 (GRCm39) splice site probably benign
R0504:Krba1 UTSW 6 48,393,188 (GRCm39) missense probably benign 0.07
R1051:Krba1 UTSW 6 48,390,332 (GRCm39) missense possibly damaging 0.82
R1875:Krba1 UTSW 6 48,390,983 (GRCm39) splice site probably null
R1912:Krba1 UTSW 6 48,392,699 (GRCm39) missense probably benign 0.45
R4035:Krba1 UTSW 6 48,388,614 (GRCm39) missense probably damaging 1.00
R4291:Krba1 UTSW 6 48,392,599 (GRCm39) missense possibly damaging 0.93
R4568:Krba1 UTSW 6 48,386,657 (GRCm39) missense probably damaging 0.98
R4619:Krba1 UTSW 6 48,383,282 (GRCm39) nonsense probably null
R4638:Krba1 UTSW 6 48,386,685 (GRCm39) nonsense probably null
R4913:Krba1 UTSW 6 48,383,891 (GRCm39) missense probably benign 0.00
R5174:Krba1 UTSW 6 48,389,229 (GRCm39) missense probably damaging 1.00
R5487:Krba1 UTSW 6 48,380,973 (GRCm39) missense probably damaging 1.00
R5496:Krba1 UTSW 6 48,383,290 (GRCm39) missense possibly damaging 0.54
R5514:Krba1 UTSW 6 48,390,429 (GRCm39) missense probably damaging 1.00
R5879:Krba1 UTSW 6 48,392,678 (GRCm39) missense possibly damaging 0.89
R6351:Krba1 UTSW 6 48,391,062 (GRCm39) missense probably benign 0.35
R6516:Krba1 UTSW 6 48,390,206 (GRCm39) nonsense probably null
R7003:Krba1 UTSW 6 48,390,014 (GRCm39) missense possibly damaging 0.71
R7135:Krba1 UTSW 6 48,393,233 (GRCm39) missense probably benign 0.01
R7202:Krba1 UTSW 6 48,389,261 (GRCm39) missense probably damaging 1.00
R7308:Krba1 UTSW 6 48,383,273 (GRCm39) missense probably benign 0.04
R7936:Krba1 UTSW 6 48,388,603 (GRCm39) missense probably damaging 1.00
R8750:Krba1 UTSW 6 48,382,212 (GRCm39) missense probably damaging 0.97
R8894:Krba1 UTSW 6 48,388,629 (GRCm39) missense probably damaging 0.98
R9726:Krba1 UTSW 6 48,389,298 (GRCm39) missense possibly damaging 0.91
Z1177:Krba1 UTSW 6 48,392,828 (GRCm39) missense probably damaging 1.00
Z1177:Krba1 UTSW 6 48,390,190 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GCACCTTGCGTCTGACTTAATC -3'
(R):5'- ACTGAGTGGCTTCAGTGTAACAC -3'

Sequencing Primer
(F):5'- AAAAGTTGAAGATTTTTCCTTGGGTG -3'
(R):5'- CAGTGTAACACTTTCCTAACCATGG -3'
Posted On 2014-09-18